SARS_CORONAVIRUS ctaccAAcAcaTgTATtttTAtatAaaccAAAAaCttgtCcAttAgCaCaCaATggaaaa
Severe_acute_respiratory_syndrom ---ATtAaAgGTTTATACCTtCCCAGGtaAcAAaC----CAACCAACttTCGAT------
SARS_coronavirus_civet007 -------------------------------AAGC----CAACCAAC-CTCGAT------
SARS_coronavirus_GZ50 ------------------CTACCCAGG--AAAAGC----CAACCAAC-CTCGAT------
SARS_coronavirus_Taiwan_TC1 ------------------------------------------------------------
Bat_coronavirus_(BtCoV/273/2005) ---ATAttAgGTTTtTACCTACCCAGG--AAAAGC----CAACCAAC-CTCGAT------
BtRf-BetaCoV/HeB2013 ------------------------------------------------------------
SARS_CORONAVIRUS ctaatgggtggtttatgtgatttaCaaTaaTAGcTCaTacctcCTAAgtaAAgTTgAgtc
Severe_acute_respiratory_syndrom ------------------------CTCTTGTAGATC-TGTTCTCTAAACGAACTTTA---
SARS_coronavirus_civet007 ------------------------CTCTTGTAGATC-TGTTCTCTAAACGAACTTTA---
SARS_coronavirus_GZ50 ------------------------CTCTTGTAGATC-TGTTCTCTAAACGAACTTTA---
SARS_coronavirus_Taiwan_TC1 --------------------------------------------------AACTTTA---
Bat_coronavirus_(BtCoV/273/2005) ------------------------CTCTTGTAGATC-TGTTCTtTAAACGAACTTcA---
BtRf-BetaCoV/HeB2013 ------------------------------------------------------------
SARS_CORONAVIRUS AcATCTGTGacatcacaaCctGGa-----GCaTtGcaaACaTACGgAtTAacAgacAagA
Severe_acute_respiratory_syndrom AAATCTGTGTgGCTGTCaCTCGGCTGCATGCtTAGTGCACtcACGCAGTATAAttAATAA
SARS_coronavirus_civet007 AAATCTGTGTAGtTGTCGCTCGGCTGCATGCCTAGTGCACCTACGCAGTATAAACAATAA
SARS_coronavirus_GZ50 AAATCTGTGTAGCTGTCGCTCGGCTGCATGCCTAGTGCACCTACGCAGTATAAACAATAA
SARS_coronavirus_Taiwan_TC1 AAATCTGTGTAGCTGTCGCTCGGCTGCATGCCTAGTGCACCTACGCAGTATAAACAATAA
Bat_coronavirus_(BtCoV/273/2005) AAATCTGTGTgGCTGTCGCTtGGCTGtATGCCTAGTGCACCTACaCAGTATAAAtAATAA
BtRf-BetaCoV/HeB2013 ------------------------------------------------------------
SARS_CORONAVIRUS CtAATTTatgTGatGTTGAtAtGAcAtGgtcGTAAC------agCaTtTaCAacaTaaga
Severe_acute_respiratory_syndrom CtAATT--ACTGTCGTTGACAgGAcACGA--GTAACTCGTCtaTCTTCTGCAGgCTGCTT
SARS_coronavirus_civet007 tAAATTTTACTGTCGTTGACAAGAAACGA--GTAACTCGTCCCTCTTCTGCAGACTGCTT
SARS_coronavirus_GZ50 tAAATTTTACTGTCGTTGACAAGAAACGA--GTAACTCGTCCCTCTTCTGCAGACTGCTT
SARS_coronavirus_Taiwan_TC1 tAAATTTTACTGTCGTTGACAAGAAACGA--GTAACTCGTCCCTCTTCTGCAGACTGCTT
Bat_coronavirus_(BtCoV/273/2005) C----TTTACTGTCGTTGACAAGAAACGg--GTAACTCGTCCtTCTTCTGCAGACTGCTT
BtRf-BetaCoV/HeB2013 ------------------------------------------------------------
SARS_CORONAVIRUS AtGGTcTaCGTatGca------------AgCAcCAcAtCTtaaTgaaGTCtGtGaaTtgC
Severe_acute_respiratory_syndrom ACGGTTT-CGTCCGTGTTGCAGcCGATCATCAGCAcAtCTAGGTTTCGTCCGGGTGTGAC
SARS_coronavirus_civet007 ACGGTTT-CGTCCGTGTTGCAGTCGATCATCAGCATACCTAGGTTTCGTCCGGGTGTGAC
SARS_coronavirus_GZ50 ACGGTTT-CGTCCGTGTTGCAGTCGATCATCAGCATACCTAGGTTTCGTCCGGGTGTGAC
SARS_coronavirus_Taiwan_TC1 ACGGTTT-CGTCCGTGTTGCAGTCGATCATCAGCATACCTAGGTTTCGTCCGGGTGTGAC
Bat_coronavirus_(BtCoV/273/2005) ACGGTTT-CGTCCGTGTTGtAGTCGATCATCAGCATACCTAGGTTTCGTCCGGGTGTGAC
BtRf-BetaCoV/HeB2013 ------------------------------------------------------------
SARS_CORONAVIRUS aaAgAacacaagccccaacagcctGTAAGActGtatgcggtgtgtacAtAGCCTcaTaaa
Severe_acute_respiratory_syndrom CGAAAG------------------GTAAGATGG--------------AGAGCCTTGT---
SARS_coronavirus_civet007 CGAAAG------------------GTAAGATGG--------------AGAGCCTTGT---
SARS_coronavirus_GZ50 CGAAAG------------------GTAAGATGG--------------AGAGCCTTGT---
SARS_coronavirus_Taiwan_TC1 CGAAAG------------------GTAAGATGG--------------AGAGCCTTGT---
Bat_coronavirus_(BtCoV/273/2005) CGAAAG------------------GTAAGATGG--------------AGAGCCTTGT---
BtRf-BetaCoV/HeB2013 ----AG------------------GTAAGATGG--------------AGAGCCTTGT---
SARS_CORONAVIRUS actcaggttcccaatacCTTGaaGTGTtAtcattagtaagcAtaAcAgAAtACAtGTCtA
Severe_acute_respiratory_syndrom ----------------cCcTG--GTtTCA------------ACGAGAAAACACACGTCCA
SARS_coronavirus_civet007 ----------------TCTTG--GTGTCA------------ACGAGAAAACACACGTCCA
SARS_coronavirus_GZ50 ----------------TCTTG--GTGTCA------------ACGAGAAAACACACGTCCA
SARS_coronavirus_Taiwan_TC1 ----------------TCTTG--GTGTCA------------ACGAGAAAACACACGTCCA
Bat_coronavirus_(BtCoV/273/2005) ----------------TCTTG--GTGTCA------------ACGAGAAAACACACGTCCA
BtRf-BetaCoV/HeB2013 ----------------TCTTG--GTGTCA------------ACGAGAAAACACACGTCCA
SARS_CORONAVIRUS ACatgtgtcCtGTTaaCtcaTCaTgtAGcTTtcttatgtattgtaagtacaaatgAaAGA
Severe_acute_respiratory_syndrom AC------TCAGTTTGCCTGTttTaCAGGTT------------------------cGcGA
SARS_coronavirus_civet007 AC------TCAGTTTGCCTGTCCTTCAGGTT------------------------AGAGA
SARS_coronavirus_GZ50 AC------TCAGTTTGCCTGTCCTTCAGGTT------------------------AGAGA
SARS_coronavirus_Taiwan_TC1 AC------TCAGTTTGCCTGTCCTTCAGGTT------------------------AGAGA
Bat_coronavirus_(BtCoV/273/2005) AC------TCAGTTTaCCTGTtCTTCAGGTT------------------------AGtGA
BtRf-BetaCoV/HeB2013 AC------TCAGTTTaCCTGTtCTTCAGGTT------------------------AGtGA
SARS_CORONAVIRUS CaTcagcatactcctgattaggatgttTAGTaaGTGGgT---aaGcaTCTaTaGctaAaG
Severe_acute_respiratory_syndrom CGT----------------------GCTcGTaCGTGGCTTtGGaGACTCcGTGGAgGAGG
SARS_coronavirus_civet007 CGT----------------------GCTAGTGCGTGGCTTCGGGGACTCTGTGGAAGAGG
SARS_coronavirus_GZ50 CGT----------------------GCTAGTGCGTGGCTTCGGGGACTCTGTGGAAGAGG
SARS_coronavirus_Taiwan_TC1 CGT----------------------GCTAGTGCGTGGCTTCGGGGACTCTGTGGAAGAGG
Bat_coronavirus_(BtCoV/273/2005) CGT----------------------GtTAGTGCGTGGtTTCGGGGAtaCTGTGGAAGAaG
BtRf-BetaCoV/HeB2013 CGT----------------------GtTAGTGCGTGGtTTCGGGGAtaCTGTGGAAGAaG
SARS_CORONAVIRUS aCacgaaccgttCaATCatAaGtgtaccatctgtttttACGatAtCATCTacAAAAcagc
Severe_acute_respiratory_syndrom tC----------tTATCaGAGG---------------CACGTcAACATCTtAAAgA----
SARS_coronavirus_civet007 CC----------CTATCGGAGG---------------CACGTGAACAcCTCAAAAA----
SARS_coronavirus_GZ50 CC----------CTATCGGAGG---------------CACGTGAACAcCTCAAAAA----
SARS_coronavirus_Taiwan_TC1 CC----------CTATCGGAGG---------------CACGTGAACAcCTCAAAAA----
Bat_coronavirus_(BtCoV/273/2005) CC----------CTAgCGGAaG---------------CACGTGAACATCTtAAAAA----
BtRf-BetaCoV/HeB2013 CC----------CTAgCGGAaG---------------CACGTGAACATCTtAAAAA----
SARS_CORONAVIRUS cGGCcCcTagGaTtctTgaTgGAtCTGGgtaAggAAGGtacACataatcaTcaCCCtGtT
Severe_acute_respiratory_syndrom TGGCACTTGTGGc--tTAGTAGAagTtG---AAAAAGGCGTtt-------TGCCtCAaCT
SARS_coronavirus_civet007 TGGCACTTGTGGT--CTAGTAGAGCTGG---AAAAAGGCGTAC-------TGCCCCAGCT
SARS_coronavirus_GZ50 TGGCACTTGTGGT--CTAGTAGAGCTGG---AAAAAGGCGTAC-------TGCCCCAGCT
SARS_coronavirus_Taiwan_TC1 TGGCACTTGTGGT--CTAGTAGAGCTGG---AAAAAGGCGTAC-------TGCCCCAGCT
Bat_coronavirus_(BtCoV/273/2005) TGGCACTTGTGGc--CTAGTAGAGCTGG---AAAAAGGtGTtt-------TaCgCCAGCT
BtRf-BetaCoV/HeB2013 TGGCACTTGTGGc--CTAGTAGAGCTGG---AAAAAGGtGTtt-------TaCgCCAGCT
SARS_CORONAVIRUS TaActAGCatTgTaTGTTgAgagcaaaattcatgaggtcctttagtaaggtcagtctcag
Severe_acute_respiratory_syndrom TGAACAGCCCTATGTGTTCA----------------------------------------
SARS_coronavirus_civet007 TGAACAGCCCTATGTGTTCA----------------------------------------
SARS_coronavirus_GZ50 TGAACAGCCCTATGTGTTCA----------------------------------------
SARS_coronavirus_Taiwan_TC1 TGAACAGCCCTATGTGTTCA----------------------------------------
Bat_coronavirus_(BtCoV/273/2005) TGAAgAGCCCTATGTGTTCA----------------------------------------
BtRf-BetaCoV/HeB2013 TGAAgAGCCCTATGTGTTCA----------------------------------------
SARS_CORONAVIRUS TccAACaTTtTGcttcagacataaaaacatTGttTTgAtaAtaAAgaACtGaCtTAAaGT
Severe_acute_respiratory_syndrom TcAAACGTTCgGA-----------------TGCtcgAActgCaccTCAtGGtCATgttaT
SARS_coronavirus_civet007 TTAAACGTTCTGA-----------------TGCCTTAAGCACCAATCACGGCCAcAAGGT
SARS_coronavirus_GZ50 TTAAACGTTCTGA-----------------TGCCTTAAGCACCAATCACGGCCAcAAGGT
SARS_coronavirus_Taiwan_TC1 TTAAACGTTCTGA-----------------TGCCTTAAGCACCAATCACGGCCAcAAGGT
Bat_coronavirus_(BtCoV/273/2005) TTAAACGaTCTGA-----------------aGCCTTAAGCACCAcTCAtGGCCATAAGGT
BtRf-BetaCoV/HeB2013 TTAAACGaTCTGA-----------------aGCCTTAAGCACCAcTCAtGGCCATAAGGT
SARS_CORONAVIRUS tcTTtAtGCTaGccaCtagAccttgagatgcATaagtGctATTgaaacacacaaCAGcAt
Severe_acute_respiratory_syndrom gGTTGA-GCTGGTaGCAGAA-----------cTcGAaGGCATT-----------CAGTAC
SARS_coronavirus_civet007 CGTTGA-GCTGGTtGCAGAA-----------ATGGACGGCATT-----------CAGTAC
SARS_coronavirus_GZ50 CGTTGA-GCTGGTtGCAGAA-----------ATGGACGGCATT-----------CAGTAC
SARS_coronavirus_Taiwan_TC1 CGTTGA-GCTGGTtGCAGAA-----------ATGGACGGCATT-----------CAGTAC
Bat_coronavirus_(BtCoV/273/2005) tGTTGA-atTGGTgGCtGAA-----------ATGaAtGGCATT-----------CAGTtC
BtRf-BetaCoV/HeB2013 tGTTGA-atTGGTgGCtGAA-----------ATGaAtGGCATT-----------CAGTtC
SARS_CORONAVIRUS cGTCagAGaGtatCAtCAtTGaGAaatgTttacgCAaATaTGcGtaAAACtcattcaCaA
Severe_acute_respiratory_syndrom GGTCGTAGtGGTgagACACTtGGtGTcCTtGTcCCtCATGTGGGCGAAAta------CCA
SARS_coronavirus_civet007 GGTCGTAGCGGTAtAACACTGGGAGTACTCGTGCCACATGTGGGCGAAACC------CCA
SARS_coronavirus_GZ50 GGTCGTAGCGGTAtAACACTGGGAGTACTCGTGCCACATGTGGGCGAAACC------CCA
SARS_coronavirus_Taiwan_TC1 GGTCGTAGCGGTAtAACACTGGGAGTACTCGTGCCACATGTGGGCGAAACC------CCA
Bat_coronavirus_(BtCoV/273/2005) GGTCGTAGCGGTACAACACTGGGAGTtCTCGTGCCACATGTGGGCGAAACC------CCA
BtRf-BetaCoV/HeB2013 GGTCGTAGCGGTACAACACTGGGAGTtCTCGTGCCACATGTGGGCGAAACC------CCA
SARS_CORONAVIRUS AgTctgTgtCaacATcTctaTtTctaTAgagACacTcATAAaGtctGtGtTGtaaattGc
Severe_acute_respiratory_syndrom gTgGCtTACCGCAAgGTTCTTCTTCGTAAGAACGGTAATAAaG---GAGCTG------GT
SARS_coronavirus_civet007 ATTGCATACCGCAATGTTCTTCTTCGTAAGAACGGTAATAAGG---GAGCcG------GT
SARS_coronavirus_GZ50 ATTGCATACCGCAATGTTCTTCTTCGTAAGAACGGTAATAAGG---GAGCcG------GT
SARS_coronavirus_Taiwan_TC1 ATTGCATACCGCAATGTTCTTCTTCGTAAGAACGGTAATAAGG---GAGCcG------GT
Bat_coronavirus_(BtCoV/273/2005) ATTGCgTACCGCAATGTTCTTCTTCGcAAGAACGGTAATAAGG---GAGCTG------GT
BtRf-BetaCoV/HeB2013 ATTGCgTACCGCAATGTTCTTCTTCGcAAGAACGGTAATAAGG---GAGCTG------GT
SARS_CORONAVIRUS GGaCATActTATcGgcaattttgttacCATCagTagataAAAGTgcatTaACaTtGgccG
Severe_acute_respiratory_syndrom GGcCATAGtTAcGG-------------CgcCGAT---CTAAAGTCaTtTGACTTAG---G
SARS_coronavirus_civet007 GGTCATAGCTATGG-------------CATCGAT---CTAAAGTCTTATGACTTAG---G
SARS_coronavirus_GZ50 GGTCATAGCTATGG-------------CATCGAT---CTAAAGTCTTATGACTTAG---G
SARS_coronavirus_Taiwan_TC1 GGTCATAGCTATGG-------------CATCGAT---CTAAAGTCTTATGACTTAG---G
Bat_coronavirus_(BtCoV/273/2005) GGTCATAGCTAcGG-------------CATCGAT---CTAAAGTCTTATGACTTAG---G
BtRf-BetaCoV/HeB2013 GGTCATAGCTAcGG-------------CATCGAT---CTAAAGTCTTATGACTTAG---G
SARS_CORONAVIRUS TGAC-AGCTTGacaaatgttaaaaaCACTatTagCATaagcagTTgTGgcatctcctgat
Severe_acute_respiratory_syndrom cGACGAGCTTG-------------GCACTGATCCttaTGAAGATTtTc------------
SARS_coronavirus_civet007 TGACGAGCTTG-------------GCACTGATCCCATTGAAGATTATG------------
SARS_coronavirus_GZ50 TGACGAGCTTG-------------GCACTGATCCCATTGAAGATTATG------------
SARS_coronavirus_Taiwan_TC1 TGACGAGCTTG-------------GCACTGATCCCATTGAAGATTATG------------
Bat_coronavirus_(BtCoV/273/2005) TGACGAGCTTa-------------aCACTGATCCCATTGAAGATTATG------------
BtRf-BetaCoV/HeB2013 TGACGAGCTTa-------------aCACTGATCCCATTGAAGATTATG------------
SARS_CORONAVIRUS gaggttccacctggtttAACAtAtAgTGaAcCgCcAcaCATGaCcaT--TtCACTCaata
Severe_acute_respiratory_syndrom -----------------AAgA-AAACTGGAACACTAAaCATaGCAGTGGTGttacC----
SARS_coronavirus_civet007 -----------------AACA-AAACTGGAACACTAAGCATGGCAGTGGTGCACTC----
SARS_coronavirus_GZ50 -----------------AACA-AAACTGGAACACTAAGCATGGCAGTGGTGCACTC----
SARS_coronavirus_Taiwan_TC1 -----------------AACA-AAACTGGAACACTAAGCATGGCAGTGGTGCACTC----
Bat_coronavirus_(BtCoV/273/2005) -----------------AACA-AAAaTGGAACACTAAGCATGGCAGgGGTGCtCTC----
BtRf-BetaCoV/HeB2013 -----------------AACA-AAAaTGGAACACTAAGCATGGCAGgGGTGCtCTC----
SARS_CORONAVIRUS CtTGAgCaCACTCaTtAGCTaAtctATaGAaacGgtGTgACaaGCTAcaacacgttgtat
Severe_acute_respiratory_syndrom CGTGAACTCAtgCGTGAGCTtA---AcGGAGGgGCAtaCACTCGCTA-------------
SARS_coronavirus_civet007 CGTGAACTCACTCGTGAGCTCA---ATGGAGGTGCAGTCACTCGCTA-------------
SARS_coronavirus_GZ50 CGTGAACTCACTCGTGAGCTCA---ATGGAGGTGCAGTCACTCGCTA-------------
SARS_coronavirus_Taiwan_TC1 CGTGAACTCACTCGTGAGCTCA---ATGGAGGTGCAGTCACTCGCTA-------------
Bat_coronavirus_(BtCoV/273/2005) CGTGAACTCAtTCGTGAGCTtA---ATGGAGGTGCAGTCACTCGCTA-------------
BtRf-BetaCoV/HeB2013 CGTGAACTCAtTCGTGAGCTtA---ATGGAGGTGCAGTCACTCGCTA-------------
SARS_CORONAVIRUS gttTGcgagCAAgAACaagTGaGGCCaTaAttcTaaGcAtgtTaggcatggCTctATcaC
Severe_acute_respiratory_syndrom ---TGTCGAtAACAACTTCTGTGGCCCTGA---TGGcTACCCT--------CTTGAgTGC
SARS_coronavirus_civet007 ---TGTCGACAACAAtTTCTGTGGCCCaGA---TGGGTACCCT--------CTTGATTGC
SARS_coronavirus_GZ50 ---TGTCGACAACAAtTTCTGTGGCCCaGA---TGGGTACCCT--------CTTGATTGC
SARS_coronavirus_Taiwan_TC1 ---TGTCGACAACAAtTTCTGTGGCCCaGA---TGGGTACCCT--------CTTGATTGC
Bat_coronavirus_(BtCoV/273/2005) ---TGTtGAtAACAACTTCTGTGGCCCTGA---TGGGTAtCCT--------CTTGAcTGC
BtRf-BetaCoV/HeB2013 ---TGTtGAtAACAACTTCTGTGGCCCTGA---TGGGTAtCCT--------CTTGAcTGC
SARS_CORONAVIRUS ATTtAgGATaaTCcCaacCcataagGTGaGGGttttcTAcaTCAcTaTaaACagTTTtta
Severe_acute_respiratory_syndrom ATTAAAGAcCTTCTaGCAC------GTGCtGG-----TAAagCttcaTGCACTtTgT---
SARS_coronavirus_civet007 ATcAAAGATtTTCTCGCAC------GcGCGGG-----cAAGTCAATGTGCACTCTTT---
SARS_coronavirus_GZ50 ATcAAAGATtTTCTCGCAC------GcGCGGG-----cAAGTCAATGTGCACTCTTT---
SARS_coronavirus_Taiwan_TC1 ATcAAAGATtTTCTCGCAC------GcGCGGG-----cAAGTCAATGTGCACTCTTT---
Bat_coronavirus_(BtCoV/273/2005) ATTAAAGATCTTCTCGCtC------GTGCGGG-----TAAGTCgATGTGCACTCTTT---
BtRf-BetaCoV/HeB2013 ATTAAAGATCTTCTCGCtC------GTGCGGG-----TAAGTtgATGTGCACTCTTT---
SARS_CORONAVIRUS acatgttgtgccaaccaCCatAgAAtTTGcttgttccaattAcTACAgTagcTCctctAG
Severe_acute_respiratory_syndrom -----------------CCGAACAACTgG------------AcTttATTGAcaCtAAGAG
SARS_coronavirus_civet007 -----------------CCGAACAACTTG------------ATTACATcGAGTCGAAGAG
SARS_coronavirus_GZ50 -----------------CCGAACAACTTG------------ATTACATcGAGTCGAAGAG
SARS_coronavirus_Taiwan_TC1 -----------------CCGAACAACTTG------------ATTACATcGAGTCGAAGAG
Bat_coronavirus_(BtCoV/273/2005) -----------------CCGAACAACTTG------------ATTtCATTGAaTCGAAGcG
BtRf-BetaCoV/HeB2013 -----------------CCGAACAACTTG------------ATTtCATTGAaTCGAAGcG
SARS_CORONAVIRUS tGGcGgCTAtTGaTttCaatAAttTttG-ATGAAAcTGtCTatTggtCatAGtaCT----
Severe_acute_respiratory_syndrom gGGTGTaTACTGCTGCCGTGAACATGAGCATGAAATTGCtTGGTACACgGAaCGtTCTGA
SARS_coronavirus_civet007 AGGTGTCTACTGCTGCCGTGAcCATGAGCATGAAATTGCCTGGTtCACTGAGCGCTCTGA
SARS_coronavirus_GZ50 AGGTGTCTACTGCTGCCGTGAcCATGAGCATGAAATTGCCTGGTtCACTGAGCGCTCTGA
SARS_coronavirus_Taiwan_TC1 AGGTGTCTACTGCTGCCGTGAcCATGAGCATGAAATTGCCTGGTtCACTGAGCGCTCTGA
Bat_coronavirus_(BtCoV/273/2005) cGGTGTCTAtTGCTGCCGTGAACATGAGCATGAAATTGCtTGGTACACTGAGCGCTCaGA
BtRf-BetaCoV/HeB2013 tGGTGTCTAtTGCTGCCGTGAACATGAGCATGAAATTGCtTGGTACACTGAGCGCTCaGA
SARS_CORONAVIRUS --AcAGaTAgagaCACCAGctACggTgCGAgctctattctttgcAcTAAtgGcatacttA
Severe_acute_respiratory_syndrom aAAGAGCTAtGAattgCAGACACCtTTtGAA-------------ATTAAattgG---CaA
SARS_coronavirus_civet007 TAAGAGCTACGAGCACCAGACACCCTTCGAA-------------ATTAAGAGTG---CCA
SARS_coronavirus_GZ50 TAAGAGCTACGAGCACCAGACACCCTTCGAA-------------ATTAAGAGTG---CCA
SARS_coronavirus_Taiwan_TC1 TAAGAGCTACGAGCACCAGACACCCTTCGAA-------------ATTAAGAGTG---CCA
Bat_coronavirus_(BtCoV/273/2005) cAAGAGtTAtGAGCACCAGACACCaTTCGAg-------------gTTAAGAGTG---CCA
BtRf-BetaCoV/HeB2013 cAAGAGtTAtGAGCACCAGACACCaTTCGAg-------------ATTAAGAGTG---CCA
SARS_CORONAVIRUS AGAttcATTTG--AgTTatAgtaGGGAtgacattacgttttgtatATGCgaAAAGTgcaT
Severe_acute_respiratory_syndrom AGA--AATTTGACACcTTCAAtGGGGA------------------ATGtCCAAAtTTTGT
SARS_coronavirus_civet007 AGA--AATTTGACACTTTCAAAGGGGA------------------ATGCCCAAAGTTTGT
SARS_coronavirus_GZ50 AGA--AATTTGACACTTTCAAAGGGGA------------------ATGCCCAAAGTTTGT
SARS_coronavirus_Taiwan_TC1 AGA--AATTTGACACTTTCAAAGGGGA------------------ATGCCCAAAGTTTGT
Bat_coronavirus_(BtCoV/273/2005) AGA--AATTTGACACTTTtAAAGGGGA------------------ATGCCCgAAGTTcGT
BtRf-BetaCoV/HeB2013 AGA--AATTTGACACTTTtAAAGGGGA------------------ATGCCCgAAGTTcGT
SARS_CORONAVIRUS cTTgaTCCTCaTAACTCAttgaatcataatAAAGTCtAg--CcTTaccCCAttTaTTaAA
Severe_acute_respiratory_syndrom ATT--TCCctTaAAtTCc------------AtAaTCAAgactATTCAACCAaGgGTTGAA
SARS_coronavirus_civet007 gTT--TCCTCTTAACTCA------------AAAGTCAAAGTCATTCAACCACGTGTTGAA
SARS_coronavirus_GZ50 gTT--TCCTCTTAACTCA------------AAAGTCAAAGTCATTCAACCACGTGTTGAA
SARS_coronavirus_Taiwan_TC1 gTT--TCCTCTTAACTCA------------AAAGTCAAAGTCATTCAACCACGTGTTGAA
Bat_coronavirus_(BtCoV/273/2005) ATT--TCCTCTcAACTCt------------AAAGTCAAAGTCATTCAACCACGTGTTGAA
BtRf-BetaCoV/HeB2013 ATT--TCCTCTcAACTCt------------AAAGTCAAAGTCATTCAACCACGTGTTGAA
SARS_CORONAVIRUS tgGAAAAccAgCTGAt--TTgtcTaGGttGTtgACGaT-----gACttgGTTaGCATtaa
Severe_acute_respiratory_syndrom AAGAAAAAGc-tTGAtGGcTTtATGGGtaGaATtCGaTCTGTcTAtCCAGTT-GCgTCaC
SARS_coronavirus_civet007 AAGAAAAAGA-CTGAGGGTTTCATGGGGCGTATACGCTCTGTGTACCCtGTT-GCATCTC
SARS_coronavirus_GZ50 AAGAAAAAGA-CTGAGGGTTTCATGGGGCGTATACGCTCTGTGTACCCtGTT-GCATCTC
SARS_coronavirus_Taiwan_TC1 AAGAAAAAGA-CTGAGGGTTTCATGGGGCGTATACGCTCTGTGTACCCtGTT-GCATCTC
Bat_coronavirus_(BtCoV/273/2005) AAGAAAAAGA-CTGAaGGTTTCATGGGGCGTATACGCTCTGTGTACCaAGTT-GCcaCTC
BtRf-BetaCoV/HeB2013 AAGAAAAAGA-CTGAaGGTTTCATGGGGCGTATACGCTCTGTGTACCaAGTT-GCcaCTC
SARS_CORONAVIRUS tACAGccaccAtcGTAACAAtcaAaGtACTTaTcaaCaACtTcaActAcAaaTAgTagTT
Severe_acute_respiratory_syndrom CAaAt----GAATGcAACcAa--ATGtgCcTtT---CaACtcTcATGAAgTGTgATCATT
SARS_coronavirus_civet007 CACAG----GAgTGTAACAAC--ATGCACTTGT---CTACCTTgATGAAATGTAATCATT
SARS_coronavirus_GZ50 CACAG----GAgTGTAACAAt--ATGCACTTGT---CTACCTTgATGAAATGTAATCATT
SARS_coronavirus_Taiwan_TC1 CACAG----GAgTGTAACAAt--ATGCACTTGT---CTACCTTgATGAAATGTAATCATT
Bat_coronavirus_(BtCoV/273/2005) CAaAt----GAATGcAACgAC--ATGCACTTGT---CTgtCTTtATGAAgTGcAATCATT
BtRf-BetaCoV/HeB2013 CAaAt----GAATGcAACgAC--ATGCACTTaT---CTgtCTTtATGAAgTGcAATCATT
SARS_CORONAVIRUS GtctgatatcacacattgttGgTagAtTaTaAcGatAGtaGTcatAaTcgCTGAtAGCag
Severe_acute_respiratory_syndrom G------------------tGgTGAAacTTCATGGCAGACGgGCGAtTTTgTtAAAGCCA
SARS_coronavirus_civet007 G------------------CGATGAAGTTTCATGGCAaACGTGCGACTTTCTGAAAGCCA
SARS_coronavirus_GZ50 G------------------CGATGAAGTTTCATGGCAGACGTGCGACTTTCTGAAAGCCA
SARS_coronavirus_Taiwan_TC1 G------------------CGATGAAGTTTCATGGCAGACGTGCGACTTTCTGAAAGCCA
Bat_coronavirus_(BtCoV/273/2005) G------------------tGATGAAGcTTCtTGGCAGACGTGtGAtTTTCTcAAAGCCA
BtRf-BetaCoV/HeB2013 G------------------CGATGAAGcTTCtTGGCAGACGTGtGAtTTTCTcAAAGCCA
SARS_CORONAVIRUS C--aTtAcCATccTGaGCAaaGAAgAagtgtTTTAaTT-caacAGaACtTcCTtCcTtaa
Severe_acute_respiratory_syndrom CTTGcGAAttTTGTG-GCACTGAgAA-----TTTgacTAaaGAAGGtgCcACTACtTGTG
SARS_coronavirus_civet007 CTTGTGAACATTGTG-GCACTGAAAA-----TTTAGTTAtTGAAGGACCTACTACATGTG
SARS_coronavirus_GZ50 CTTGTGAACATTGTG-GCACTGAAAA-----TTTAGTTAtTGAAGGACCTACTACATGTG
SARS_coronavirus_Taiwan_TC1 CTTGTGAACATTGTG-GCACTGAAAA-----TTTAGTTAtTGAAGGACCTACTACATGTG
Bat_coronavirus_(BtCoV/273/2005) CTTGTGAAtATTGTG-GCACTGAAAA-----TccAGTgAgTGgAGGACCTACTACATGTG
BtRf-BetaCoV/HeB2013 CTTGTGAAtATTGTG-GCACTGAAAA-----TccAGTTAgTGAAGGACCTACTACATGTG
SARS_CORONAVIRUS aGaAaCccttagACacAgcAAaGtcaTAGaagtctttgtTAAAAtTaCCggGTtTgaCaG
Severe_acute_respiratory_syndrom GtTACtT-----ACCccaaAATGCTGTtG----------TtAAAATttatTGT---CCaG
SARS_coronavirus_civet007 GGTACCT-----ACCTACTAATGCTGTAG----------TgAAAATGCCATGT---CCTG
SARS_coronavirus_GZ50 GGTACCT-----ACCTACTAATGCTGTAG----------TgAAAATGCCATGT---CCTG
SARS_coronavirus_Taiwan_TC1 GGTACCT-----ACCTACTAATGCTGTAG----------TgAAAATGCCATGT---CCTG
Bat_coronavirus_(BtCoV/273/2005) GGTACCT-----ACCTACTAATGCTGTAG----------TAAAgATGCCcTcTgTcCCTG
BtRf-BetaCoV/HeB2013 GGTACCT-----ACCTACTAATGCTGTAG----------TAAAgATGCCcTGT---CCcG
SARS_CORONAVIRUS ttTGaaAAGcaACAttGtTaGtAagTGcagctactgaaaAGCAcgTAGTgcgtttatcta
Severe_acute_respiratory_syndrom CaTGTCAcaAttCAGAagTaGGACCTG------------AGCA--TAGT-----------
SARS_coronavirus_civet007 CCTGTCAAGACcCAGAGATTGGACCTG------------AGCA--TAGT-----------
SARS_coronavirus_GZ50 CCTGTCAAGACcCAGAGATTGGACCTG------------AGCA--TAGT-----------
SARS_coronavirus_Taiwan_TC1 CCTGTCAAGACcCAGAGATTGGACCTG------------AGCA--TAGT-----------
Bat_coronavirus_(BtCoV/273/2005) CtTGTCAgaAtAaAGAagTgGGACCTG------------AGCA--TAGT-----------
BtRf-BetaCoV/HeB2013 CtTGTCAgaAtAaAGAagTgGGACCTG------------AGCA--TAGT-----------
SARS_CORONAVIRUS GTaatAGATTACCAgAAgCAgcgtgcatagcagggTCAgcAgCATacAcAagtaAtTCCt
Severe_acute_respiratory_syndrom cTTGCcGAaTACCAtAAtgA--------------aTCt--ggCtTgaAAACcattCTtCG
SARS_coronavirus_civet007 GTTGCAGATTAtCACAACCA--------------CTCA--AACATTGAAACTCGACTCCG
SARS_coronavirus_GZ50 GTTGCAGATTAtCACAACCA--------------CTCA--AACATTGAAACTCGACTCCG
SARS_coronavirus_Taiwan_TC1 GTTGCAGATTAtCACAACCA--------------CTCA--AACATTGAAACTCGACTCCG
Bat_coronavirus_(BtCoV/273/2005) GTTGCAGAcTACCACAAtCA--------------CTCA--AACATTGAAACTCGACTCCG
BtRf-BetaCoV/HeB2013 GTTGCgGAcTACCACAACCA--------------CTCA--AACATTGAAACTCGACTCCG
SARS_CORONAVIRUS tAA---AacTAaGtCTAGA----------GCTaTGTaagTTtacATccTGatTatgTAcA
Severe_acute_respiratory_syndrom tAAGGGtGGTcGcACTAttgccTTTGGAGGCTGTGTGTTcTCtTATGTTGGtTGC-cATA
SARS_coronavirus_civet007 CAAGGGAGGTAGGACTAGATGTTTTGGAGGCTGTGTGTTTgCCTATGTTGGCTGC-TATA
SARS_coronavirus_GZ50 CAAGGGAGGTAGGACTAGATGTTTTGGAGGCTGTGTGTTTgCCTATGTTGGCTGC-TATA
SARS_coronavirus_Taiwan_TC1 CAAGGGAGGTAGGACTAGATGTTTTGGAGGCTGTGTGTTTgCCTATGTTGGCTGC-TATA
Bat_coronavirus_(BtCoV/273/2005) CAAGGGAGGTAGGACTAaATGTTTTGGAGGCTGTGTGTTTTCCTATGTTGGCTGC-TATA
BtRf-BetaCoV/HeB2013 CAAGGGAGGTAGGACTAaATGTTTTGGAGGCTGTGTGTTTTCCTATGTTGGCTGC-TATA
SARS_CORONAVIRUS ACAcctAGCtctCtgAagtGGTatCcaGTtgaaaCTAcaaaTGgaAcAccaTCAAcaaAT
Severe_acute_respiratory_syndrom ACA---AGtGTGCCTAtTGGGTTCCaCGT----GCTAGcGCTaAcATAGGtTgtAACCAT
SARS_coronavirus_civet007 AtA---AGCGTGCCTACTGGGTTCCTCGT----GCTAGTGCTGATATtGGCTCAggCCAT
SARS_coronavirus_GZ50 AtA---AGCGTGCCTACTGGGTTCCTCGT----GCTAGTGCTGATATtGGCTCAggCCAT
SARS_coronavirus_Taiwan_TC1 AtA---AGCGTGCCTACTGGGTTCCTCGT----GCTAGTGCTGATATtGGCTCAggCCAT
Bat_coronavirus_(BtCoV/273/2005) ACA---AGCGTGCtTACTGGGTTCCTCGT----GCTAGTGCcGATATAGGtTCAAACCAT
BtRf-BetaCoV/HeB2013 ACA---AGCGTGCtTACTGGGTTCCTCGT----GCTAGTGCcGATATAGGtTCAAACCAT
SARS_CORONAVIRUS AtTtttcTcACTaGTG-----GTccAAAaCTTGtAaGtGGgaacaCTgtAGAgAaTaAAa
Severe_acute_respiratory_syndrom ACaGGtgTTgtTGGaGAaggTtccGAAggtcTtAATGAcaACCTtCTTGAaATACTccAa
SARS_coronavirus_civet007 ACTGGCATTACTGGTGACAATGTGGAgACCTTGAATGAGGAtCTCCTTGAGATACTGAgT
SARS_coronavirus_GZ50 ACTGGCATTACTGGTGACAATGTGGAgACCTTGAATGAGGAtCTCCTTGAGATACTGAgT
SARS_coronavirus_Taiwan_TC1 ACTGGCATTACTGGTGACAATGTGGAgACCTTGAATGAGGAtCTCCTTGAGATACTGAgT
Bat_coronavirus_(BtCoV/273/2005) ACTGGCATTACTGGTGACAATGTaGAAgttcTtAATGAaGACCTCCTTGAGATACTGAAT
BtRf-BetaCoV/HeB2013 ACTGGCATatCTGGTGACAATGTaGAAgttcTtAATGAaGACCTCCTTGAGATACTGAAT
SARS_CORONAVIRUS CaTtAAaGTttgcacaatgcagaatgcatctgtcatccaaacaGTTAACA-cAAttTgGg
Severe_acute_respiratory_syndrom aaaGAgaaa----------------------------------GTcAACATcAAtATTGT
SARS_coronavirus_civet007 CGTGAACGT----------------------------------GTTAACATTAACATTGT
SARS_coronavirus_GZ50 CGTGAACGT----------------------------------GTTAACATTAACATTGT
SARS_coronavirus_Taiwan_TC1 CGTGAACGT----------------------------------GTTAACATTAACATTGT
Bat_coronavirus_(BtCoV/273/2005) CGTGAACGT----------------------------------GTTAAtATTAACATTGT
BtRf-BetaCoV/HeB2013 CGTGAACGT----------------------------------GTTAAtATTAACATTGT
SARS_CORONAVIRUS TGGtatgTcTgATcccAATatttaAaATaaCggTCAaagagTTTTaaCcTCTcTTcCgtg
Severe_acute_respiratory_syndrom TGGtGAcTTTaAacTtAATG-AAGAGATcGCCATtA-----TTTTGGCATCTTTTTC---
SARS_coronavirus_civet007 TGGCGATTTTCATTTGAATG-AAGAGgTTGCCATCA-----TTTTGGCATCTTTcTC---
SARS_coronavirus_GZ50 TGGCGATTTTCATTTGAATG-AAGAGgTTGCCATCA-----TTTTGGCATCTTTcTC---
SARS_coronavirus_Taiwan_TC1 TGGCGATTTTCATTTGAATG-AAGAGgTTGCCATCA-----TTTTGGCATCTTTcTC---
Bat_coronavirus_(BtCoV/273/2005) TGGCGATTTTCAgTTGAATG-AAGAGATTGCCATCA-----TTTTaGCgTCTcTTTC---
BtRf-BetaCoV/HeB2013 TGGCGATTTTCAgTTGAATG-AAGAGATTGCCATCA-----TTTTaGCgTCTcTTTC---
SARS_CORONAVIRUS aagtcaTatTTtaACAAaTcccacttaatgtaaGgCTTTGTtaagtcagtgtcaacatgT
Severe_acute_respiratory_syndrom ------TGCTTCcACAAGT--------------GCtTTTGT------------------g
SARS_coronavirus_civet007 ------TGCTTCTACAAGT--------------GCCTTTaT------------------T
SARS_coronavirus_GZ50 ------TGCTTCTACAAGT--------------GCCTTTaT------------------T
SARS_coronavirus_Taiwan_TC1 ------TGCTTCTACAAGT--------------GCCTTTaT------------------T
Bat_coronavirus_(BtCoV/273/2005) ------TGCTTCTACgAGT--------------GCtTTTGT------------------T
BtRf-BetaCoV/HeB2013 ------TGCTTCTACgAGT--------------GCtTTTGT------------------T
SARS_CORONAVIRUS GACtCTGcAgttAaAGcCcTGgTcAaggttaatatAGgCaTTaAcAAtgAaTaaTaAGaa
Severe_acute_respiratory_syndrom GAaACTGTgA--AagGTtTgGATTAtA--------AagCaTTCAAAcaaATTGTTGAa--
SARS_coronavirus_civet007 GACACTaTAA--AGAGTCTTGATTACA--------AGTCTTTCAAAACCATTGTTGAG--
SARS_coronavirus_GZ50 GACACTaTAA--AGAGTCTTGATTACA--------AGTCTTTCAAAACCATTGTTGAG--
SARS_coronavirus_Taiwan_TC1 GACACTaTAA--AGAGTCTTGATTACA--------AGTCTTTCAAAACCATTGTTGAG--
Bat_coronavirus_(BtCoV/273/2005) GACACTGTAA--AGAGTCTTGATTACA--------AGTCTTTtAAAgCCATTGTTGAG--
BtRf-BetaCoV/HeB2013 GACACTGTAA--AGAGTCTTGATTACA--------AGTCTTTtAAAgCCATTGTTGAG--
SARS_CORONAVIRUS tcTaCaaCaGgAACtccactacctggcgtggtttgTATgAAaTcACCgAaatcAtaCCaG
Severe_acute_respiratory_syndrom --TCCTGtGGTAAt---------------------TtTAAAGTTACaAAaGGAAAagCta
SARS_coronavirus_civet007 --TCCTGCGGTAAC---------------------TATAAAGTTACCAAGGGAAAGCCCG
SARS_coronavirus_GZ50 --TCCTGCGGTAAC---------------------TATAAAGTTACCAAGGGAAAGCCCG
SARS_coronavirus_Taiwan_TC1 --TCCTGCGGTAAC---------------------TATAAAGTTACCAAGGGAAAGCCCG
Bat_coronavirus_(BtCoV/273/2005) --TCtTGCGGaAAC---------------------TAcAAAGTTACCAAGGGcAAGCCtG
BtRf-BetaCoV/HeB2013 --TCtTGCGGaAAC---------------------TAcAAAGTTACCAAGGGcAAGCCtG
SARS_CORONAVIRUS TtAcca----TTGagAtcTTGattAtCtaAtgTCAGTaCaccaacAAtACCAgcaTtTcG
Severe_acute_respiratory_syndrom aAAAAGGTGCcTGGAAtATTGGtgAACAGAAATCAaTaC-----TgAgtCCtCTtTaTGc
SARS_coronavirus_civet007 TAAAAGGTGCTTGGAACATTGGACAACAGAgATCAGTTt-----TAACACCACTGTGTGG
SARS_coronavirus_GZ50 TAAAAGGTGCTTGGAACATTGGACAACAGAgATCAGTTt-----TAACACCACTGTGTGG
SARS_coronavirus_Taiwan_TC1 TAAAAGGTGCTTGGAACATTGGACAACAGAgATCAGTTt-----TAACACCACTGTGTGG
Bat_coronavirus_(BtCoV/273/2005) TgAAAGGTGCTTGGAACATTGGACAACAaAAATCtaTTC-----TgACACCACTGTGTGG
BtRf-BetaCoV/HeB2013 TgAAAGGTGCTTGGAACATTGGACAACAaAAATCtaTTC-----TgACACCACTGTGTGG
SARS_CORONAVIRUS caTggCaTCACAGaaTtgTacTGTTtTtAacaaagcttggcgtacacgttcAcCtAagTT
Severe_acute_respiratory_syndrom ATTTgCaTCAgAGGCTGCTcGTGTTgTacG---------------------ATCAATTTT
SARS_coronavirus_civet007 tTTTCCCTCACAGGCTGCTGGTGTTATCAG---------------------ATCAATTTT
SARS_coronavirus_GZ50 tTTTCCCTCACAGGCTGCTGGTGTTATCAG---------------------ATCAATTTT
SARS_coronavirus_Taiwan_TC1 tTTTCCCTCACAGGCTGCTGGTGTTATCAG---------------------ATCAATTTT
Bat_coronavirus_(BtCoV/273/2005) ATTTCCCTCACAGGCTGCTGGTGTTATtAG---------------------ATCtATTTT
BtRf-BetaCoV/HeB2013 ATTTCCaTCACAGGCTGCTGGTGTTATtAG---------------------ATCtATTTT
SARS_CORONAVIRUS gGCGtatACgCgTaATatAtCtgggttttctacaAAAtCATaCcAgTCCTttTTaTtgAA
Severe_acute_respiratory_syndrom CtCcCGCACtCTTGAaaCtGC-------------tcAaaATTCtgTgCgTGtTT-TACAg
SARS_coronavirus_civet007 tGCGCGCACACTTGATGCAGC-------------AAACCAcTCAATTCCTGATT-TgCAA
SARS_coronavirus_GZ50 tGCGCGCACACTTGATGCAGC-------------AAACCAcTCAATTCCTGATT-TgCAA
SARS_coronavirus_Taiwan_TC1 tGCGCGCACACTTGATGCAGC-------------AAACCAcTCAATTCCTGATT-TgCAA
Bat_coronavirus_(BtCoV/273/2005) CtCtCGCACACTaGATGCAGC-------------AAAtaATTCtATcCCaGATT-TACAA
BtRf-BetaCoV/HeB2013 CtCtCGCACACTaGATGCAGC-------------AAAtaATTCtATcCCaGATT-TACAA
SARS_CORONAVIRUS AtAatcatcaTCACaAcAaTTGtATGtgacaaGTATTTCtttTaAtgtGTCACaAttaCc
Severe_acute_respiratory_syndrom AagGCcGCTaTaACaATACTaG-ATG------GaATTTC---acAgtAtTCACTgaGaCT
SARS_coronavirus_civet007 AGAGCAGCTGTCACCATACTTG-ATG------GTATTTt---TGAACAGTCAtTACGTCT
SARS_coronavirus_GZ50 AGAGCAGCTGTCACCATACTTG-ATG------GTATTTC---TGAACAGTCAtTACGTCT
SARS_coronavirus_Taiwan_TC1 AGAGCAGCTGTCACCATACTTG-ATG------GTATTTC---TGAACAGTCAtTACGTCT
Bat_coronavirus_(BtCoV/273/2005) AGAGCAGCTGTCACCATcCTcG-gTG------acATTTC---cGAACAGTCACTgCGTCT
BtRf-BetaCoV/HeB2013 AGAGCAGCTGTCACCATcCTTG-gTG------acATTTC---TGAACAGTCACTgCGTCT
SARS_CORONAVIRUS T-TCatCaaAATGccTTAaAgcatAGACgaGgTCtgCcAttGTGTatTTAgTAaGaCgTt
Severe_acute_respiratory_syndrom caTtGAtGCtATGaTgTtcACATCtGAttTGgctACtAACAaTcTagTTgTaATGGCcT-
SARS_coronavirus_civet007 TGTCGACGCAATGGTTTATACtTCAGACCTGCTCACCAACAGTGTCATTATTATGGCAT-
SARS_coronavirus_GZ50 TGTCGACGCcATGGTTTATACtTCAGACCTGCTCACCAACAGTGTCATTATTATGGCAT-
SARS_coronavirus_Taiwan_TC1 TGTCGACGCcATGGTTTATACtTCAGACCTGCTCACCAACAGTGTCATTATTATGGCAT-
Bat_coronavirus_(BtCoV/273/2005) TGTtGAtaCAATGGTgTgTACATCAGACtTGaTtACCAACAGTGTtATcATcATGGCAT-
BtRf-BetaCoV/HeB2013 TGTtGAtGCAATGGTgTgTACATCAGACtTGaTtACCAACAGTGTtATcATcATGGCAT-
SARS_CORONAVIRUS gacgTGaTAtatGTGGTaccaTgtcACcGtCTat----------TCTAAaCTTaaAGaag
Severe_acute_respiratory_syndrom ---AcaTTACaGGTGGTgTTGTtCAgttGACTTCGCAGTGGcTaaCTAAcaTcTTtGGCA
SARS_coronavirus_civet007 ---ATGTaACTGGTGGTCTTGTACAACAGACTTCtCAGTGGTTGTCTAATCTTTTgGGCA
SARS_coronavirus_GZ50 ---ATGTaACTGGTGGTCTTGTACAACAGACTTCtCAGTGGTTGTCTAATCTTTTgGGCA
SARS_coronavirus_Taiwan_TC1 ---ATGTaACTGGTGGTCTTGTACAACAGACTTCtCAGTGGTTGTCTAATCTTTTgGGCA
Bat_coronavirus_(BtCoV/273/2005) ---ATGTTACTGGTGGTCTTGTACAgCAaACagtGCAaTGGTTGTCTAATgTgTTAGGCA
BtRf-BetaCoV/HeB2013 ---ATGTTACTGGTGGTCTTGTACAgCAaACagtGCAaTGGTTGTCTAATgTgTTAGGCA
SARS_CORONAVIRUS tcAtgtTTagcAAcagCtGGaCaATCcTTaAgTaaATtaTaAattGtttCTTcATGttgg
Severe_acute_respiratory_syndrom CTgtTtaTGAAAAACTCAaaCCcgTCcTTGAtTGGcT--TGAaGaGAAgtTTAAgGa---
SARS_coronavirus_civet007 CTACTGTTGAAAAACTCAGGCCTATCTTTGAATGGAT--TGAGGCGAAACTTAgTGC---
SARS_coronavirus_GZ50 CTACTGTTGAAAAACTCAGGCCTATCTTTGAATGGAT--TGAGGCGAAACTTAgTGC---
SARS_coronavirus_Taiwan_TC1 CTACTGTTGAAAAACTCAGGCCTATCTTTGAATGGAT--TGAGGCGAAACTTAgTGC---
Bat_coronavirus_(BtCoV/273/2005) CcACaGTcGAcAAACTCAaaCCTgTaTTTacATGGcT--TGAGaCtAAgCTTAATGC---
BtRf-BetaCoV/HeB2013 CcACaGTcGAcAAACTCAaaCCTgTaTTTacATGGcT--TGAGaCtAAgCTTAATGC---
SARS_CORONAVIRUS tagttagAGaAagTGtGTcTCTtAActAcaaagtaagaatcaattaaattgtcatcttcg
Severe_acute_respiratory_syndrom -------AGGtGTaGAGTTTCTtAgaGA--------------------------------
SARS_coronavirus_civet007 -------AGGAGTTGAaTTTCTCAAGGA--------------------------------
SARS_coronavirus_GZ50 -------AGGAGTTGAaTTTCTCAAGGA--------------------------------
SARS_coronavirus_Taiwan_TC1 -------AGGAGTTGAaTTTCTCAAGGA--------------------------------
Bat_coronavirus_(BtCoV/273/2005) -------AGGAaTaGAGTTTCTCAAGGA--------------------------------
BtRf-BetaCoV/HeB2013 -------AGGAaTaGAGTTTCTCAAGGA--------------------------------
SARS_CORONAVIRUS tccttTtCTTGGaAGcgacaacaattagTTtTTAggAATTTagCAaaACcaGctacTTTa
Severe_acute_respiratory_syndrom -----cGgTTGGGAa------------ATTgTTA--AATTTaTCtcaACctGTGcTTgTG
SARS_coronavirus_civet007 -----TGCTTGGGAG------------ATTCTcA--AATTTCTCATTACAGGTGTTTTTG
SARS_coronavirus_GZ50 -----TGCTTGGGAG------------ATTCTcA--AATTTCTCATTACAGGTGTTTTTG
SARS_coronavirus_Taiwan_TC1 -----TGCTTGGGAG------------ATTCTcA--AATTTCTCATTACAGGTGTTTTTG
Bat_coronavirus_(BtCoV/273/2005) -----TGCTTGGGAa------------ATTCTTA--AATTcCTagTTACAGGTGTgTTTG
BtRf-BetaCoV/HeB2013 -----TGCTTGGGAa------------ATTCTTA--AATTcCTagTTACAGGTGTgTTTG
SARS_CORONAVIRUS tCATTGT-AgAtGTCAAAagC-----cCTgtAtACgACATCAgtactagtgcctgtgccG
Severe_acute_respiratory_syndrom AaATTGTCggtGGaCAAATtgtcacctgTgCAaAggAaATtAA----------------G
SARS_coronavirus_civet007 ACATcGTCAAgGGTCAAATACAGGTtgCTTCAGAtAACATCAA----------------G
SARS_coronavirus_GZ50 ACATcGTCAAgGGTCAAATACAGGTtgCTTCAGAtAACATCAA----------------G
SARS_coronavirus_Taiwan_TC1 ACATcGTCAAgGGTCAAATACAGGTtgCTTCAGAtAACATCAA----------------G
Bat_coronavirus_(BtCoV/273/2005) ACATTGTtAAAGGTCAAATACgGGTgttTTCgGACAACcTCAA----------------a
BtRf-BetaCoV/HeB2013 ACATTGTtAAAGGTCAAATACgGGTgttTTCAGACAACcTCAA----------------a
SARS_CORONAVIRUS cAcgGTGTAAgAcggGCTgCAcTtAcaccGcaAACc---CgtTtaAAAacgatTGTGCAT
Severe_acute_respiratory_syndrom GAgaGTGTtcAgA--caTTCtTTaAgcTTGTaAAtAAAttttTgGctt-----TGTGtgc
SARS_coronavirus_civet007 GATTGTGTAAAAt--GCTTCATTGATGTTGTTAACAAgGCACTCGAAA-----TGTGCAT
SARS_coronavirus_GZ50 GATTGTGTAAAAt--GCTTCATTGATGTTGTTAACAAgGCACTCGAAA-----TGTGCAT
SARS_coronavirus_Taiwan_TC1 GATTGTGTAAAAt--GCTTCATTGATGTTGTTAACAAgGCACTCGAAA-----TGTGCAT
Bat_coronavirus_(BtCoV/273/2005) GAaTGTGTAAAAA--ctTTtgTTGgTGTTGTcAACAAAGCgCTtGAAA-----TGTGCAT
BtRf-BetaCoV/HeB2013 GAaTGTGTAAAAA--ctTTtgTTGgTGTTGTcAAtAAAGCgCTtGAAA-----TGTGCAT
SARS_CORONAVIRUS cagCtgAcTgAagcatGggttCGCggAGTT--GATCAC--AACTacaGccAtaaCcTTtc
Severe_acute_respiratory_syndrom TGACtctaTCAtTATtGgTGGaGCtAAacTtAaAgCctTgAAtTTAGGTGAAacaTTTgT
SARS_coronavirus_civet007 TGAtCAAGTCACTATCGCTGGCGCAAAGTTGcGATCACTCAACTTAGGTGAAGTCTTcAT
SARS_coronavirus_GZ50 TGAtCAAGTCACTATCGCTGGCGCAAAGTTGcGATCACTCAACTTAGGTGAAGTCTTcAT
SARS_coronavirus_Taiwan_TC1 TGAtCAAGTCACTATCGCTGGCGCAAAGTTGcGATCACTCAACTTAGGTGAAGTCTTcAT
Bat_coronavirus_(BtCoV/273/2005) TGACCAAGTCACaATCGCaGGCaCcAAGgTGAGATCACTCAACcTtGGaGAgGTtTTTAT
BtRf-BetaCoV/HeB2013 TGACCAAGTCACaATCGCaGGCaCcAAGgTGAGATCACTCAACcTtGGaGAgGTtTTTAT
SARS_CORONAVIRUS CaCatAccGCA---GACggTACaGaCtGTGTtTTtaaGtgtaaaaccCAcAGGgtCatta
Severe_acute_respiratory_syndrom CaCGCActcaAAGGGAtTgTACaGaaAGTGTgTTaaat--------cCAgAGaAGa----
SARS_coronavirus_civet007 CGCtCAAAGCAAGGGACTtTACCGTCAGTGTATaCGTG--------GCA-AGGAGC----
SARS_coronavirus_GZ50 CGCtCAAAGCAAGGGACTtTACCGTCAGTGTATaCGTG--------GCA-AGGAGC----
SARS_coronavirus_Taiwan_TC1 CGCtCAAAGCAAGGGACTtTACCGTCAGTGTATaCGTG--------GCA-AGGAGC----
Bat_coronavirus_(BtCoV/273/2005) tGCGCAAAGCAAGGGcCTcTACCGTCAGTGTgTTCGTG--------GCA-AGGAGC----
BtRf-BetaCoV/HeB2013 tGCGCAAAGCAAGGGcCTcTAtCGTCAGTGTgTTCGTG--------GCA-AGGAGC----
SARS_CORONAVIRUS gcacaAGtTGtAggTAtTtgtacataCtTaCCTtTTAAGtCACaAAAtcctttAGgAttt
Severe_acute_respiratory_syndrom -----AaCTG-gcCTACT--------CATGCCTCTaAAaGCcCCAAA------AGAA---
SARS_coronavirus_civet007 -----AGCTGCAACTACT--------CATGCCTCTTAAGGCACCAAA------AGAA---
SARS_coronavirus_GZ50 -----AGCTGCAACTACT--------CATGCCTCTTAAGGCACCAAA------AGAA---
SARS_coronavirus_Taiwan_TC1 -----AGCTGCAACTACT--------CATGCCTCTTAAGGCACCAAA------AGAA---
Bat_coronavirus_(BtCoV/273/2005) -----AGCTGCAACTACT--------CATGCCTtTgAAGGCACCtAA------AGAA---
BtRf-BetaCoV/HeB2013 -----AGCTGCAACTACT--------CATGCCTtTgAAGGCACCtAA------AGAA---
SARS_CORONAVIRUS ggaTgAtCTaTgTgGcaAcGGcagTaCAgAcaACACgatgcaccaccaaaggattcttga
Severe_acute_respiratory_syndrom --aTtAtCTTctTaG--AgGGAGAaaCACtTccCACA-----------------------
SARS_coronavirus_civet007 --GTAACCTTTCTTG--AAGGtGATTCACATGACACA-----------------------
SARS_coronavirus_GZ50 --GTAACCTTTCTTG--AAGGtGATTCACATGACACA-----------------------
SARS_coronavirus_Taiwan_TC1 --GTAACCTTTCTTG--AAGGtGATTCACATGACACA-----------------------
Bat_coronavirus_(BtCoV/273/2005) --GTcACtTTcCTTG--AAGGAGAcTCACATGAtACA-----------------------
BtRf-BetaCoV/HeB2013 --GTcACtTTcCTTG--AAGGAGAcTCACATGAtACA-----------------------
SARS_CORONAVIRUS tccaTAtTggCtTCCGgtGtaacTGTTaTtgcctgacCAgtAcCaGTGtgtgtacacaac
Severe_acute_respiratory_syndrom ---GaAgTgttaaCaGAGGAaGTTGTctT--------gAAAActGGTG------------
SARS_coronavirus_civet007 ---GTACTTACCTCtGAGGAGGTTGTTCT--------CAAgAACGGTG------------
SARS_coronavirus_GZ50 ---GTACTTACCTCtGAGGAGGTTGTTCT--------CAAgAACGGTG------------
SARS_coronavirus_Taiwan_TC1 ---GTACTTACCTCtGAGGAGGTTGTTCT--------CAAgAACGGTG------------
Bat_coronavirus_(BtCoV/273/2005) ---GTACTaAtCTCCGAaGAGGTTGTTCT--------tAAAAAtGGTG------------
BtRf-BetaCoV/HeB2013 ---GTACTaAtCTCCGAaGAGGTTGTTCT--------tAAAAAtGGTG------------
SARS_CORONAVIRUS AtCTtaAcaCAaTtagtgattggttgtcccccactagCtAGAtAatCtTTGtaAGCTTtA
Severe_acute_respiratory_syndrom AttTacAAcCAtT------------------------aGAacaACCta------------
SARS_coronavirus_civet007 AACTCGAAGCACT------------------------CGAGACgCCCGTTGATAGCTTCA
SARS_coronavirus_GZ50 AACTCGAAGCACT------------------------CGAGACgCCCGTTGATAGCTTCA
SARS_coronavirus_Taiwan_TC1 AACTCGAAGCACT------------------------CGAGACgCCCGTTGATAGCTTCA
Bat_coronavirus_(BtCoV/273/2005) AgCTtGAAGCACT------------------------CGAGACACCaGTTGAcAGtTTCA
BtRf-BetaCoV/HeB2013 AgCTtGAAGCACT------------------------CGAGACACCaGTTGAcAGtTTCA
SARS_CORONAVIRUS gcagcatctacagcaaaagCAcAgaaAGaTAatacAGtTgaATTGGcaGGCACttCtGT-
Severe_acute_respiratory_syndrom -------------------CtAgTGaAGCTgTtgaAGcTccATTGGTTGGtACACCAGTt
SARS_coronavirus_civet007 -------------------CAAATGGAGCTATC------------GTTGGCAtACCAGTC
SARS_coronavirus_GZ50 -------------------CAAATGGAGCTATC------------GTTGGCACACCAGTC
SARS_coronavirus_Taiwan_TC1 -------------------CAAATGGAGCTATC------------GTTGGCACACCAGTC
Bat_coronavirus_(BtCoV/273/2005) -------------------CAAATGGAGCcgTC------------GTaGGCACtCCAGTt
BtRf-BetaCoV/HeB2013 -------------------ttAATGGAGCcgTC------------GTaGGCAatCCAGTt
SARS_CORONAVIRUS TGcaTtAccaGCtTgtagaCgTaCTgTggcAGcTaAActACcAAGtACcatacctctatt
Severe_acute_respiratory_syndrom TGTaTtAAcGGgCT-----tATGtTgcTcGAaATCAAAGACAcAGAAa------------
SARS_coronavirus_civet007 TGTGTAAATGGCCT-----CATGCTCTTAGAGATtAAgGACAAAGAAC------------
SARS_coronavirus_GZ50 TGTGTAAATGGCCT-----CATGCTCTTAGAGATtAAgGACAAAGAAC------------
SARS_coronavirus_Taiwan_TC1 TGTGTAAATGGCCT-----CATGCTCTTAGAGATtAAgGACAAAGAAC------------
Bat_coronavirus_(BtCoV/273/2005) TGTGTcAATGGCCT-----CATGCTCTTgGAGcTCAAAGAtAAgGAAC------------
BtRf-BetaCoV/HeB2013 TGTGTcAATGGCCT-----CATGCTCTTgGAGcTCAAAGAtAAgGAAC------------
SARS_CORONAVIRUS taggttgtttaatcctttaataaagtataAATACTtCaCtTTaggAcCTttaGGTgTgtc
Severe_acute_respiratory_syndrom -----------------------------AgTACTGtGCccT---tgCaCCTaaTaTgaT
SARS_coronavirus_civet007 -----------------------------AATACTGCGCATT---gTCTCCTGGTTTACT
SARS_coronavirus_GZ50 -----------------------------AATACTGCGCATT---gTCTCCTGGTTTACT
SARS_coronavirus_Taiwan_TC1 -----------------------------AATACTGCGCATT---gTCTCCTGGTTTACT
Bat_coronavirus_(BtCoV/273/2005) -----------------------------AgTAtTGtGCtTT---ATCTCCaGGcTTAtT
BtRf-BetaCoV/HeB2013 -----------------------------AgTAtTGtGCtTT---ATCTCCaGGcTTAtT
SARS_CORONAVIRUS tGtaACAAACctacaaggtggttccagttctgtatagatagtaccagttccatcactctt
Severe_acute_respiratory_syndrom GGtaACAAAC--------------------------------------------------
SARS_coronavirus_civet007 GGCTACAAAC--------------------------------------------------
SARS_coronavirus_GZ50 GGCTACAAAC--------------------------------------------------
SARS_coronavirus_Taiwan_TC1 GGCTACAAAC--------------------------------------------------
Bat_coronavirus_(BtCoV/273/2005) aGCTACAAAC--------------------------------------------------
BtRf-BetaCoV/HeB2013 aGCTACAAAC--------------------------------------------------
SARS_CORONAVIRUS agggAATcTagcCCatTTcAAAtcctGTaaAtCggaTAAcaGTGcAAgtacaaacctacc
Severe_acute_respiratory_syndrom ----AATacCTTCacacTcAAAGGcGGTGCACCAAcaAAgGtTa----------------
SARS_coronavirus_civet007 ----AATGTCTTtCGCTTAAAAGGGGGTGCACCAATTAAAGGTGTAA-------------
SARS_coronavirus_GZ50 ----AATGTCTTtCGCTTAAAAGGGGGTGCACCAATTAAAGGTGTAA-------------
SARS_coronavirus_Taiwan_TC1 ----AATGTCTTtCGCTTAAAAGGGGGTGCACCAATTAAAGGTGTAA-------------
Bat_coronavirus_(BtCoV/273/2005) ----AATGTCTTCCGtcTAAAtGGaGGTGCACCggTTAAAGGTGTAA-------------
BtRf-BetaCoV/HeB2013 ----AATGTtTTCCGtcTAAAtGGaGGTGCACCggTTAAAGGTGTAA-------------
SARS_CORONAVIRUS tcCCTTTGttgtgttgtagtaAGctaACgCatTgTcAtcAGTgCAAGcaGTTtgtgtagt
Severe_acute_respiratory_syndrom --CtTTTG------------GtGAtGACACTGTgaTAGAAGTgCAAG--GTT--------
SARS_coronavirus_civet007 --CCTTTG------------GAGAAGAtACTGTTTTtGAAGTTCAAG--GTT--------
SARS_coronavirus_GZ50 --CCTTTG------------GAGAAGAtACTGTTTggGAAGTTCAAG--GTT--------
SARS_coronavirus_Taiwan_TC1 --CCTTTG------------GAGAAGAtACTGTTTggGAAGTTCAAG--GTT--------
Bat_coronavirus_(BtCoV/273/2005) --CCTTTG------------GAGAAaACACTGTTTTAGAAGTTCAAG--GTT--------
BtRf-BetaCoV/HeB2013 --CCTTTG------------GAGAAaACACTGTTTTAGAAGTTCAAG--GTT--------
SARS_CORONAVIRUS accggcagcACAAGA-caTGAAtATCACtTTTGAaCTTGATGAAaGgaTTGAtAAAGTaC
Severe_acute_respiratory_syndrom ---------ACAAGAgTGTGAAtATCACtTTTGAaCTTGATGAAaGgaTTGAtAAAGTaC
SARS_coronavirus_civet007 ---------ACAAGAATGTGAgAATCACATTTGAGCTTGATGAACGTGTTGACAAAGTGC
SARS_coronavirus_GZ50 ---------ACAAGAATGTGAgAATCACATTTGAGCTTGATGAACGTGTTGACAAAGTGC
SARS_coronavirus_Taiwan_TC1 ---------ACAAGAATGTGAgAATCACATTTGAGCTTGATGAACGTGTTGACAAAGTGC
Bat_coronavirus_(BtCoV/273/2005) ---------ACAAGAATGTGAAAATCACATTTGAGCTTGATGAgCGTGTaGACAAAGTGC
BtRf-BetaCoV/HeB2013 ---------ACAAGAATGTGAAAATCACATTTGAGCTTGATGAgCGTGTaGACAAAGTGC
SARS_CORONAVIRUS TTAATGAGAAGTGCTCTGcCTAtACaGTTGAActCGGTACAGAAGTaAaTGAGTTCGCcT
Severe_acute_respiratory_syndrom TTAATGAGAAGTGCTCTGcCTAtACaGTTGAActCGGTACAGAAGTaAaTGAGTTCGCcT
SARS_coronavirus_civet007 TTAATGAaAAGTGCTCTGTCTACACTGTTGAATCCGGTACcGAAGTTACTGAGTTtGCAT
SARS_coronavirus_GZ50 TTAATGAaAAGTGCTCTGTCTACACTGTTGAATCCGGTACcGAAGTTACTGAGTTtGCAT
SARS_coronavirus_Taiwan_TC1 TTAATGAaAAGTGCTCTGTCTACACTGTTGAATCCGGTACcGAAGTTACTGAGTTtGCAT
Bat_coronavirus_(BtCoV/273/2005) TTAAcGAGAAGTGtTCTGTCTACACTGTTGAATCCGGTACAGAgGTTACTGAaTTCGCAT
BtRf-BetaCoV/HeB2013 TTAATGAGAAGTGtTCTGTCTACACTGTTGAATCCGGTACAGAgGTTACTGAaTTCGCAT
SARS_CORONAVIRUS GTGTTGTgGCAGAtGCTGTcaTAAAAACTTTGCAACCAGTaTCTGAatTaCTTACaccac
Severe_acute_respiratory_syndrom GTGTTGTgGCAGAtGCTGTcaTAAAAACTTTGCAACCAGTaTCTGAatTaCTTACaccac
SARS_coronavirus_civet007 GTGTTGTAGCAGAGGCTGTTGTgAAgACTTTaCAACCAGTTTCTGATCTCCTTACCAACA
SARS_coronavirus_GZ50 GTGTTGTAGCAGAGGCTGTTGTgAAgACTTTaCAACCAGTTTCTGATCTCCTTACCAACA
SARS_coronavirus_Taiwan_TC1 GTGTTGTAGCAGAGGCTGTTGTgAAgACTTTaCAACCAGTTTCTGATCTCCTTACCAACA
Bat_coronavirus_(BtCoV/273/2005) GTGTTGTtGCAGAaGCcGTTGTAAAAACTTTGCAACCAGTTTCTGAcCTtCTTACtAAgA
BtRf-BetaCoV/HeB2013 GTGTTGTtGCAGAaGCcGTTGTAAAAACTTTGCAACCAGTTTCTGAcCTtCTTACtAAgA
SARS_CORONAVIRUS TGGGcATTGATtTaGATGAGTGGAGTaTgGCTACATaCTACTTATTTGATGAgtCTGGTG
Severe_acute_respiratory_syndrom TGGGcATTGATtTaGATGAGTGGAGTaTgGCTACATaCTACTTATTTGATGAgtCTGGTG
SARS_coronavirus_civet007 TGGGTATTGATCTTGATGAGTGGAGTGTAGCTACATTCTACTTATTTGATGATGCTGGTG
SARS_coronavirus_GZ50 TGGGTATTGATCTTGATGAGTGGAGTGTAGCTACATTCTACTTATTTGATGATGCTGGTG
SARS_coronavirus_Taiwan_TC1 TGGGTATTGATCTTGATGAGTGGAGTGTAGCTACATTCTACTTATTTGATGATGCTGGTG
Bat_coronavirus_(BtCoV/273/2005) TGGGTATTGAcCTTGATGAGTGGAGTGTAGCTACATTCTACTTgTTTGATGATGCTGGTG
BtRf-BetaCoV/HeB2013 TGGGTATTGAcCTTGAcGAGTGGAGTGTAGCTACATTCTACTTgTTTGATGATGCTGGTG
SARS_CORONAVIRUS AgtttAAATTggCtTCACaTATGTATTGTTCtTTTTACCCTCCAGATGAGGAtGAAGAaG
Severe_acute_respiratory_syndrom AgtttAAATTggCtTCACaTATGTATTGTTCtTTcTACCCTCCAGATGAGGAtGAAGAaG
SARS_coronavirus_civet007 AAGAAAAcTTTTCATCACGTATGTATTGTTCCTTTTACCCTCCAGATGAGGAAGAAGAGG
SARS_coronavirus_GZ50 AAGAAAAcTTTTCATCACGTATGTATTGTTCCTTTTACCCTCCAGATGAGGAAGAAGAGG
SARS_coronavirus_Taiwan_TC1 AAGAAAAcTTTTCATCACGTATGTATTGTTCCTTTTACCCTCCAGATGAGGAAGAAGAGG
Bat_coronavirus_(BtCoV/273/2005) AAGAAAAAcTTTCATCACGcATGTAcTGTTCCTTcTACCCTCCtGATGAGGAAGAAGAct
BtRf-BetaCoV/HeB2013 AAGAAAAAcTTTCATCACGcATGTAcTGTTCCTTcTACCCTCCtGATGAGGAAGAAGAct
SARS_CORONAVIRUS AaGgT------GAtTGTGAaGAAGAAGAgtTTGAgccAtCaacTcAAtATGAGTAtGGTA
Severe_acute_respiratory_syndrom AaGgT------GAtTGTGAaGAAGAAGAgtTTGAgccAtCaacTcAAtATGAGTAtGGTA
SARS_coronavirus_civet007 ACGATGCA---GAGTGTGAGGAAGAAGAAATTGATGAAACCTGTGAACATGAGTACGGTA
SARS_coronavirus_GZ50 ACGATGCA---GAGTGTGAGGAAGAAGAAATTGATGAAACCTGTGAACATGAGTACGGTA
SARS_coronavirus_Taiwan_TC1 ACGATGCA---GAGTGTGAGGAAGAAGAAATTGATGAAACCTGTGAACATGAGTACGGTA
Bat_coronavirus_(BtCoV/273/2005) gCGAaGagTATGAGgaTGAGGAAGAAGttccTGATGAAACCTGTGAACAcGAaTACGGcA
BtRf-BetaCoV/HeB2013 gCGAaGagTATGAGgGTGAGGAAGAAGttccTGATGgAACCTGTGAACATGAaTACGGcA
SARS_CORONAVIRUS CtGAaGATGATTAcCAAGGTaaaCCTtTGGAATTTGGTGCCaCttCTGctgCtCTTCAAc
Severe_acute_respiratory_syndrom CtGAaGATGATTAcCAAGGTaaaCCTtTGGAATTTGGTGCCaCttCTGctgCtCTTCAAc
SARS_coronavirus_civet007 CAGAGGATGATTATCAAGGTCTCCCTCTGGAATTTGGTGCCTCAGCTGAAACAgTTCgAG
SARS_coronavirus_GZ50 CAGAGGATGATTATCAAGGTCTCCCTCTGGAATTTGGTGCCTCAGCTGAAACAgTTCgAG
SARS_coronavirus_Taiwan_TC1 CAGAGGATGATTATCAAGGTCTCCCTCTGGAATTTGGTGCCTCAGCTGAAACAgTTCgAG
Bat_coronavirus_(BtCoV/273/2005) CAGAGGATGAcTATaAAGGTCTtCCTCTtGAgTTTGGTtCgTCAaCaGAAAtACaaCAgG
BtRf-BetaCoV/HeB2013 CAGAGGATGAcTATaAAGGTCTtCCTCTtGAgTTTGGTtCgTCAaCaGAAAtACaaCAgG
SARS_CORONAVIRUS cTGAAGAAGAgcAAGAaGAAGAtTGGtTaGATGATGaTAGTc-AaCAAaCtGttggTcAA
Severe_acute_respiratory_syndrom cTGAAGAAGAgcAAGAaGAAGAtTGGtTaGATGATGaTAGTc-AaCAAaCtGttggTcAA
SARS_coronavirus_civet007 TTGAgGAAGAAGAAGAGGAAGACTGGCTGGATGATaCTAcTG-AGCAATCAGAGATTGAg
SARS_coronavirus_GZ50 TTGAgGAAGAAGAAGAGGAAGACTGGCTGGATGATaCTAcTG-AGCAATCAGAGATTGAg
SARS_coronavirus_Taiwan_TC1 TTGAgGAAGAAGAAGAGGAAGACTGGCTGGATGATaCTAcTG-AGCAATCAGAGATTGAg
Bat_coronavirus_(BtCoV/273/2005) TT---GAAGAtGAAGAGGAAGACTGGCTtGATGATGtTgGTGAAGCA----------GAA
BtRf-BetaCoV/HeB2013 T---AGAcGAtGAAGAGGAAGACTGGCTtGATGATGCTgGTGAAGCA----------GAA
SARS_CORONAVIRUS CaAGACGGCAGTGAGGACAAtCAGACAACTACTATTCAAACAATTGTTGAGGTTCAaCct
Severe_acute_respiratory_syndrom CaAGACGGCAGTGAGGACAAtCAGACAACTACTATTCAAACAATTGTTGAGGTTCAaCct
SARS_coronavirus_civet007 CCAG--------------AACCAGA------------------------------ACCTA
SARS_coronavirus_GZ50 CCAG--------------AACCAGA------------------------------ACCTA
SARS_coronavirus_Taiwan_TC1 CCAG--------------AACCAGA------------------------------ACCTA
Bat_coronavirus_(BtCoV/273/2005) CCtG--------------AACCAGA------------------------------ACCTc
BtRf-BetaCoV/HeB2013 CCtG--------------AACCAGA------------------------------ACCTc
SARS_CORONAVIRUS CAatTagAGATGGAACTTACACCAGTTgtTCAGACTATTGAAGTGAATAGTTTTAgTGGT
Severe_acute_respiratory_syndrom CAatTagAGATGGAACTTACACCAGTTgtTCAGACTATTGAAGTGAATAGTTTTAgTGGT
SARS_coronavirus_civet007 CACCTGAAGA----------ACCAGTTAATCAG------------------TTTACTGGT
SARS_coronavirus_GZ50 CACCTGAAGA----------ACCAGTTAATCAG------------------TTTACTGGT
SARS_coronavirus_Taiwan_TC1 CACCTGAAGA----------ACCAGTTAATCAG------------------TTTACTGGT
Bat_coronavirus_(BtCoV/273/2005) tACCTGcAGA----------ACCAGTTAATCAG------------------TTTACTGGT
BtRf-BetaCoV/HeB2013 tACCTGAAGA----------ACCAGTTAATCAG------------------TTTACTGGT
SARS_CORONAVIRUS TATTTAAAACTTACTGACAATGTataCATTAAAaaTGcaGACATtGTggAaGAAGCtaAA
Severe_acute_respiratory_syndrom TATTTAAAACTTACTGACAATGTataCATTAAAaaTGcaGACATtGTggAaGAAGCtaAA
SARS_coronavirus_civet007 TATTTAAAACTTACTGACAATGTTGCCATTAAATGTGTTGACATCGTTAAGGAgGCACAA
SARS_coronavirus_GZ50 TATTTAAAACTTACTGACAATGTTGCCATTAAATGTGTTGACATCGTTAAGGAgGCACAA
SARS_coronavirus_Taiwan_TC1 TATTTAAAACTTACTGACAATGTTGCCATTAAATGTGTTGACATCGTTAAGGAgGCACAA
Bat_coronavirus_(BtCoV/273/2005) TAcTTtAAACTTACTGACAATGTTGCCATTAAATGTGTTGACATCGTTAAGGAAGCgCAA
BtRf-BetaCoV/HeB2013 TAcTTtAAACTcACTGACAATGTTGCCATTAAATGTGTTGACATCGTTAAGGAAGCgCAA
SARS_CORONAVIRUS AagGtaAAACCaACaGTGgTTGTTAATGCaGCcAAtgTttACCTtAAACATGGaGGaGGT
Severe_acute_respiratory_syndrom AagGtaAAACCaACaGTGgTTGTTAATGCaGCcAAtgTttACCTtAAACATGGaGGaGGT
SARS_coronavirus_civet007 AGTGCTAAtCCTAtGGTGATTGTaAATGCTGCTAACATACACCTGAAACATGGTGGTGGT
SARS_coronavirus_GZ50 AGTGCTAAtCCTAtGGTGATTGTaAATGCTGCTAACATACACCTGAAACATGGTGGTGGT
SARS_coronavirus_Taiwan_TC1 AGTGCTAAtCCTAtGGTGATTGTaAATGCTGCTAACATACACCTGAAACATGGTGGTGGT
Bat_coronavirus_(BtCoV/273/2005) AGTGCcAAACCTgCGGTtATTGTTAATGCTGCTAACATtCACCTaAAACATGGTGGTGGT
BtRf-BetaCoV/HeB2013 AGTGCcAAACCggCGGTGATTGTTAAcGCTGCTAACATcCACCTaAAACATGGTGGTGGT
SARS_CORONAVIRUS GTtGCAGGaGCctTaAAtAAGGCtACtAAcaaTGCCATGCAAgttGAatcTGATGATTAC
Severe_acute_respiratory_syndrom GTtGCAGGaGCctTaAAtAAGGCtACtAAcaaTGCCATGCAAgttGAatcTGATGATTAC
SARS_coronavirus_civet007 GTAGCAGGTGCACTCAACAAGGCAACCAATGGTGCCATGCAAAAGGAGAGTGATGATTAC
SARS_coronavirus_GZ50 GTAGCAGGTGCACTCAACAAGGCAACCAATGGTGCCATGCAAAAGGAGAGTGATGATTAC
SARS_coronavirus_Taiwan_TC1 GTAGCAGGTGCACTCAACAAGGCAACCAATGGTGCCATGCAAAAGGAGAGTGATGATTAC
Bat_coronavirus_(BtCoV/273/2005) GTAGCAGGTGCACTCAACAAaGCAACCAATGGTGCCATGCAAcAGGAGAGTGATGATTAC
BtRf-BetaCoV/HeB2013 GTAGCAGGTGCACTCAACAAGGCAACtAATGGTGCCATGCAAcAGGAGAGTGATGATTAC
SARS_CORONAVIRUS AT--AGCTACTAATGGACCACTTAaAGTgGGTGGTagTTGTgTttTaagcGGACACAATC
Severe_acute_respiratory_syndrom AT--AGCTACTAATGGACCACTTAaAGTgGGTGGTagTTGTgTttTaagcGGACACAATC
SARS_coronavirus_civet007 ATTAAGCTA--AATGGcCCtCTTACAGTAGGaGGgTCTTGTTTGCTTTCTGGACAtAATC
SARS_coronavirus_GZ50 ATTAAGCTA--AATGGcCCtCTTACAGTAGGaGGgTCTTGTTTGCTTTCTGGACAtAATC
SARS_coronavirus_Taiwan_TC1 ATTAAGCTA--AATGGcCCtCTTACAGTAGGaGGgTCTTGTTTGCTTTCTGGACAtAATC
Bat_coronavirus_(BtCoV/273/2005) ATTAAaCgA--AATGGACCACTcACAGTAGGTGGTTCaTGTTTGCTTTCTGGACACAATt
BtRf-BetaCoV/HeB2013 ATTAAaCgA--AATGGACCACTcACAGTAGGTGGTTCaTGTTTGCTTTCTGGACACAATt
SARS_CORONAVIRUS TTGCTAAacAcTGTCTtCATGTTGTcGGCCCAAAtgTtAAcaaAGGTGAaGACATtCAAC
Severe_acute_respiratory_syndrom TTGCTAAacAcTGTCTtCATGTTGTcGGCCCAAAtgTtAAcaaAGGTGAaGACATtCAAC
SARS_coronavirus_civet007 TTGCTAAGAAGTGTCTGCATGTTGTTGGaCCtAACCTAAAcGCAGGTGAGGACATCCggC
SARS_coronavirus_GZ50 TTGCTAAGAAGTGTCTGCATGTTGTTGGaCCtAACCTAAATGCtGGTGAGGACATCCAgC
SARS_coronavirus_Taiwan_TC1 TTGCTAAGAAGTGTCTGCATGTTGTTGGaCCtAACCTAAATGCAGGTGAGGACATCCAgC
Bat_coronavirus_(BtCoV/273/2005) TgGCTAAGAAGTGTaTGCATGTTGTTGGCCCAAACCTAAATGCtGGTGAGGAtATCCAAC
BtRf-BetaCoV/HeB2013 TgGCTAAGAAGTGTaTGCATGTTGTTGGCCCAAACCTAAATGCtGGTGAtGAtgTCCAAC
SARS_CORONAVIRUS TTCTTAAGagTGCtTATGAAAATTTTAATcagCAcGAaGTtcTACTTGCACCATTATTaT
Severe_acute_respiratory_syndrom TTCTTAAGagTGCtTATGAAAATTTTAATcagCAcGAaGTtcTACTTGCACCATTATTaT
SARS_coronavirus_civet007 TTCTTAAGGCaGCATATGAAAATTTcAATTCACAGGACacCTTACTTGCACCATTgTTGT
SARS_coronavirus_GZ50 TTCTTAAGGCaGCATATGAAAATTTcAATTCACAGGACaTCTTACTTGCACCATTgTTGT
SARS_coronavirus_Taiwan_TC1 TTCTTAAGGCaGCATATGAAAATTTcAATTCACAGGACaTCTTACTTGCACCATTgTTGT
Bat_coronavirus_(BtCoV/273/2005) TaCTTAAaGCTGCATATGAcAAcTTTAATTCACAGGACGTaTTACTTGCACCAcTAcTGT
BtRf-BetaCoV/HeB2013 TaCTTAAaGCTGCATATaAcAAcTTTAATTCACAGGACGTaTTACTTGCACCAcTAcTGT
SARS_CORONAVIRUS CAGCtGGtATtTTTGGTGCTgAcCCtaTaCAtTCTTTAAgAGTtTGTGTagtctcttgta
Severe_acute_respiratory_syndrom CAGCtGGtATtTTTGGTGCTgAcCCtaTaCAtTCTTTAAgAGTtTGTGTa----------
SARS_coronavirus_civet007 CAGCAGGCATATTTGGTGCTAAACCACTTCAGTCTTTAcAAGTGTGcGTG----------
SARS_coronavirus_GZ50 CAGCAGGCATATTTGGTGCTAAACCACTTCAGTCTTTAcAAGTGTGcGTG----------
SARS_coronavirus_Taiwan_TC1 CAGCAGGCATATTTGGTGCTAAACCACTTCAGTCTTTAcAAGTGTGcGTG----------
Bat_coronavirus_(BtCoV/273/2005) CAGCAGGCATATTTGGTGCTAAACCACTTCAGTCTTTAAAgaTGTGTGTt----------
BtRf-BetaCoV/HeB2013 CAGCAGGCATATTTGGTGCTAAACCACTTCAGTCTTTAAAgaTGTGTGTt----------
SARS_CORONAVIRUS gatctgttctctAAACGaactttaaaatctgtgtggctgtcacTCGgctgCAtGcTTAgt
Severe_acute_respiratory_syndrom -----------gAtACt------------------------GTTCGCACAaAtGTcTAC-
SARS_coronavirus_civet007 -----------CAgACG------------------------GTTCGtACACAGGTTTAt-
SARS_coronavirus_GZ50 -----------CAgACG------------------------GTTCGtACACAGGTTTAt-
SARS_coronavirus_Taiwan_TC1 -----------CAgACG------------------------GTTCGtACACAGGTTTAt-
Bat_coronavirus_(BtCoV/273/2005) -----------gAAgta------------------------GTTCGCACACAaGTTTAC-
BtRf-BetaCoV/HeB2013 -----------gAAgta------------------------GTTCGCACACAaGTTTAC-
SARS_CORONAVIRUS gcactcacgcagtataattaataactaATTaCtGTCgtTGACAggacacgagtaactcgt
Severe_acute_respiratory_syndrom ---------------------------tTaGCtGTCttTGAtA-----------------
SARS_coronavirus_civet007 ---------------------------ATTGCAGTCAATGACA-----------------
SARS_coronavirus_GZ50 ---------------------------ATTGCAGTCAATGACA-----------------
SARS_coronavirus_Taiwan_TC1 ---------------------------ATTGCAGTCAATGACA-----------------
Bat_coronavirus_(BtCoV/273/2005) ---------------------------cTcGCgGTCAATGAtA-----------------
BtRf-BetaCoV/HeB2013 ---------------------------cTcGCAGTCAATGAtA-----------------
SARS_CORONAVIRUS ctatcttctgcAgGCTgcTTAcGgtttcgtcCgtGTTGcAgccGATcATCaGcACAtCta
Severe_acute_respiratory_syndrom -----------AAaaTCTcTATGAc------aAacTTGTttcAagcTtTtTGGAaA----
SARS_coronavirus_civet007 -----------AAGCTCTTTATGAg------CAGGTTGTcATgGATTATCTtGAtAAC--
SARS_coronavirus_GZ50 -----------AAGCTCTTTATGAg------CAGGTTGTcATgGATTATCTtGAtAAC--
SARS_coronavirus_Taiwan_TC1 -----------AAGCTCTTTATGAg------CAGGTTGTcATgGATTATCTtGAtAAC--
Bat_coronavirus_(BtCoV/273/2005) -----------ggagTCTTTATGAt------CAGGTTGTAtTAGATTATCTGGACAgt--
BtRf-BetaCoV/HeB2013 -----------ggagTCTTTATGAt------CAGGTTGTAtTAGATTATCTGGACAgt--
SARS_CORONAVIRUS ggttttgtccgggtgtgaCcGAAaggTAAgaTGGAgagcCtTgtcCctGgttTCaacGAG
Severe_acute_respiratory_syndrom -------------------TGAAGagTgAAaaGcAAG---tTgAACAAaAGaTCgctGAG
SARS_coronavirus_civet007 ------------------CTGAAGCCTAgAGTGGAAGCACCTAAACAAGAG------GAG
SARS_coronavirus_GZ50 ------------------CTGAAGCCTAgAGTGGAAGCACCTAAACAAGAG------GAG
SARS_coronavirus_Taiwan_TC1 ------------------CTGAAGCCTAgAGTGGAAGCACCTAAACAAGAG------GAG
Bat_coronavirus_(BtCoV/273/2005) ------------------tTGAAaCCTAAAGTGGAgtCtCCcAAAaAgGAG------GAG
BtRf-BetaCoV/HeB2013 ------------------tTGAAaCCTAAAGTGGAgtCtCCcAAgaAgGAG------GAG
SARS_CORONAVIRUS AAAaCAcACg--------------TCCAActCaG----tttgcCT---GTttTACAGgtt
Severe_acute_respiratory_syndrom AttCCtAAagagGAAGtTaagccaTttAtAACTGAAagtAAAcCTtcaGTtGaACAGAgA
SARS_coronavirus_civet007 ccACCAAACACAGAAGAT------TCCAAAACTGAgGAGAAAtCT---GTCGTACAGAAg
SARS_coronavirus_GZ50 ccACCAAACACAGAAGAT------TCCAAAACTGAgGAGAAAtCT---GTCGTACAGAAg
SARS_coronavirus_Taiwan_TC1 ccACCAAACACAGAAGAT------TCCAAAACTGAgGAGAAAtCc---GTCGTACAGAAg
Bat_coronavirus_(BtCoV/273/2005) AAtCCAAAattgGAAGAg------catAAAgCgaAAcAGccAgCT---G------AaAAA
BtRf-BetaCoV/HeB2013 AAtCCAAAattgGAAGAg------cCtAAAgCgaAAcAGccAgCT---G------AaAAA
SARS_CORONAVIRUS CgcGaCGtgcTcgtaCgtggctTTggaGaCTcCGTgGAgGAGGTc------ttAtcaGAg
Severe_acute_respiratory_syndrom aaacaaGATGatAAG---AAAATcAAaGCtTGtGTTGAAGAaGTTACaACAACtCTGGAA
SARS_coronavirus_civet007 CCTGTCGATGTgAAGCCAAAAATTAAGGCCTGCaTTGAtGAGGTTACCACAACACTGGAA
SARS_coronavirus_GZ50 CCTGTCGATGTgAAGCCAAAAATTAAGGCCTGCaTTGAtGAGGTTACCACAACACTGGAA
SARS_coronavirus_Taiwan_TC1 CCTGTCGATGTgAAGCCAAAAATTAAGGCCTGCaTTGAtGAGGTTACCACAACACTGGAA
Bat_coronavirus_(BtCoV/273/2005) CCTGTtGAcGTcAAaCCtAAAATTAAGGCtTGtGTcGAAGAGGTTACtACAACAtTGGAA
BtRf-BetaCoV/HeB2013 CCTGTtGAcGTtAAaCCtAAAATTAAGGCtTGtGTcGAAGAGGTTACtACAACAtTGGAA
SARS_CORONAVIRUS GcAcgTcAacaTCTTA----AAgaTgGCaCTTGTggctTagTAgaAgTtGaAAaaggcGt
Severe_acute_respiratory_syndrom GAAACTAAGTTcCTcACagAAAAcTTGtTacTtTaTatTGAcATtAATGGcAA-----tC
SARS_coronavirus_civet007 GAAACTAAGTTTCTTACCAAtAAgTTaCTCTTGTTTGCTGATATCAATGGTAA-----GC
SARS_coronavirus_GZ50 GAAACTAAGTTTCTTACCAAtAAgTTaCTCTTGTTTGCTGATATCAATGGTAA-----GC
SARS_coronavirus_Taiwan_TC1 GAAACTAAGTTTCTTACCAAtAAgTTaCTCTTGTTTGCTGATATCAATGGTAA-----GC
Bat_coronavirus_(BtCoV/273/2005) GAAACTAAacTTCTcACCcAAAAtcTGCTtcTtTTTGCTGATATCAATGGTAA-----aC
BtRf-BetaCoV/HeB2013 GAAACTAAacTTCTTACtcgAAAccTGCTtcTtTTTGCTGATATCAATGGTAA-----aC
SARS_CORONAVIRUS TTTgCCtcaacttgaacagccctatgtgttcatcaaacgttCGGATgCTCgaAcTgcaCc
Severe_acute_respiratory_syndrom TTcAtC-----------------------------------CaGATTCTgccAcTcTtgT
SARS_coronavirus_civet007 TTTACC-----------------------------------atGATTCTCAGAAcATGCT
SARS_coronavirus_GZ50 TTTACC-----------------------------------atGATTCTCAGAAcATGCT
SARS_coronavirus_Taiwan_TC1 TTTACC-----------------------------------atGATTCTCAGAAcATGCT
Bat_coronavirus_(BtCoV/273/2005) TTTACC-----------------------------------CGGATTCTCAGAATATGCT
BtRf-BetaCoV/HeB2013 TTTACC-----------------------------------CGGATTCTCAGAATATGtT
SARS_CORONAVIRUS TcatGGTcAtGtTATGgtTgagCTgGtagcAGAActcGaAgGCAttcagTAcGGTcG---
Severe_acute_respiratory_syndrom TAGtGacattGAcATcaCTTTCtTAa----AGAA---aGATGCtCCATATATaGTgGGTG
SARS_coronavirus_civet007 TAGAGGTGAAGATATGTCTTTCCTtG----AGAA---GGATGCACCtTAcATGGTAGGTG
SARS_coronavirus_GZ50 TAGAGGTGAAGATATGTCTTTCCTtG----AGAA---GGATGCACCtTAcATGGTAGGTG
SARS_coronavirus_Taiwan_TC1 TAGAGGTGAAGATATGTCTTTCCTtG----AGAA---GGATGCACCtTAcATGGTAGGTG
Bat_coronavirus_(BtCoV/273/2005) aAGAGGTGAAGAcATGTCTTTtCTAG----AaAA---GGAcGCACCATATgTaGTAGGTG
BtRf-BetaCoV/HeB2013 aAGAGGTGAAGATATGTCTTTtCTAG----AaAA---GGAcGCACCATATgTaGTAGGTG
SARS_CORONAVIRUS ----------TAGTGGTGAgAcactTgGTGTccTtgTcCCTcaTgtgggcgAAAtaCcaG
Severe_acute_respiratory_syndrom ATGTTgTtcaagagGGTGtTtTaACTgcTGTgGTtATACCTaCTA-----AAAAGGCTGG
SARS_coronavirus_civet007 ATGTTATCACTAGTGGTGATATCACTTGTGTTGTAATACCctCcA-----AAAAGaCTGG
SARS_coronavirus_GZ50 ATGTTATCACTAGTGGTGATATCACTTGTGTTGTAATACCctCcA-----AAAAGGCTGG
SARS_coronavirus_Taiwan_TC1 ATGTTATCACTAGTGGTGATATCACTTGTGTTGTAATACCctCcA-----AAAAGGCTGG
Bat_coronavirus_(BtCoV/273/2005) ATGTcATCACTAGTGGTGATATtACTTGTGTTaTAATACCTgCTA-----AgAAGGCTGG
BtRf-BetaCoV/HeB2013 ATGTcATCACTAGTGGTGATATtACTTGTGTTaTAATACCTgCTA-----AgAAGGCTGG
SARS_CORONAVIRUS TGGC-tTACcGcAAgGtTCTtcttcgtAAGAaCggTaAtaAAgGaGCtgGTGGccATagt
Severe_acute_respiratory_syndrom TGGCACTACTGAAATGCTag------CgAaAGCTTTGAgaAAAGTGCCAacaG--AcaAt
SARS_coronavirus_civet007 TGGCACTACTGAgATGCTCT------CAAGAGCTTTGAAGAAAGTGCCAGTtG--ATGAG
SARS_coronavirus_GZ50 TGGCACTACTGAgATGCTCT------CAAGAGCTTTGAAGAAAGTGCCAGTtG--ATGAG
SARS_coronavirus_Taiwan_TC1 TGGCACTACTGAgATGCTCT------CAAGAGCTTTGAAGAAAGTGCCAGTtG--ATGAG
Bat_coronavirus_(BtCoV/273/2005) TGGtACTACaGAAATGCTtg------CAAagGCaTTaAAGAAAGTGCCAGTGt--gTGAG
BtRf-BetaCoV/HeB2013 TGGtACTACaGAAATGCTtg------CAAagGCaTTaAAGAAAGTGCCAGTGt--gTGAG
SARS_CORONAVIRUS TAcggcgccgatcTAaAgtCAttTgaCtTaGgCgAcGAgcttgGcaCTGaTccttatgaA
Severe_acute_respiratory_syndrom TA-----------TATAACCACtTACCCgGGtCAgGGt----TtaaaTGGTT-------A
SARS_coronavirus_civet007 TA-----------TATAACCACGTACCCTGGACAAGGA----TGTGCTGGTT-------A
SARS_coronavirus_GZ50 TA-----------TATAACCACGTACCCTGGACAAGGA----TGTGCTGGTT-------A
SARS_coronavirus_Taiwan_TC1 TA-----------TATAACCACGTACCCTGGACAAGGA----TGTGCTGGTT-------A
Bat_coronavirus_(BtCoV/273/2005) TA-----------TATAACtACaTAtCCcGGACAAGGA----TGTGCTGGTT-------A
BtRf-BetaCoV/HeB2013 TA-----------TATAACtACaTAtCCcGGACAAGGA----TGTGCTGGTT-------A
SARS_CORONAVIRUS gAtttTCaAGaAAaCTggaACactaaacatagcagtggtgttacccgtgaactcatgcgT
Severe_acute_respiratory_syndrom cACtgTaGAGGAgGCaAAGAC--------------------------------------a
SARS_coronavirus_civet007 TACACTtGAGGAAGCTAAGAC--------------------------------------T
SARS_coronavirus_GZ50 TACACTtGAGGAAGCTAAGAC--------------------------------------T
SARS_coronavirus_Taiwan_TC1 TACACTtGAGGAAGCTAAGAC--------------------------------------T
Bat_coronavirus_(BtCoV/273/2005) TACACTCGAaGAAGCaAAGAC--------------------------------------T
BtRf-BetaCoV/HeB2013 TACACTCGAaGAAGCaAAGAC--------------------------------------T
SARS_CORONAVIRUS GaGCTTAAcggAgGggcATacaCtcgcTATGtcgaTAacAaCTTCtGtgGC-CCTgATGg
Severe_acute_respiratory_syndrom GtGCTTAAAAAgTGtAAAagTGCcTTTTAca----TtCTACCaTCtattatctCTAATG-
SARS_coronavirus_civet007 GCtCTTAAgAAATGCAAATCTGCATTTTATG----TACTACCTTCAGAAGCACCTAATG-
SARS_coronavirus_GZ50 GCtCTTAAgAAATGCAAATCTGCATTTTATG----TACTACCTTCAGAAGCACCTAATG-
SARS_coronavirus_Taiwan_TC1 GCtCTTAAgAAATGCAAATCTGCATTTTATG----TACTACCTTCAGAAGCACCTAATG-
Bat_coronavirus_(BtCoV/273/2005) GCGCTTAAAAggTGCAAATCTGCATgcTATG----TAtTACCTTCAaAAaCACCTAATG-
BtRf-BetaCoV/HeB2013 GCGCTTAAAAggTGCAAATCTGCATTcTATG----TAtTACCTTCAaAAaCACCTAATG-
SARS_CORONAVIRUS ctaccctctTgAGtgcattaAAGAccTTCTAGcacgtgctggtaaagcttcatGcACTtT
Severe_acute_respiratory_syndrom --------agAAG------cAAGAAATTCTtG---------------------GAACTGT
SARS_coronavirus_civet007 --------CTAAG------GAAGAgATTCTAG---------------------GAACTGT
SARS_coronavirus_GZ50 --------CTAAG------GAAGAgATTCTAG---------------------GAACTGT
SARS_coronavirus_Taiwan_TC1 --------CTAAG------GAAGAgATTCTAG---------------------GAACTGT
Bat_coronavirus_(BtCoV/273/2005) --------taAAa------GAtGAAATcCTtG---------------------GAACgGT
BtRf-BetaCoV/HeB2013 --------taAAa------GAtGAAATcCTtG---------------------GAACgGT
SARS_CORONAVIRUS gTCcgaacaaCTGGAcTTtattgacacTaAGAGgggTGtaTaCTgcTGCcGtgaAcAtgA
Severe_acute_respiratory_syndrom tTC-------tTGGAATT---------TGcGAGAAATGCTTGCaCATGCaGAAGAaACAc
SARS_coronavirus_civet007 ATC-------CTGGAATT---------TGAGAGAAATGCTTGCTCATGCTGAAGAGACAA
SARS_coronavirus_GZ50 ATC-------CTGGAATT---------TGAGAGAAATGCTTGCTCATGCTGAAGAGACAA
SARS_coronavirus_Taiwan_TC1 ATC-------CTGGAATT---------TGAGAGAAATGCTTGCTCATGCTGAAGAGACAA
Bat_coronavirus_(BtCoV/273/2005) gTC-------tTGGAATT---------TaAGgGAAATGCTTGCTCATGCTGAAGAGACAA
BtRf-BetaCoV/HeB2013 gTC-------CTGGAATT---------TaAGgGAAATGCTTGCTCATGCTGAAGAGACAA
SARS_CORONAVIRUS GcAtgaaAtTGCtTg-gTaCAcGGaACGTTctgaaaAGAGCtATgAATtGCAgaCAcCtt
Severe_acute_respiratory_syndrom GcAAATTAATGCCTgTcTGtgTGG-AaacT------AaAGCCAT-AgTttCAACtATaCA
SARS_coronavirus_civet007 GAAAATTAATGCCTATATGCATGG-AtGTT------AGAGCCAT-AATGGCAACCATCCA
SARS_coronavirus_GZ50 GAAAATTAATGCCTATATGCATGG-AtGTT------AGAGCCAT-AATGGCAACCATCCA
SARS_coronavirus_Taiwan_TC1 GAAAATTAATGCCTATATGCATGG-AtGTT------AGAGCCAT-AATGGCAACCATCCA
Bat_coronavirus_(BtCoV/273/2005) GAAAATTAATGCCTATtTGCATGG-ACaTT------AGAGCCAT-AATGGCtACaATCCA
BtRf-BetaCoV/HeB2013 GAAAATTAATGCCTATtTGCATGG-ACaTT------AGAGCCAT-AATGGCtACaATCCA
SARS_CORONAVIRUS ttGaAAtTAaattggcAAAGaAATTtgAcatcTTCAAtgGGGAATgtccaAaTtTtGTaT
Severe_acute_respiratory_syndrom gCGTAAaTA------TAAgGGtATTAAA---ATaCAAGAGGGtgTgGTTGAtTATGGTGc
SARS_coronavirus_civet007 ACGTAAGTA------TAAAGGAATTAAA---ATTCAAGAGGGcATCGTTGACTATGGTGT
SARS_coronavirus_GZ50 ACGTAAGTA------TAAAGGAATTAAA---ATTCAAGAGGGcATCGTTGACTATGGTGT
SARS_coronavirus_Taiwan_TC1 ACGTAAGTA------TAAAGGAATTAAA---ATTCAAGAGGGcATCGTTGACTATGGTGT
Bat_coronavirus_(BtCoV/273/2005) ACGTAAGTA------TAAAGGtATTAAg---ATTCAAGAaGGAATCGTTGACTATGGTGT
BtRf-BetaCoV/HeB2013 ACGTAAGTA------TAAAGGtATTAAA---ATTCAAGAaGGAATCGTTGACTATGGTGT
SARS_CORONAVIRUS TtcccTtaaaTTccATAaTcaagactattcaaccaagggttgaaAagAAAaAGCtTGatG
Severe_acute_respiratory_syndrom TaGATTtTaCTTTTAcACc-------------------------AGTAAAacaaCTGTAG
SARS_coronavirus_civet007 cCGATTCTTCTTTTATACT-------------------------AGTAAAGAGCCTGTAG
SARS_coronavirus_GZ50 cCGATTCTTCTTTTATACT-------------------------AGTAAAGAGCCTGTAG
SARS_coronavirus_Taiwan_TC1 cCGATTCTTCTTTTATACT-------------------------AGTAAAGAGCCTGTAG
Bat_coronavirus_(BtCoV/273/2005) TCGgTTCTTtTTcTATACT-------------------------AGcAAAGAGCCTGTAG
BtRf-BetaCoV/HeB2013 TCGgTTCTTtTTcTATACT-------------------------AGcAAAGAaCCTGTAG
SARS_CORONAVIRUS gcTtTATgggTA-GAAttcGAtCTgTCTA--------tCcaGTtgCgtcaCCAAaTGa--
Severe_acute_respiratory_syndrom CgTCacTTATcAacAcaCTtAACgaTCTAAATGAAaCtCTTGTtACAATGCCAcTTGGcT
SARS_coronavirus_civet007 CTTCTATTATTACGAAGCTGAACTCTCTAAATGAgCCGCTTGTCACAATGCCAATTGGTT
SARS_coronavirus_GZ50 CTTCTATTATTACGAAGCTGAACTCTCTAAATGAgCCGCTTGTCACAATGCCAATTGGTT
SARS_coronavirus_Taiwan_TC1 CTTCTATTATTACGAAGCTGAACTCTCTAAATGAgCCGCTTGTCACAATGCCAATTGGTT
Bat_coronavirus_(BtCoV/273/2005) CTTCTATTATTACaAAaCTcAAtTCTtTAAATGAACCaCTTaTCACAATGCCgATaGGTT
BtRf-BetaCoV/HeB2013 CTTCTATTATTACaAAGCTcAAtTCTtTAAATGAACCaCTTaTCACAATGCCgATaGGTT
SARS_CORONAVIRUS ATGcaACcaaAtgTGccTTTcAaCTctcatgaagtgtgatcattgTGgtGAAaCTtCatG
Severe_acute_respiratory_syndrom ATGTaAC---ACATGGcTTaAATtT--------------------gGAAGAAGCTGCtCG
SARS_coronavirus_civet007 ATGTGAC---ACATGGTTTTAATCT--------------------TGAAGAgGCTGCGCG
SARS_coronavirus_GZ50 ATGTGAC---ACATGGTTTTAATCT--------------------TGAAGAgGCTGCGCG
SARS_coronavirus_Taiwan_TC1 ATGTGAC---ACATGGTTTTAATCT--------------------TGAAGAgGCTGCGCG
Bat_coronavirus_(BtCoV/273/2005) ATGTGAC---ACATGGTTTTAAcCT--------------------gGAAGAAGCTGCGCG
BtRf-BetaCoV/HeB2013 ATGTGAC---ACATGGTTTTAAcCT--------------------gGAAGAAGCTGCGCG
SARS_CORONAVIRUS gcagAcGgGcgaTTtTgTTAAAGCcaCTtgCGaAttttgtggcactgagaatttgactaa
Severe_acute_respiratory_syndrom gTaTATGaG---aTCTCTcAAAGtgCCaGCtacA--------------------------
SARS_coronavirus_civet007 CTGTATGCG---TTCTCTTAAAGCTCCTGCCGTA--------------------------
SARS_coronavirus_GZ50 CTGTATGCG---TTCTCTTAAAGCTCCTGCCGTA--------------------------
SARS_coronavirus_Taiwan_TC1 CTGTATGCG---TTCTCTTAAAGCTCCTGCCGTA--------------------------
Bat_coronavirus_(BtCoV/273/2005) tTGTATGCG---cTCTCTTAAAGCTCCTGCtGTA--------------------------
BtRf-BetaCoV/HeB2013 tTGTATGCG---cTCTCTTAAAGCTCCTGCtGTA--------------------------
SARS_CORONAVIRUS agaagGTGcCAcTActtgtggttacTtAcCcCaAaATGCTGTTgtTaAaATtTAtTGttT
Severe_acute_respiratory_syndrom -----GTtTCtGTt-----------TCtTCACCtGATGCTGTTACa-gCgTATAATGGtT
SARS_coronavirus_civet007 -----GTGTCAGTA-----------TCATCACCAGATGCTGTTACT-ACATATAATGGAT
SARS_coronavirus_GZ50 -----GTGTCAGTA-----------TCATCACCAGATGCTGTTACT-ACATATAATGGAT
SARS_coronavirus_Taiwan_TC1 -----GTGTCAGTA-----------TCATCACCAGATGCTGTTACT-ACATATAATGGAT
Bat_coronavirus_(BtCoV/273/2005) -----GTGTCAGTg-----------TCtTCACCAGAcGCaGTTACT-ACATAcAATGGAT
BtRf-BetaCoV/HeB2013 -----GTtTCAGTg-----------TCtTCACCAGAcGCaGTTACT-ACATAcAATGGAT
SARS_CORONAVIRUS AgaTttCcTaAT-ATtAcAaACtTgTGc----CctTTTGgtGAAgtttTTaaCgccaCca
Severe_acute_respiratory_syndrom AtCTtACTTCtTCtTCtAAaACAcCTGAaGAACAtTTTaTtGAAACcATcTCaCTtGCTG
SARS_coronavirus_civet007 ACCTCACTTCgTCATCAAAGACATCTGAGGAgCACTTTGTAGAAACAgTTTCttTgGCTG
SARS_coronavirus_GZ50 ACCTCACTTCgTCATCAAAGACATCTGAGGAgCACTTTGTAGAAACAgTTTCttTgGCTG
SARS_coronavirus_Taiwan_TC1 ACCTCACTTCgTCATCAAAGACATCTGAGGAgCACTTTGTAGAAACAgTTTCttTgGCTG
Bat_coronavirus_(BtCoV/273/2005) ACCTCACaTCATCtTCAAAGACAcCTGAGGAACACTTcaTAGAgACcATcTCCCTtGCgG
BtRf-BetaCoV/HeB2013 ACCTCACaTCATCtTCAAAGACAcCTGAGGAACACTTcaTAGAgACcATcTCCCTtGCgG
SARS_CORONAVIRUS GaTtT----GcatcTGtTtaTgcTtgGaACAG-GaAgAGAATcAGcaactGTGTTGctgA
Severe_acute_respiratory_syndrom GtTCcTAtAaAGATTGGTCCTATTCtGGACAatcTACAcAAcTAG-----GTaTaG--AA
SARS_coronavirus_civet007 GCTCTTACAGAGATTGGTCCTATTCAGGACAGCGTACAGAgTTAG-----GTGTTG--AA
SARS_coronavirus_GZ50 GCTCTTACAGAGATTGGTCCTATTCAGGACAGCGTACAGAgTTAG-----GTGTTG--AA
SARS_coronavirus_Taiwan_TC1 GCTCTTACAGAGATTGGTCCTATTCAGGACAGCGTACAGAgTTAG-----GTGTTG--AA
Bat_coronavirus_(BtCoV/273/2005) GtaCgTAtAGAGAcTGGTCtTAcTCtGGACAaCGTACgGAATTAG-----GTGTTG--AA
BtRf-BetaCoV/HeB2013 GtaCgTAtAGAGAcTGGTCtTAcTCtGGACAaCGTACAGAATTAG-----GTGTTG--AA
SARS_CORONAVIRUS TTatTctgtCcT----ATAtAATTccGcAtCAttttcCACTtTtaAGtGttatGgaGtGT
Severe_acute_respiratory_syndrom TTTCTTAAGaGaGGTGATAAAAgTGTaTAttA-----CACT---agtAatCCtacCacaT
SARS_coronavirus_civet007 TTTCTTAAGCGTGGTGAcAAAATTGTGTACCA-----CACTCTGGAGAGCCCCGTCGAGT
SARS_coronavirus_GZ50 TTTCTTAAGCGTGGTGAcAAAATTGTGTACCA-----CACTCTGGAGAGCCCCGTCGAGT
SARS_coronavirus_Taiwan_TC1 TTTCTTAAGCGTGGTGAcAAAATTGTGTACCA-----CACTCTGGAGAGCCCCGTCGAGT
Bat_coronavirus_(BtCoV/273/2005) TTTCTcAAGCGTGGaGATAAgATTGTcTACCA-----CACTaTtGAaAaaCCCacCGAGT
BtRf-BetaCoV/HeB2013 TTTCTcAAGCGTGGaGATAAgATTGTcTACCA-----CACTaTtGAaAaaCCCaTCGAaT
SARS_CORONAVIRUS cTCcTacTaAattaaAtGaTCTCT-gCTTtACtAAtgtctaTgcAGAtTCaTTTgTaatT
Severe_acute_respiratory_syndrom TcCAcCTaGAtGGTGAaGTTaTCaCctTTGACAAtC-----TtAAGAcaCTTcTtTCttT
SARS_coronavirus_civet007 TTCATCTTGACGGTGAGGTTCTtTCACTTGACAAAC-----TAAAGAGTCTcTTATCCCT
SARS_coronavirus_GZ50 TTCATCTTGACGGTGAGGTTCTtTCACTTGACAAAC-----TAAAGAGTCTcTTATCCCT
SARS_coronavirus_Taiwan_TC1 TTCATCTTGACGGTGAGGTTCTtTCACTTGACAAAC-----TAAAGAGTCTcTTATCCCT
Bat_coronavirus_(BtCoV/273/2005) TctATCTTGACGGTGAGGTTCTCcCACTTGACAAgC-----TcAAGAGTCTTTTgTCtCT
BtRf-BetaCoV/HeB2013 TTCATCTTGACGGTGAGGTTCTCcCACTTGACAAgC-----TcAAGAGTCTTTTgTCtCT
SARS_CORONAVIRUS agaGGtGaTgAAGtCagacAAAtcGcTCcagggcaAACTGgAaAgAttgCTgATtataAt
Severe_acute_respiratory_syndrom GaGaGAaGTgAgGACTATtAAgGTGTTt-----ACAACaGTAGACAACAtTAAcCTCCAC
SARS_coronavirus_civet007 GCGGGAGGTTAAGACTATAAAAGTGTTC-----ACAACTGTgGACAACACTAATCTCCAC
SARS_coronavirus_GZ50 GCGGGAGGTTAAGACTATAAAAGTGTTC-----ACAACTGTgGACAACACTAATCTCCAC
SARS_coronavirus_Taiwan_TC1 GCGGGAGGTTAAGACTATAAAAGTGTTC-----ACAACTGTgGACAACACTAATCTCCAC
Bat_coronavirus_(BtCoV/273/2005) tCGtGAGGTTAAGACTATtAAAGTGTTt-----ACtACTGTAGACAAtACTAAcCTCCAC
BtRf-BetaCoV/HeB2013 tCGtGAGGTTAAGACTATtAAAGTGTTt-----ACtACTGTAGACAAtACTAAcCTCCAC
SARS_CORONAVIRUS tataAAtTaccaGATgatTtTAcaggcTgcG--ttatAGcTTGGaatTCtAACAatCTTg
Severe_acute_respiratory_syndrom ACgCAAgTTGTGGAcATGTCaATGACATATGGACAaCAGTTTGG---TCCAACtTAtTT-
SARS_coronavirus_civet007 ACACAgCTTGTGGATATGTCTATGACATATGGACAGCAGTTTGG---TCCAACATACTT-
SARS_coronavirus_GZ50 ACACAgCTTGTGGATATGTCTATGACATATGGACAGCAGTTTGG---TCCAACATACTT-
SARS_coronavirus_Taiwan_TC1 ACACAgCTTGTGGATATGTCTATGACATATGGACAGCAGTTTGG---TCCAACATACTT-
Bat_coronavirus_(BtCoV/273/2005) ACACAACTTGTGGAcATGTCTATGACATATGGACAGCAcTTTGG---TCCAACcTAtTT-
BtRf-BetaCoV/HeB2013 ACACAACTTGTGGAcATGTCTgTGACATATGGACAGCAtTTcGG---TCCAACcTAtTT-
SARS_CORONAVIRUS attctaaGGtTGGTGgTaAttataattacctgtatagatTGTTtaggAAgTctAAtCTCA
Severe_acute_respiratory_syndrom -------GGATGGaGCTGA--------------------TGTTACtAAAATaAAACCTCA
SARS_coronavirus_civet007 -------GGATGGTGCTGA--------------------TGTTACAAAAATTAAACCTCA
SARS_coronavirus_GZ50 -------GGATGGTGCTGA--------------------TGTTACAAAAATTAAACCTCA
SARS_coronavirus_Taiwan_TC1 -------GGATGGTGCTGA--------------------TGTTACAAAAATTAAACCTCA
Bat_coronavirus_(BtCoV/273/2005) -------GGAcGGTGCTGA--------------------TGTcACcAAggTTAAgCCTCA
BtRf-BetaCoV/HeB2013 -------GGAcGGTGCTGA--------------------TGTcACtAAggTTAAgCCTCA
SARS_CORONAVIRUS --aAccTttTGAGaGagAtAtTTcaacTGaAatCTAtCagGccGgTagCACACcttGTAa
Severe_acute_respiratory_syndrom TaattcaCATGAaGGTAAaACaTTtTaTGTt--tTACCTAa-TGATGACACtCTACGTgt
SARS_coronavirus_civet007 TGTAAATCATGAGGGTAAGACTTTCTTTGTA--CTACCTAG-TGATGACACACTACGTAG
SARS_coronavirus_GZ50 TGTAAATCATGAGGGTAAGACTTTCTTTGTA--CTACCTAG-TGATGACACACTACGTAG
SARS_coronavirus_Taiwan_TC1 TGTAAATCATGAGGGTAAGACTTTCTTTGTA--CTACCTAG-TGATGACACACTACGTAG
Bat_coronavirus_(BtCoV/273/2005) TGTtAATCATGAGGGTAAGACcTTCTTTGTA--CTACCTAG-TGATGACACACTgCGTAG
BtRf-BetaCoV/HeB2013 TGTtAATCATGAGGGTAAGACTTTCTTTGTA--CTACCTAG-TGATGACACACTgCGTAG
SARS_CORONAVIRUS tggtgtTGAAGgTTTTaAtTgtTACttTcCTtTacaATcAtAtgGTTTcCaacccacTaa
Severe_acute_respiratory_syndrom ------TGAgGCTTTTGAGTACTACCAcACaac-TGATcctA--GTTTTC------TgGG
SARS_coronavirus_civet007 ------TGAAGCTTTcGAGTACTACCATACTCT-TGATGAGA--GTTTTC------TTGG
SARS_coronavirus_GZ50 ------TGAAGCTTTcGAGTACTACCATACTCT-TGATGAGA--GTTTTC------TTGG
SARS_coronavirus_Taiwan_TC1 ------TGAAGCTTTcGAGTACTACCATACTCT-TGATGAGA--GTTTTC------TTGG
Bat_coronavirus_(BtCoV/273/2005) ------TGAAGCaTTTGAaTAtTACCAcACTCT-cGAcGAGA--GTTTTC------TTGG
BtRf-BetaCoV/HeB2013 ------TGAAGCaTTTGAaTAtTACCAcACTCT-cGAcGAGA--GTTTTC------TcGG
SARS_CORONAVIRUS TgG-----TGTtgGtTaccAACCAtACAgAGtAgTaGtAcTTTCtTttgaacttctacat
Severe_acute_respiratory_syndrom TAGGTACATGTCaGCaTTAAAtCACACtAAaAAgTGGAAATacCCa--------------
SARS_coronavirus_civet007 TAGGTACATGTCTGCgTTAAACCACACAAAGAAATGGAAATTTCCT--------------
SARS_coronavirus_GZ50 TAGGTACATGTCTGCTTTAAACCACACAAAGAAATGGAAATTTCCT--------------
SARS_coronavirus_Taiwan_TC1 TAGGTACATGTCTGCTTTAAACCACACAAAGAAATGGAAATTTCCT--------------
Bat_coronavirus_(BtCoV/273/2005) TAGaTACATGTCTGCTTTgAAtCACACAAAGAAATGGAAATTTCCT--------------
BtRf-BetaCoV/HeB2013 TAGaTAtATGTCTGCTTTgAgtCACACAAAGAAATGGAAATTTCCT--------------
SARS_CORONAVIRUS gcaccagCAActGTTtGTGGaccTaaAAagTCtAcTAAtTtGGtTaAaAACAAaTG----
Severe_acute_respiratory_syndrom -------CAA--GTTaaTGG---TTTAACTTCtATTAAATGGGCaGATAACAACTGTTAT
SARS_coronavirus_civet007 -------CAA--GTTGGTGG---TTTAACTTCAATTAAATGGGCTGATAACAAtTGTTAT
SARS_coronavirus_GZ50 -------CAA--GTTGGTGG---TTTAACTTCAATTAAATGGGCTGATAACAAtTGTTAT
SARS_coronavirus_Taiwan_TC1 -------CAA--GTTGGTGG---TTTAACTTCAATTAAATGGGCTGATAACAAtTGTTAT
Bat_coronavirus_(BtCoV/273/2005) -------CAA--GTTGGTGG---TTTAACTTCAATcAAATGGGCTGAcAAtAACTGTTAT
BtRf-BetaCoV/HeB2013 -------CAA--GTTGGTGG---TTTAACTTCAATcAAATGGGCTGAcAAtAACTGTTAT
SARS_CORONAVIRUS -TGTCaA---TTTcA-----ACTTCAAtgGtTTaAcaggcacaggtgttcttactgAGTC
Severe_acute_respiratory_syndrom cTtgCCAcTGcaTTgTTAaCACTcCAACAaATaGA---------------------gtTg
SARS_coronavirus_civet007 TTGTCtAGTGTTTTATTAGCACTTCAACAGATTGA---------------------AGTC
SARS_coronavirus_GZ50 TTGTCtAGTGTTTTATTAGCACTTCAACAGcTTGA---------------------AGTC
SARS_coronavirus_Taiwan_TC1 TTGTCtAGTGTTTTATTAGCACTTCAACAGcTTGA---------------------AGTC
Bat_coronavirus_(BtCoV/273/2005) TTGTCCAGTGTTTTATTAGCACTTCAgCAGATTGA---------------------gGTg
BtRf-BetaCoV/HeB2013 TTGTCCAGTGTTTTATTAGCACTTCAgCAGATTGA---------------------gGTg
SARS_CORONAVIRUS tAAcaaAAaGtttCtGCctTTCcAacaatTTg--gcAGAGaCatTGCTGacacTaCTGaT
Severe_acute_respiratory_syndrom AAgTTtAATcCACCtGCtCTaCAAGAtGCTTATTAcAGAGCaaGgGCTGGTGAaGCTGCT
SARS_coronavirus_civet007 AAATTCAATGCACCAGCACTTCAAGAGGCTTATTATAGAGCCCGTGCTGGTGATGCTGCT
SARS_coronavirus_GZ50 AAATTCAATGCACCAGCACTTCAAGAGGCTTATTATAGAGCCCGTGCTGGTGATGCTGCT
SARS_coronavirus_Taiwan_TC1 AAATTCAATGCACCAGCACTTCAAGAGGCTTATTATAGAGCCCGTGCTGGTGATGCTGCT
Bat_coronavirus_(BtCoV/273/2005) AAgTTtAATGCACCcGCACTaCAAGAGGCcTATTATAGAGCtCGTGCTGGTGATGCTGCT
BtRf-BetaCoV/HeB2013 AAgTTtAATGCACCcGCACTaCAAGAaGCcTATTATAGAGCtCGTGCTGGTGATGCTGCT
SARS_CORONAVIRUS gctgTccGTGatcCACagAcACTtgaGaTTcttGacATtAcACcaT--GTtctTTTGGTG
Severe_acute_respiratory_syndrom AACTTTTGTG---CACTtATctTa--GCcTACtGTAATAAgACaGTaGGTGAGTTaGGTG
SARS_coronavirus_civet007 AACTTTTGTG---CACTCATACTC--GCTTACAGTAATAAAACTGTTGGcGAGcTTGGTG
SARS_coronavirus_GZ50 AACTTTTGTG---CACTCATACTC--GCTTACAGTAATAAAACTGTTGGcGAGcTTGGTG
SARS_coronavirus_Taiwan_TC1 AACTTTTGTG---CACTCATACTC--GCTTACAGTAATAAAACTGTTGGcGAGcTTGGTG
Bat_coronavirus_(BtCoV/273/2005) AAtTTTTGTG---CgCTCATACTC--GCTTACAGTAATAAAACTGTgGGTGAGTTgGGTG
BtRf-BetaCoV/HeB2013 AAtTTTTGTG---CgCTCATACTt--GCTTACAGTAATAAAACTGTgGGTGAGTTgGGTG
SARS_CORONAVIRUS gTGTCAGtgttataacaccaggaacAaAtACTtctAaCCAggttgctgtTCTTtatCAGg
Severe_acute_respiratory_syndrom ATGTtAG------------------AGAAACaATGAgttA---------ctTgtTtCAaC
SARS_coronavirus_civet007 ATGTCAG------------------AGAAACTATGACCCA---------TCTTCTACAGC
SARS_coronavirus_GZ50 ATGTCAG------------------AGAAACTATGACCCA---------TCTTCTACAGC
SARS_coronavirus_Taiwan_TC1 ATGTCAG------------------AGAAACTATGACCCA---------TCTTCTACAGC
Bat_coronavirus_(BtCoV/273/2005) ATGTtAG------------------gGAAACTATGACCCA---------TCTTCTACAaC
BtRf-BetaCoV/HeB2013 ATGTtAG------------------gGAAACTATGACCCA---------TCTTCTACAaC
SARS_CORONAVIRUS gTGtTAA--------CTGCAcAG-aAGTcCcTgtTGc------TAttCATgcaGaTCAac
Severe_acute_respiratory_syndrom ATGCcAATTTaGAtTCTtgcAAaAGAGTctTgAAcGTGGTGTGTAAAacTTGTGGaCAac
SARS_coronavirus_civet007 ATGCTAATTTGGAATCTGCAAAGcGAGTTCTTAATGTGGTGTGTAAACATTGTGGTCAGA
SARS_coronavirus_GZ50 ATGCTAATTTGGAATCTGCAAAGcGAGTTCTTAATGTGGTGTGTAAACATTGTGGTCAGA
SARS_coronavirus_Taiwan_TC1 ATGCTAATTTGGAATCTGCAAAGcGAGTTCTTAATGTGGTGTGTAAACATTGTGGTCAGA
Bat_coronavirus_(BtCoV/273/2005) ATGCcAAcTTGGAATCcGCtAAGAGgGTTCTTAATtTGGTGTGTAAgCATTGcGGaCAGA
BtRf-BetaCoV/HeB2013 ATGCcAAcTTGGAATtcGCtAAGAGgGTTCTTAATtTGGTGTGTAAgCATTGcGGaCAGA
SARS_CORONAVIRUS ttACTcCTA-CTTggCGtGTtTAttctacAgGtTcTaATGTttttcaaAcAcGtGcAggC
Severe_acute_respiratory_syndrom AgcagACaACCcTtAaGGGTGTAG-----AAGCTGTtATGT-------AcATGGGcACaC
SARS_coronavirus_civet007 AAACTACTACCTTAACGGGTGTAG-----AAGCTGTGATGT-------ATATGGGTACTC
SARS_coronavirus_GZ50 AAACTACTACCTTAACGGGTGTAG-----AAGCTGTGATGT-------ATATGGGTACTC
SARS_coronavirus_Taiwan_TC1 AAACTACTACCTTAACGGGTGTAG-----AAGCTGTGATGT-------ATATGGGTACTC
Bat_coronavirus_(BtCoV/273/2005) AAACTACcACCTTAAtGGGTGTAG-----AAGCcGTGATGT-------ATATGGGTACTt
BtRf-BetaCoV/HeB2013 AAACTACcACCTTAACGGGTGTAG-----AAGCcGTGATGT-------AcATGGGTACTt
SARS_CORONAVIRUS TgTtTaAT-AgggGCTgAAcA----TGTcaaCAactCATaTGaGTGTGac----------
Severe_acute_respiratory_syndrom TtTCTTATGAacAatTTAAGAaAGGTGTTcagATaCCtTGTacGTGTGGTaaacAaGCTA
SARS_coronavirus_civet007 TATCTTATGATAAtCTTAAGACAGGTGTTTCCATTCCATGTGTGTGTGGTCGTGATGCTA
SARS_coronavirus_GZ50 TATCTTATGATAAtCTTAAGACAGGTGTTTCCATTCCATGTGTGTGTGGTCGTGATGCTA
SARS_coronavirus_Taiwan_TC1 TATCTTATGATAAtCTTAAGACAGGTGTTTCCATTCCATGTGTGTGTGGTCGTGATGCTA
Bat_coronavirus_(BtCoV/273/2005) TgTCTTATGATgAGCTTAAGgCAGGTGTTTCaATTCCtTGTGTGTGTGGTCGTGATGCTA
BtRf-BetaCoV/HeB2013 TgTCTTATGATgAGCTTAAGACAGGTGTTTCaATTCCtTGTGTGTGTGGTCGTGgTGCTA
SARS_CORONAVIRUS ----ATAcCcAtTggtgCAgGtaTaTgCgcTaGTTATcAgactcagACtAattctcCtcG
Severe_acute_respiratory_syndrom CAaAATATCTAGTACAACAgGAGTCacCTTTTGTTATGATGTCaGCACCA------CCTG
SARS_coronavirus_civet007 CACAATATCTAGTACAACAAGAGTCTTCTTTTGTTATGATGTCTGCACCA------CCTG
SARS_coronavirus_GZ50 CACAATATCTAGTACAACAAGAGTCTTCTTTTGTTATGATGTCTGCACCA------CCTG
SARS_coronavirus_Taiwan_TC1 CACAATATCTAGTACAACAAGAGTCTTCTTTTGTTATGATGTCTGCACCA------CCTG
Bat_coronavirus_(BtCoV/273/2005) CACAATATCTAGTACAACAAGAGTCTTCTTTTGTTATGATGTCTGCACCt------CCTG
BtRf-BetaCoV/HeB2013 CACAATATCTAGTACAACAAGAGTCTTCTTTTGTTATGATGTCTGCACCt------CCTG
SARS_CORONAVIRUS gcGgGcAcgtAgTgtAGCtAGtcA-------ATccatcAtTGccTACACTa-----TgTC
Severe_acute_respiratory_syndrom CTcAGTATgAAcTtaAGCAtGGTACATTtactTGTGCtAgTGAGTACACTGGTAAtTAcC
SARS_coronavirus_civet007 CTGAGTATAAATTACAGCAAGGTACATTCTTATGTGCgAATGAGTACACTGGTAACTATC
SARS_coronavirus_GZ50 CTGAGTATAAATTACAGCAAGGTACATTCTTATGTGCgAATGAGTACACTGGTAACTATC
SARS_coronavirus_Taiwan_TC1 CTGAGTATAAATTACAGCAAGGTACATTCTTATGTGCgAATGAGTACACTGGTAACTATC
Bat_coronavirus_(BtCoV/273/2005) CTGAGTAcAAgTTgCAGCAgGGTACATTtTTATGcGCtAATGAGTACACTGGTAAtTATC
BtRf-BetaCoV/HeB2013 CTGAGTAcAAgTTgCAGCAgGGTACATTtTTATGcGCtAATGAGTACACTGGTAAtTATC
SARS_CORONAVIRUS AcTtgGtgCAgaAaAtTCAgtTgctTaCTctaatAACtCTatTgcCaTAcccACaaAttT
Severe_acute_respiratory_syndrom AGTGTGGTCAcTAtAaaCATATAACTtCTAAaGAAACttT-gTATtGcATAGACGGtGCT
SARS_coronavirus_civet007 AGTGTGGTCATTACACTCATATAACTGCTAAGGAgACCCT-CTATCGTATtGACGGAGCT
SARS_coronavirus_GZ50 AGTGTGGTCATTACACTCATATAACTGCTAAGGAgACCCT-CTATCGTATtGACGGAGCT
SARS_coronavirus_Taiwan_TC1 AGTGTGGTCATTACACTCATATAACTGCTAAGGAgACCCT-CTATCGTATtGACGGAGCT
Bat_coronavirus_(BtCoV/273/2005) AGTGTGGTCATTACACTCAcATAACTGCcAAGGAAACgCT-CTATCGTATAGAtGGAGCT
BtRf-BetaCoV/HeB2013 AGTGTGGTCATTAtACTCATATAACTGCcAAGGAAACgCT-CTATCGTATAGAtGGAGCT
SARS_CORONAVIRUS tACtaTtagtgttaccACAgAaATtctAccAGTgtctAtGACCaAGacAtcagTagaTTg
Severe_acute_respiratory_syndrom ttaCTT----------ACAAAGtccTCA-GAaTACAAAGGtCC-taTtACgGATGTTTTC
SARS_coronavirus_civet007 CACCTT----------ACAAAGATGTCA-GAGTACAAAGGACC-AGTGACTGATGTTTTC
SARS_coronavirus_GZ50 CACCTT----------ACAAAGATGTCA-GAGTACAAAGGACC-AGTGACTGATGTTTTC
SARS_coronavirus_Taiwan_TC1 CACCTT----------ACAAAGATGTCA-GAGTACAAAGGACC-AGTGACTGATGTTTTC
Bat_coronavirus_(BtCoV/273/2005) CACCTT----------ACAAAaATGTCA-GAaTAtAAAGGACC-AGTGACTGATGTTTTC
BtRf-BetaCoV/HeB2013 CACCTT----------ACAAAaATGTCA-GAaTAtAAAGGACC-AGTGACTGATGTTTTC
SARS_CORONAVIRUS TACAAtG-tACATttgtggtgaTTcaACTgaAtgCAgCAAtCtTtTGTtGcA------at
Severe_acute_respiratory_syndrom TACAAAGAAAacag--------TTACACaACAACCATaAAaCCaGTtaCtTATAAAtTgG
SARS_coronavirus_civet007 TACAAgGAAACATC--------cTACACTACAACCATCAAGCCTGTGTCGTATAAACTCG
SARS_coronavirus_GZ50 TACAAgGAAACATC--------TTACACTACAACCATCAAGCCTGTGTCGTATAAACTCG
SARS_coronavirus_Taiwan_TC1 TACAAgGAAACATC--------TTACACTACAACCATCAAGCCTGTGTCGTATAAACTCG
Bat_coronavirus_(BtCoV/273/2005) TAtAAAGAAACATC--------TTACACTACAACtATtAAGCCTGTGTCaTAcAAACTCG
BtRf-BetaCoV/HeB2013 TAtAAAGAAACATC--------TTACACTACAACtATtAAGCCTGTGTCaTATAAACTCG
SARS_CORONAVIRUS ATGGcagTttTTgtACAcA-ATTaAACC------------GTgcTtTAActgGaATAgct
Severe_acute_respiratory_syndrom ATGGtGTTgtTTgtACAGAaATTGAcCCtAAgTTGGAcaatTATTATAAgAAaGAcAATt
SARS_coronavirus_civet007 ATGGAGTTACTTACACAGAGATTGAACCAAAATTGGATGGGTATTATAAAAAGGATAATG
SARS_coronavirus_GZ50 ATGGAGTTACTTACACAGAGATTGAACCAAAATTGGATGGGTATTATAAAAAGGATAATG
SARS_coronavirus_Taiwan_TC1 ATGGAGTTACTTACACAGAGATTGAACCAAAATTGGATGGGTATTATAAAAAGGATAATG
Bat_coronavirus_(BtCoV/273/2005) AcGGAGTTACTTACACAGAGATTGAACCtAAATTaGATGGGTATTATAAAAAGGATAATG
BtRf-BetaCoV/HeB2013 AcGGAGTTACTTACACAGAGATTGAACCtAAATTaGATGGGTATTATAAAAAGGATAATG
SARS_CORONAVIRUS gTTgaACaAgACAaAaacaCCcAagaAgtTTtTgCaCAAgTCaaacaaatttacaAAaCA
Severe_acute_respiratory_syndrom CTT--AtTtCACAGAGCAaCCaATtGAtCTTGTAC-CAAacC-------------AACCA
SARS_coronavirus_civet007 CTT--ACTAtACAGAGCAGCCTATAGACCTTGTAC-CAACTC-------------AACCA
SARS_coronavirus_GZ50 CTT--ACTAtACAGAGCAGCCTATAGACCTTGTAC-CAACTC-------------AACCA
SARS_coronavirus_Taiwan_TC1 CTT--ACTAtACAGAGCAGCCTATAGACCTTGTAC-CAACTC-------------AACCA
Bat_coronavirus_(BtCoV/273/2005) CTT--ACTACACtGAGCAGCCTATtGAtCTTGTgC-CAACTC-------------AACCA
BtRf-BetaCoV/HeB2013 CTT--ACTACACtGAGCAGCCTATtGAtCTTGTgC-CAACTC-------------AACCA
SARS_CORONAVIRUS ccACCAAtTaaagaTTTTGgTggTTTtAAttTttcacaaatattacCAgATccatcAAaA
Severe_acute_respiratory_syndrom TatCCAAAcGCaAGcTTcGATAATTTtAAgtT--------------tgtATGTgaTAAtA
SARS_coronavirus_civet007 TTACCAAATGCGAGTTTTGATAATTTCAAACT--------------CACATGTTCTAACA
SARS_coronavirus_GZ50 TTACCAAATGCGAGTTTTGATAATTTCAAACT--------------CACATGTTCTAACA
SARS_coronavirus_Taiwan_TC1 TTACCAAATGCGAGTTTTGATAATTTCAAACT--------------CACATGTTCTAACA
Bat_coronavirus_(BtCoV/273/2005) TTgCCAAATGCGAGTTTTGAcAATTTCAAACT--------------CACATGcTCTAACA
BtRf-BetaCoV/HeB2013 TTgCCAAATGCGAGTTTTGAcAATTTCAAACT--------------CACATGcTCTAACA
SARS_CORONAVIRUS CcAAgcaagaggtcATTTatTGAaGATcTActtttcAAcaAAgTGACActtgcagatgct
Severe_acute_respiratory_syndrom tcAA----------ATTTGCTGATGATTTA------AAcCAgtTaACt------------
SARS_coronavirus_civet007 CAAA----------ATTTGCTGATGATTTA------AATCAAATGACA------------
SARS_coronavirus_GZ50 CAAA----------ATTTGCTGATGATTTA------AATCAAATGACA------------
SARS_coronavirus_Taiwan_TC1 CAAA----------ATTTGCTGATGATTTA------AATCAAATGACA------------
Bat_coronavirus_(BtCoV/273/2005) ttAA----------gTTTGCTGATGAccTt------AATCAAATGACA------------
BtRf-BetaCoV/HeB2013 ttAA----------gTTTGCTGATGAccTt------AATCAAATGACA------------
SARS_CORONAVIRUS GGCTTCAtcAAaCaAtatggtgattgccttggtgatattGCTgCtaGAGAcCTcATtTGt
Severe_acute_respiratory_syndrom GGtTatAAgAAaCCt------------------------GCTTCAaGAGAGCT-taaaG-
SARS_coronavirus_civet007 GGCTTCAcAAAGCCA------------------------GCTTCACGAGAGCT-ATCTG-
SARS_coronavirus_GZ50 GGCTTCAcAAAGCCA------------------------GCTTCACGAGAGCT-ATCTG-
SARS_coronavirus_Taiwan_TC1 GGCTTCAcAAAGCCA------------------------GCTTCACGAGAGCT-ATCTG-
Bat_coronavirus_(BtCoV/273/2005) GGCTTtAAAAAGCCA------------------------GCTTCACGtGAGCT-ATCTG-
BtRf-BetaCoV/HeB2013 GGCTTtAAAAAGCCA------------------------GCTTCACGtGAGCT-ATCTG-
SARS_CORONAVIRUS gcacaaaagtttaacggccTtACtgTtTTgCCAcctTTGctcacaGATGaAaTGatTgcT
Severe_acute_respiratory_syndrom -------------------TtACATTtTTCCCtGACTTaAATGGtGATGTgGTGGCTATT
SARS_coronavirus_civet007 -------------------TCACATTCTTCCCAGACTTGAATGGCGATGTAGTGGCTATT
SARS_coronavirus_GZ50 -------------------TCACATTCTTCCCAGACTTGAATGGCGATGTAGTGGCTATT
SARS_coronavirus_Taiwan_TC1 -------------------TCACATTCTTCCCAGACTTGAATGGCGATGTAGTGGCTATT
Bat_coronavirus_(BtCoV/273/2005) -------------------TCACATTCTTtCCAGACTTGAATGGCGATGTAGTGGCTATT
BtRf-BetaCoV/HeB2013 -------------------TCACATTCTTtCCAGACTTGAATGGCGATGTAGTGGCTATT
SARS_CORONAVIRUS cAaTAcActtctgCACTgTT-AGCGgGTacaatcacttctggttggaccTTtggtgcAGG
Severe_acute_respiratory_syndrom GAtTATA----aACACTAcaCAcCctcT---------------------TTtAAGAAAGG
SARS_coronavirus_civet007 GACTATA----GACACTATTCAGCGAGT---------------------TTCAAGAAAGG
SARS_coronavirus_GZ50 GACTATA----GACACTATTCAGCGAGT---------------------TTCAAGAAAGG
SARS_coronavirus_Taiwan_TC1 GACTATA----GACACTATTCAGCGAGT---------------------TTCAAGAAAGG
Bat_coronavirus_(BtCoV/273/2005) GACTATA----GACAtTAcTCAGCGAGT---------------------TTCAAGAAAGG
BtRf-BetaCoV/HeB2013 GACTATA----GACAtTAcTCAGCGAGT---------------------TTCAAGAAAGG
SARS_CORONAVIRUS TGCTgcATTA---CAaAtaCCAtTTGcTatGCAaAtggcttataggtTTAAtggtatTgg
Severe_acute_respiratory_syndrom aGCTAAATTgtTACATAAaCCtATTGTTTGGCAtg------------TTAACaAtGCaAC
SARS_coronavirus_civet007 TGCTAAATTACTgCATAAGCCAATTGTTTGGCACA------------TTAACCAGGCTAC
SARS_coronavirus_GZ50 TGCTAAATTACTgCATAAGCCAATTGTTTGGCACA------------TTAACCAGGCTAC
SARS_coronavirus_Taiwan_TC1 TGCTAAATTACTgCATAAGCCAATTGTTTGGCACA------------TTAACCAGGCTAC
Bat_coronavirus_(BtCoV/273/2005) TGCTAAAcTgCTACATAAGCCAATTaTTTGGCAtA------------TcAAtCAGaCTAC
BtRf-BetaCoV/HeB2013 TGCTAAAcTgCTACATAAGCCAATTaTTTGGCAtA------------TcAAtCAGaCTAC
SARS_CORONAVIRUS AgttAcAcAgAAtGTTCtctatgagAACCAAAaAtTgatTGccaaccaatTTaAtagTGc
Severe_acute_respiratory_syndrom tAAtA-AagCcACGTat-------AAACCAAAtACcTGGTG---------TaTACGTTGT
SARS_coronavirus_civet007 AAcCA-AGACAACGTTC-------AAACCAAACACTTGGTG---------TTTACGTTGT
SARS_coronavirus_GZ50 AAcCA-AGACAACGTTC-------AAACCAAACACTTGGTG---------TTTACGTTGT
SARS_coronavirus_Taiwan_TC1 AAcCA-AGACAACGTTC-------AAACCAAACACTTGGTG---------TTTACGTTGT
Bat_coronavirus_(BtCoV/273/2005) AAACA-AGACAACtTaC-------AAgCCAAACAtTTGGTG---------TTTACGTTGT
BtRf-BetaCoV/HeB2013 AAACA-AGACAACtTaC-------AAgCCAAACACTTGGTG---------TTTACGTTGT
SARS_CORONAVIRUS taTTGGca---AAAttCAagActcACTTtcttccacagCAAgTgCAcTTGgAaaaCTtcA
Severe_acute_respiratory_syndrom CTTTGGAGcACAAAaCCAGTtGAAACaT----------CAAATTCgTTTGAtGTaCTGaA
SARS_coronavirus_civet007 CTTTGGAGTACAAAGCCAGTAGAtACTT----------CAAATTCATTTGAAGTTCTGGc
SARS_coronavirus_GZ50 CTTTGGAGTACAAAGCCAGTAGAtACTT----------CAAATTCATTTGAAGTTCTGGc
SARS_coronavirus_Taiwan_TC1 CTTTGGAGTACAAAGCCAGTAGAtACTT----------CAAATTCATTTGAAGTTCTGGc
Bat_coronavirus_(BtCoV/273/2005) CTTTGGAGTACAAAGCCAGTtGAAACcT----------CAAATTCATTTGAAGTTCTGGA
BtRf-BetaCoV/HeB2013 CTTTGGAGTACAAAGCCAGTtGAAACcT----------CAAATTCATTTGAAGTTCTGGA
SARS_CORONAVIRUS AGatGtgGtCAacCAA--AATGcACAAgCTTtaaacacGCTTGTtAA-----ACAACttA
Severe_acute_respiratory_syndrom gtcAGAgGACgCgCAgGGAATGGAtAATCTT-------GCcTGcGAAgaTCtAaAACCAg
SARS_coronavirus_civet007 AGTAGAAGACACACAAGGAATGGACAATCTT-------GCTTGTGAAAGTCAACAACCcA
SARS_coronavirus_GZ50 AGTAGAAGACACACAAGGAATGGACAATCTT-------GCTTGTGAAAGTCAACAACCcA
SARS_coronavirus_Taiwan_TC1 AGTAGAAGACACACAAGGAATGGACAATCTT-------GCTTGTGAAAGTCAACAACCcA
Bat_coronavirus_(BtCoV/273/2005) AGTAGAAGACACACAAGGAATGGAtAATCTT-------GCTTGTGAAAGcCAACcACtAA
BtRf-BetaCoV/HeB2013 AGTAGAAGgCACACAAGGAATGGAtAATCTT-------GCTTGTGAAAGcCAACcACCAA
SARS_CORONAVIRUS gCTCcaAttttggtgcaatttcAAGTgtTttAAAtgatATCCTttCAcgtcttgacaaag
Severe_acute_respiratory_syndrom tCTCTGAAG-------------AAGTAGTGGAAA----ATCCTACCAT------------
SARS_coronavirus_civet007 CCTCTGAAG-------------AAGTAGTGGAAA----ATCCTACCAT------------
SARS_coronavirus_GZ50 CCTCTGAAG-------------AAGTAGTGGAAA----ATCCTACCAT------------
SARS_coronavirus_Taiwan_TC1 CCTCTGAAG-------------AAGTAGTGGAAA----ATCCTACCAT------------
Bat_coronavirus_(BtCoV/273/2005) CCTCTGAAG-------------AAGTAGTGGAAA----ATCCTACCgT------------
BtRf-BetaCoV/HeB2013 CCTCTGAAG-------------AAGTAGTGGAAA----ATCCTACCgT------------
SARS_CORONAVIRUS ttgaggCtGAAGtgcaAAtTgATAGgtTGaTcACagGcAgACTtCaaAgtTTGcAGaCAt
Severe_acute_respiratory_syndrom -----ACAGAAa---GAcGTtcTtGAGTG-TaAtGTGAAAACTACCGAAGTTGTAGGag-
SARS_coronavirus_civet007 -----ACAGAAG---GAAGTCATAGAGTG-TGACGTGAAAACTACCGAAGTTGTAGGCA-
SARS_coronavirus_GZ50 -----ACAGAAG---GAAGTCATAGAGTG-TGACGTGAAAACTACCGAAGTTGTAGGCA-
SARS_coronavirus_Taiwan_TC1 -----ACAGAAG---GAAGTCATAGAGTG-TGACGTGAAAACTACCGAAGTTGTAGGCA-
Bat_coronavirus_(BtCoV/273/2005) -----ACAGAAG---GAAGTaATAGAGTG-TGACGTGAAAACTACCGAAGTTGTAGGCA-
BtRf-BetaCoV/HeB2013 -----ACAGAAG---GAAGTaATAGAGTG-TGACGTGAAAAtTACCGAAGTTGTAGGCA-
SARS_CORONAVIRUS ATGTgActcaacaatTAaTTAgAgCtgCAGaaatcagagcttctgctaatcttgctgctA
Severe_acute_respiratory_syndrom AcaTtA---------TACTTAAACCAgCAa-----------------------------A
SARS_coronavirus_civet007 ATGTCA---------TACTTAAACCATCAG-----------------------------A
SARS_coronavirus_GZ50 ATGTCA---------TACTTAAACCATCAG-----------------------------A
SARS_coronavirus_Taiwan_TC1 ATGTCA---------TACTTAAACCATCAG-----------------------------A
Bat_coronavirus_(BtCoV/273/2005) ATGTCA---------TACTaAAACCATCAG-----------------------------A
BtRf-BetaCoV/HeB2013 ATGTCA---------TACTaAAACCATCAG-----------------------------A
SARS_CORONAVIRUS ctAAaaTGTCAgAGTgtgtacttggACaatcaAaAAGAGTTgatTttTGtGGaaagggct
Severe_acute_respiratory_syndrom TaAtaGTtTaAAAaT---------tAC-----AgAAGAGgTtGGcCAcacaG--------
SARS_coronavirus_civet007 TGAAGGTGTtAAAGT---------AAC-----ACAAGAGTTAGGTCATGAGG--------
SARS_coronavirus_GZ50 TGAAGGTGTtAAAGT---------AAC-----ACAAGAGTTAGGTCATGAGG--------
SARS_coronavirus_Taiwan_TC1 TGAAGGTGTtAAAGT---------AAC-----ACAAGAGTTAGGTCATGAGG--------
Bat_coronavirus_(BtCoV/273/2005) cGAAGGTGTCAAAGT---------gAC-----ACAAGAGTTAGGcCATGAaG--------
BtRf-BetaCoV/HeB2013 cGAAGGTGTCAAAGT---------gAC-----ACAAGAGTTAGGcCATGAaG--------
SARS_CORONAVIRUS atcATCTTATGtccttccctcagtcaGCacCTcATgGTGtAgtcTtCttGCATgtgactt
Severe_acute_respiratory_syndrom ---ATCTaATG---------------GCTGCTTAT-GTaGAcAATtCtAGtcT-------
SARS_coronavirus_civet007 ---ATCTTATG---------------GCTGCTTAT-GTGGAAAAcACAAGCAT-------
SARS_coronavirus_GZ50 ---ATCTTATG---------------GCTGCTTAT-GTGGAAAAcACAAGCAT-------
SARS_coronavirus_Taiwan_TC1 ---ATCTTATG---------------GCTGCTTAT-GTGGAAAAcACAAGCAT-------
Bat_coronavirus_(BtCoV/273/2005) ---ATCTaATG---------------GCTGCTTAT-GTaGAAAATACAAGCAT-------
BtRf-BetaCoV/HeB2013 ---ATCTaATG---------------GCTGCTTAT-GTaGAAAATACAAGCAT-------
SARS_CORONAVIRUS atgtccctgcACaAgaAAagAACtTcAcaActgctcCTgcCAtTtGtCaT-GaTggAAAA
Severe_acute_respiratory_syndrom ---------TACtATTAAGAAACCTAATGA-----atTaTCtagAGtaTTAGGTTTgAAA
SARS_coronavirus_civet007 ---------TACCATTAAGAAACCTAATGA-----GCTTTCACTAGCCTTAGGTTTAAAA
SARS_coronavirus_GZ50 ---------TACCATTAAGAAACCTAATGA-----GCTTTCACTAGCCTTAGGTTTAAAA
SARS_coronavirus_Taiwan_TC1 ---------TACCATTAAGAAACCTAATGA-----GCTTTCACTAGCCTTAGGTTTAAAA
Bat_coronavirus_(BtCoV/273/2005) ---------TACCATTAAGAAACCTAATGA-----GCTcTCgtTgGCCTTAGGTTTAAAA
BtRf-BetaCoV/HeB2013 ---------TACCATTAAGAAACCTAATGA-----GCTcTCgtTgGCCTTAGGTTTAAAA
SARS_CORONAVIRUS gCACactttcCTCgTgaaGGTgTcttTGtttcaAATgGcacaCacTGGtttgtaacacAa
Severe_acute_respiratory_syndrom ACcCTTGCtACTCAT---GGTtTaGCTGCtgTTAATAGTGTCCCTTGG----------ga
SARS_coronavirus_civet007 ACAaTTGCCACTCAT---GGTATTGCTGCAATTAATAGTGTtCCTTGG----------AG
SARS_coronavirus_GZ50 ACAaTTGCCACTCAT---GGTATTGCTGCAATTAATAGTGTtCCTTGG----------AG
SARS_coronavirus_Taiwan_TC1 ACAaTTGCCACTCAT---GGTATTGCTGCAATTAATAGTGTtCCTTGG----------AG
Bat_coronavirus_(BtCoV/273/2005) ACACTTGCCACTCAT---GGTgcTGCTGCAATcAATAGTGTCCCTTGG----------AG
BtRf-BetaCoV/HeB2013 ACACTTGCCACTCAT---GGTgcTGCTGCAATcAATAGTGTCCCgTGG----------AG
SARS_CORONAVIRUS aggAATTTTtatgaAccaCAAAtCATTaCTAcaGACAAcacatttgtgtctggtaactgt
Severe_acute_respiratory_syndrom TActATagctaaTTATGctAAgCCtTTtCT--taACAA----------------------
SARS_coronavirus_civet007 TAAAATTTTGGCTTATGTCAAACCATTCtTA-GGACA-----------------------
SARS_coronavirus_GZ50 TAAAATTTTGGCTTATGTCAAACCATTCtTA-GGACA-----------------------
SARS_coronavirus_Taiwan_TC1 TAAAATTTTGGCTTATGTCAAACCATTCtTA-GGACA-----------------------
Bat_coronavirus_(BtCoV/273/2005) TAAggTTTTGGCTTATGTtAAgCCtTTtCTA-GGACA-----------------------
BtRf-BetaCoV/HeB2013 TAAggTTTTGGCTTATGTtAAgCCtTTtCTA-GGACA-----------------------
SARS_CORONAVIRUS gatgttgtAatAGgAATTgtcaACAACAcagtttatgatcctttgCAAcCTGaaTTAgac
Severe_acute_respiratory_syndrom --------AGttGttAgT----ACAACta----------------CtAACataGTTA---
SARS_coronavirus_civet007 --------AGCAGCAATT----ACAACAT----------------CAAAtTGCGcTA---
SARS_coronavirus_GZ50 --------AGCAGCAATT----ACAACAT----------------CAAAtTGCGcTA---
SARS_coronavirus_Taiwan_TC1 --------AGCAGCAATT----ACAACAT----------------CAAAtTGCGcTA---
Bat_coronavirus_(BtCoV/273/2005) --------AGCAaCAgTc----ACAACAT----------------CcAACTGCaTgA---
BtRf-BetaCoV/HeB2013 --------AGCAaCAgTc----ACAACAT----------------CcAACTGCaTgA---
SARS_CORONAVIRUS tcattcaaggAGgagTTAGataAAtaT---TTTAAgAATcATAcatcaccagatgtTGat
Severe_acute_respiratory_syndrom ----------cacGgTgtttAaAcCGTGTtTgTActAATTATA-------------TGCC
SARS_coronavirus_civet007 ----------AGAGATTAGCACAACGTGTGTTTAACAATTATA-------------TGCC
SARS_coronavirus_GZ50 ----------AGAGATTAGCACAACGTGTGTTTAACAATTATA-------------TGCC
SARS_coronavirus_Taiwan_TC1 ----------AGAGATTAGCACAACGTGTGTTTAACAATTATA-------------TGCC
Bat_coronavirus_(BtCoV/273/2005) ----------AGAaATgtGtgCAgCGcaTtTTTAACAAcTATA-------------TGCC
BtRf-BetaCoV/HeB2013 ----------AGAaATgtGtgCAgCGcaTtTTTAACAAcTATA-------------TGCC
SARS_CORONAVIRUS TTAgGTGacatctcTggCATTAaTGcTtCAgTTGTaaACaTTcAaaAAgAaattgaccGc
Severe_acute_respiratory_syndrom TTATtTc------TTTACtTTATTGcTaCAATTGTGTACTTTTACTAgAA--------GT
SARS_coronavirus_civet007 TTATGTG------TTTACATTATTGTTCCAATTGTGTACTTTTACTAAAA--------GT
SARS_coronavirus_GZ50 TTATGTG------TTTACATTATTGTTCCAATTGTGTACTTTTACTAAAA--------GT
SARS_coronavirus_Taiwan_TC1 TTATGTG------TTTACATTATTGTTCCAATTGTGTACTTTTACTAAAA--------GT
Bat_coronavirus_(BtCoV/273/2005) TTATGTc------aTTACATTATTaTTCCAgTTGTGcACTTTcACaAAgg--------Gc
BtRf-BetaCoV/HeB2013 TTATGTc------aTTACATTATTaTTCCAgTTGTGcACTTTcACaAAgg--------Gc
SARS_CORONAVIRUS ctCAATgaggttgcCaAGAATTtaAatgaatctCTcatCgAtCTcCAAgaAcTtggAAAg
Severe_acute_respiratory_syndrom ACaAAT-------TCTAGAATTAaAG-------CaTCtaTgCCgACtACTATaGCaAAg-
SARS_coronavirus_civet007 ACCAAT-------TCTAGAATTAGAG-------CTTCACTACCTACAACTATTGCTAAA-
SARS_coronavirus_GZ50 ACCAAT-------TCTAGAATTAGAG-------CTTCACTACCTACAACTATTGCTAAA-
SARS_coronavirus_Taiwan_TC1 ACCAAT-------TCTAGAATTAGAG-------CTTCACTACCTACAACTATTGCTAAA-
Bat_coronavirus_(BtCoV/273/2005) ACCAAc-------TCaAGAATTAGAG-------CaTCACTtCCTACAACTATTGCTAAA-
BtRf-BetaCoV/HeB2013 ACCAAc-------TCaAGAATTAGAG-------CaTCACTtCCTACAAtTATTGCTAAA-
SARS_CORONAVIRUS tatgAgcAGTaTatAaAaTGgccatggtacattTgGCTAggTTtTatagctgGcTTGatT
Severe_acute_respiratory_syndrom ----AATAcTGTTAAGAGTG-------------TcGgTAAATTtT-------GTcTaGAg
SARS_coronavirus_civet007 ----AATAGTGTTAAGAGTG-------------TTGCTAAATTAT-------GTTTGGAT
SARS_coronavirus_GZ50 ----AATAGTGTTAAGAGTG-------------TTGCTAAATTAT-------GTTTGGAT
SARS_coronavirus_Taiwan_TC1 ----AATAGTGTTAAGAGTG-------------TTGCTAAATTAT-------GTTTGGAT
Bat_coronavirus_(BtCoV/273/2005) ----AATAGTGTTAAGAGTG-------------TTGCaAAATTAT-------GTTTGGAc
BtRf-BetaCoV/HeB2013 ----AATAGTGTTAAGAGTG-------------TTGCaAAATTAT-------GTTTGGAc
SARS_CORONAVIRUS GCCatagtaatGGtgacAATTATGctttgctgtaTGAccAGTtgCtgtAgTTgTCTcAAg
Severe_acute_respiratory_syndrom GCt--------tcatTTAATTATt----------TGA--AGTCACCtAAtTTTTCTAAA-
SARS_coronavirus_civet007 GCC--------GGCATTAATTATG----------TGA--AGTCACCCAAATTTTCTAAA-
SARS_coronavirus_GZ50 GCC--------GGCATTAATTATG----------TGA--AGTCACCCAAATTTTCTAAA-
SARS_coronavirus_Taiwan_TC1 GCC--------GGCATTAATTATG----------TGA--AGTCACCCAAATTTTCTAAA-
Bat_coronavirus_(BtCoV/273/2005) Gtt--------tGCATTgATTATG----------TGA--AaTCtCCtAAATcTTCTAAA-
BtRf-BetaCoV/HeB2013 Gtt--------tGCATTgATTATG----------TGA--AaTCtCCtAAATcTTCTAAA-
SARS_CORONAVIRUS ggctgTTGTTC---------tTGTGGaTccTGcTGcaaatttgatgaagacgactctgag
Severe_acute_respiratory_syndrom -----cTGaTaAatATtatAATtTGGtTtTTacTa-------------------------
SARS_coronavirus_civet007 -----TTGTTCACAATCGCtATGTGGCTATTGTTG-------------------------
SARS_coronavirus_GZ50 -----TTGTTCACAATCGCtATGTGGCTATTGTTG-------------------------
SARS_coronavirus_Taiwan_TC1 -----TTGTTCACAATCGCtATGTGGCTATTGTTG-------------------------
Bat_coronavirus_(BtCoV/273/2005) -----TTGTTCACAATtGCAATGTGGCTATTGTTG-------------------------
BtRf-BetaCoV/HeB2013 -----TTGTTCACAATtGCAATGTGGCTATTGTTG-------------------------
SARS_CORONAVIRUS ccagtgctcaaaggagtcaaattacattacacataaacgaacTTAtGgATTTGtTTatgA
Severe_acute_respiratory_syndrom ------------------------------------------TTAAGTgTTTGCcT---A
SARS_coronavirus_civet007 ------------------------------------------TTAAGTATTTGCTT---A
SARS_coronavirus_GZ50 ------------------------------------------TTAAGTATTTGCTT---A
SARS_coronavirus_Taiwan_TC1 ------------------------------------------TTAAGTATTTGCTT---A
Bat_coronavirus_(BtCoV/273/2005) ------------------------------------------TTAAGcATTTGCTT---g
BtRf-BetaCoV/HeB2013 ------------------------------------------TTAAGcATTTGCTT---g
SARS_CORONAVIRUS GaaTCTTcAcaaT-TGgAACTGtaaCTTTgaagcaaGGTGaAaTC------AAggaTGcT
Severe_acute_respiratory_syndrom GGTTCTTTAATCTActcAACcGCTGCTTT------aGGTGTttTaaTgTCTAATTTaGGc
SARS_coronavirus_civet007 GGTTCTcTAATCTgTGTAACTGCTGCTTT------TGGTGTACTCTTATCTAATTTTGGT
SARS_coronavirus_GZ50 GGTTCTcTAATCTgTGTAACTGCTGCTTT------TGGTGTACTCTTATCTAATTTTGGT
SARS_coronavirus_Taiwan_TC1 GGTTCTcTAATCTgTGTAACTGCTGCTTT------TGGTGTACTCTTATCTAATTTTGGT
Bat_coronavirus_(BtCoV/273/2005) GGTTCaTTAATCTATGTgACTGCaGCTTT------TGGTGTgCTtTTATCTAATTTaGGc
BtRf-BetaCoV/HeB2013 GGTTCaTTAATCTATGTgACTGCaGCTTT------TGGTGTgCTtTTATCTAATTTaGGc
SARS_CORONAVIRUS ACTCCTTCagATTtTgtTcGcGcTActGcAacG-ATAcCgATaCa---AgCcTCACTcCc
Severe_acute_respiratory_syndrom AtgCCTTCTTAcTGTAcTGGTtacAGAGAAggcTATtTgAAcTCtaCTAAtGTCACTAtT
SARS_coronavirus_civet007 gCTCCTTCTTATTGTAATGGTGTTAGAGAATTGTATcTtAATTCGTCTAACGTtACTACT
SARS_coronavirus_GZ50 gCTCCTTCTTATTGTAATGGcGTTAGAGAATTGTATcTtAATTCGTCTAACGTtACTACT
SARS_coronavirus_Taiwan_TC1 gCTCCTTCTTATTGTAATGGcGTTAGAGAATTGTATcTtAATTCGTCTAACGTtACTACT
Bat_coronavirus_(BtCoV/273/2005) AtcCCTTCTTATTGTggTGGTGTTAGAGAtTTGTATATCAATTCcTCTAAtGTCACcAtT
BtRf-BetaCoV/HeB2013 AtcCCTTCTTATTGTggTGGTGTTAGAGAtTTGTATATCAATTCaTCTAAtGTCACcAtT
SARS_CORONAVIRUS tttcggATGGcTTatTGTtggcGTTgcacTtCTTGCtGTtTTTcatagcGcTTccaaaat
Severe_acute_respiratory_syndrom ------gcaaccTaCTGTactGGTTCTaTaCCTTGtAGTgTTT------GTcT-------
SARS_coronavirus_civet007 ------ATGGATTTCTGTGAAGGTTCTTTTCCTTGCAGcATTT------GTTT-------
SARS_coronavirus_GZ50 ------ATGGATTTCTGTGAAGGTTCTTTTCCTTGCAGcATTT------GTTT-------
SARS_coronavirus_Taiwan_TC1 ------ATGGATTTCTGTGAAGGTTCTTTTCCTTGCAGcATTT------GTTT-------
Bat_coronavirus_(BtCoV/273/2005) ------ATGGAcTTCTGTGAgGGcTCTTTTCCTTGtAGTgTTT------GTTT-------
BtRf-BetaCoV/HeB2013 ------ATGGAcTTCTGTGAgGGTTCTTTTCCTTGtAGTgTTT------GTTT-------
SARS_CORONAVIRUS cataaccctcaaaaagAgaTGGcaAcTAGcactctccaagggtgTTCaCTTtgTTtgcAa
Severe_acute_respiratory_syndrom ----------------tAGTGG--tTTAG--------------ATTCttTaGAcaCcTAT
SARS_coronavirus_civet007 ----------------AAGTGG--ATTAG--------------AcTCCCTTGATTCTTAT
SARS_coronavirus_GZ50 ----------------AAGTGG--ATTAG--------------AcTCCCTTGATTCTTAT
SARS_coronavirus_Taiwan_TC1 ----------------AAGTGG--ATTAG--------------AcTCCCTTGATTCTTAT
Bat_coronavirus_(BtCoV/273/2005) ----------------AAGTGG--AcTAG--------------ATTCtCTTGATTCTTAc
BtRf-BetaCoV/HeB2013 ----------------AAGTGG--AcTAG--------------ATTCtCTTGATTCTTAc
SARS_CORONAVIRUS CttGCTgttgttgTTTGtAACagTTtActcacACctTTTgcTCGTtgctGCTGGcCTTGA
Severe_acute_respiratory_syndrom CCttCT-------TTaGAAACtATaCAaaTt-ACcATTTCATCtTtTAAatgGGAtTTaA
SARS_coronavirus_civet007 CCAGCT-------cTTGAAACCATTCAGGTG-ACGATTTCATCGTATAAGCTaGACTTGA
SARS_coronavirus_GZ50 CCAGCT-------cTTGAAACCATTCAGGTG-ACGATTTCATCGTAcAAGCTaGACTTGA
SARS_coronavirus_Taiwan_TC1 CCAGCT-------cTTGAAACCATTCAGGTG-ACGATTTCATCGTAcAAGCTaGACTTGA
Bat_coronavirus_(BtCoV/273/2005) CCcGCT-------TTaGAAACtATTCAGGTt-ACGATTTCATCGTATAAGtTGGACcTaA
BtRf-BetaCoV/HeB2013 CCcGCT-------TTaGAAACtATTCAGGTt-ACGATTTCATCGTATAAGtTGGACcTaA
SARS_CORONAVIRUS agccccttttctctAtcTTTAtGcTTTAGtCtacttcttGCaGAGTataaactttgtaag
Severe_acute_respiratory_syndrom -------------CtgcTTTtGG-cTTAGtt--------GCaGAGT--------------
SARS_coronavirus_civet007 -------------CAATTTTAGG-TcTgGCC--------GCTGAGT--------------
SARS_coronavirus_GZ50 -------------CAATTTTAGG-TcTgGCC--------GCTGAGT--------------
SARS_coronavirus_Taiwan_TC1 -------------CAATTTTAGG-TcTgGCC--------GCTGAGT--------------
Bat_coronavirus_(BtCoV/273/2005) -------------CAtTTTTAGG-TTTAGCa--------GCTGAaT--------------
BtRf-BetaCoV/HeB2013 -------------CAtTTTTgGG-TTTAGCa--------GCTGAaT--------------
SARS_CORONAVIRUS aataataatgaGGcTTTGGCtTtgctggAaATGccGTTCcaAAAAccCaTTacTTTATgA
Severe_acute_respiratory_syndrom ----------GGtTTTTGGCAT------ATATtcTtTTCACtAggTTtTTcTATgTAcTt
SARS_coronavirus_civet007 ----------GGGTTTTGGCAT------ATATGTTGTTCACAAAATTCTTTTATTTATTA
SARS_coronavirus_GZ50 ----------GGGTTTTGGCAT------ATATGTTGTTCACAAAATTCTTTTATTTATTA
SARS_coronavirus_Taiwan_TC1 ----------GGGTTTTGGCAT------ATATGTTGTTCACAAAATTCTTTTATTTATTA
Bat_coronavirus_(BtCoV/273/2005) ----------GGtTTTTGGCAT------AcATGTTGTTtACAAAATTtTTcTAcTTAcTt
BtRf-BetaCoV/HeB2013 ----------GGtTTTTGGCAT------AcATGTTGTTtACAAAATTtTTcTAcTTAcTt
SARS_CORONAVIRUS tGccaactatTtTCTtTGCTggcATaCtAatTGTTacgactaTTGtaTAccTTaCaAtag
Severe_acute_respiratory_syndrom GG--------atTggCTGCaATcATGC-AatTGTT-----tTTcaGCTATTTTGCag---
SARS_coronavirus_civet007 GG--------TCTtTCaGCTATAATGC-AGGTGTT-----CTTTGGCTATTTTGCTA---
SARS_coronavirus_GZ50 GG--------TCTtTCaGCTATAATGC-AGGTGTT-----CTTTGGCTATTTTGCTA---
SARS_coronavirus_Taiwan_TC1 GG--------TCTtTCaGCTATAATGC-AGGTGTT-----CTTTGGCTATTTTGCTA---
Bat_coronavirus_(BtCoV/273/2005) GG--------TCTCTCTGCTATAATGC-AGGTGTT-----CTTTGGCTAcTTTGCTA---
BtRf-BetaCoV/HeB2013 GG--------TCTCTCTGCTATAATGC-AGGTGTT-----CTTTGGCTAcTTTGCTA---
SARS_CORONAVIRUS tGTaAcTTCtTCAattgTcaTTactTCAgGTGaTggcacaacaagtcctatttcTgAaCA
Severe_acute_respiratory_syndrom -taCATTTtATtAGtAATTCTTGGCTtATGTGGT--------------------TaATaA
SARS_coronavirus_civet007 -GTCATTTCATCAGCAATTCTTGGCTCATGTGGT--------------------TTATCA
SARS_coronavirus_GZ50 -GTCATTTCATCAGCAATTCTTGGCTCATGTGGT--------------------TTATCA
SARS_coronavirus_Taiwan_TC1 -GTCATTTCATCAGCAATTCTTGGCTCATGTGGT--------------------TTATCA
Bat_coronavirus_(BtCoV/273/2005) -GTCATTTCATCAGCAATTCaTGGCTtATGTGGT--------------------TTATCA
BtRf-BetaCoV/HeB2013 -GTCATTTCATCAGCAATTCaTGGCTtATGTGGT--------------------TTATCA
SARS_CORONAVIRUS TgAcTAccagattggtggTTaTACtgaaAAATGG-----GaaTCTGgAgTaaaagactgt
Severe_acute_respiratory_syndrom TTAaTc------------TTGTAC----AAATGGCcCCgaTTTCaGCtATG---------
SARS_coronavirus_civet007 TTAGTA------------TTGTAC----AAATGGCACCCGTTTCTGCAATG---------
SARS_coronavirus_GZ50 TTAGTA------------TTGTAC----AAATGGCACCCGTTTCTGCAATG---------
SARS_coronavirus_Taiwan_TC1 TTAGTA------------TTGTAC----AAATGGCACCCGTTTCTGCAATG---------
Bat_coronavirus_(BtCoV/273/2005) TTAGcA------------TTGTAC----AAATGGCgCCtGTTTCTGCtATG---------
BtRf-BetaCoV/HeB2013 TTAGcA------------TTGTAC----AAATGGCgCCtGTTTCTGCtATG---------
SARS_CORONAVIRUS GTTgtatTacACAgtTaCTTcaCTTCagaCTATTACc--------AGCTgTacTCAacTC
Severe_acute_respiratory_syndrom GTTAGaATGTACATCTTCTTTGCaTCaTTtTATTAtgTATGGAAAAGtTATGTgCATgTt
SARS_coronavirus_civet007 GTTAGGATGTACATCTTCTTTGCTTCTTTCTAcTACATATGGAAgAGCTATGTTCATATC
SARS_coronavirus_GZ50 GTTAGGATGTACATCTTCTTTGCTTCTTTCTAcTACATATGGAAgAGCTATGTTCATATC
SARS_coronavirus_Taiwan_TC1 GTTAGGATGTACATCTTCTTTGCTTCTTTCTAcTACATATGGAAgAGCTATGTTCATATC
Bat_coronavirus_(BtCoV/273/2005) GTcAGGATGTACATtTTCTTTGCTTCTTTCTATTAtATATGGAAAAGCTATGTTCATATt
BtRf-BetaCoV/HeB2013 GTcAGGATGTACATtTTCTTTGCTTCTTTCTATTAtATATGGAAAAGCTATGTTCATATt
SARS_CORONAVIRUS AattgagtacagacactggtgTtGAacaTgttACCTtcTtcAtcTaCAataaaattgtTG
Severe_acute_respiratory_syndrom g--------------------TaGAcGGTTGtAatTCaTCaACTTGtA----------TG
SARS_coronavirus_civet007 A--------------------TGGATGGTTGCACCTaTTCGACTTGCA----------TG
SARS_coronavirus_GZ50 A--------------------TGGATGGTTGCACCTCTTCGACTTGCA----------TG
SARS_coronavirus_Taiwan_TC1 A--------------------TGGATGGTTGCACCTCTTCGACTTGCA----------TG
Bat_coronavirus_(BtCoV/273/2005) A--------------------TGGATGGTTGCACtTCTTCGACTTGCA----------TG
BtRf-BetaCoV/HeB2013 A--------------------TGGATGGTTGCACtTCTTCaACgTGCA----------TG
SARS_CORONAVIRUS ATGaGCctgAAGaaCAtgTCcaaattCACaCaaTcGAcgGTtCAtCcggagTTGTTAATc
Severe_acute_respiratory_syndrom ATGTGtTACAAaCGtA-ATaGaGCaACAaGa-GTcGAaTGTACAACT---ATTGTTAATG
SARS_coronavirus_civet007 ATGTGCTAtAAGCGCA-ATCGTGCCACACGC-GTTGAGTGTACAACT---ATTGTTAATG
SARS_coronavirus_GZ50 ATGTGCTAtAAGCGCA-ATCGTGCCACACGC-GTTGAGTGTACAACT---ATTGTTAATG
SARS_coronavirus_Taiwan_TC1 ATGTGCTAtAAGCGCA-ATCGTGCCACACGC-GTTGAGTGTACAACT---ATTGTTAATG
Bat_coronavirus_(BtCoV/273/2005) ATGTGCTACAAGCGCA-ATCGTGCtACgCGC-GTTGAGTGTACAACT---ATaGTTAATG
BtRf-BetaCoV/HeB2013 ATGTGCTACAAGCGCA-ATCGTGCtACACGC-GTTGAGTGTACAACT---ATaGTTAATG
SARS_CORONAVIRUS cagTaAtGgaAcCaaTtTATG-aTgaaCcgAcGacGaCtactagcgtGCcTtTGtAAG--
Severe_acute_respiratory_syndrom GtgTtAgaAGgTCcTTtTATGTCTATGCtAATGGAGGtaaa-----GGCTTtTGCAAact
SARS_coronavirus_civet007 GCATGAAGAGATCTTTCTATGTCTATGCAAATGGAGGCCGT-----GGCTTCTGCAAGAC
SARS_coronavirus_GZ50 GCATGAAGAGATCTTTCTATGTCTATGCAAATGGAGGCCGT-----GGCTTCTGCAAGAC
SARS_coronavirus_Taiwan_TC1 GCATGAAGAGATCTTTCTATGTCTATGCAAATGGAGGCCGT-----GGCTTCTGCAAGAC
Bat_coronavirus_(BtCoV/273/2005) GCATGAAaAGATCTTTCTATGTCTATGCAAAcGGAGGCCGT-----GGCTTCTGtAAGgC
BtRf-BetaCoV/HeB2013 GCATGAAaAGATCTTTCTATGTCTATGCAAAcGGAGGCCGT-----GGCTTCTGtAAGgC
SARS_CORONAVIRUS -CACAAgctGAtgaGTacgAAcTTaTGtACtCATTC-GTttcGGaAgagacagGTACgTT
Severe_acute_respiratory_syndrom aCACAATTGGAATTGTgTtAA-TTGTG-AtACATTCTGTgCTGGTA-------GTACATT
SARS_coronavirus_civet007 TCACAATTGGAATTGTCTCAA-TTGTG-ACACATTtTGcACTGGTA-------GTACATT
SARS_coronavirus_GZ50 TCACAATTGGAATTGTCTCAA-TTGTG-ACACATTtTGcACTGGTA-------GTACATT
SARS_coronavirus_Taiwan_TC1 TCACAATTGGAATTGTCTCAA-TTGTG-ACACATTtTGcACTGGTA-------GTACATT
Bat_coronavirus_(BtCoV/273/2005) TCACAATTGGAAcTGTCTtAA-TTGTG-AtACATTCTGTACTGGTA-------GTACtTT
BtRf-BetaCoV/HeB2013 TCACAATTGGAAcTGTCTtAA-TTGTG-AtACATTCTGTACTGGTA-------GTACtTT
SARS_CORONAVIRUS aATagtTaATagcGtacttcTTttTCtTGcTTtcgTGgtAtTCttGcTagttAcACtAgc
Severe_acute_respiratory_syndrom tATTAGTGATGAAG------TTGCgaGaGAcT---TGTCACTaCAGTTTAAAAGACCAAT
SARS_coronavirus_civet007 CATTAGTGATGAAG------TTGCTCGTGATT---TGTCACTCCAGTTTAAAAGACCAAT
SARS_coronavirus_GZ50 CATTAGTGATGAAG------TTGCTCGTGATT---TGTCACTCCAGTTTAAAAGACCAAT
SARS_coronavirus_Taiwan_TC1 CATTAGTGATGAAG------TTGCTCGTGATT---TGTCACTCCAGTTTAAAAGACCAAT
Bat_coronavirus_(BtCoV/273/2005) CATTAGcGAcGAAG------TaGCTCaTGATT---TGTCACTCCAGTTTAAgAGACCAAT
BtRf-BetaCoV/HeB2013 CATcAGcGAcGAAG------TaGCTCGTGATT---TGTCACTCCAGTTTAAgAGACCAAT
SARS_CORONAVIRUS CAtCCtTACTGcgCttcgATtGTgtgcgTAcTGcTGcaATAtTGTTaacGTGAgtcttgt
Severe_acute_respiratory_syndrom aAAtCCTACTGACCAGTCtTCtT----AcATcGTTG--ATAGTGTTaCaGTGAA------
SARS_coronavirus_civet007 CAACCCTACTGACCAGTCATCGT----ATATTGTTG--ATAGTGTTGCTGTGAA------
SARS_coronavirus_GZ50 CAACCCTACTGACCAGTCATCGT----ATATTGTTG--ATAGTGTTGCTGTGAA------
SARS_coronavirus_Taiwan_TC1 CAACCCTACTGACCAGTCATCGT----ATATTGTTG--ATAGTGTTGCTGTGAA------
Bat_coronavirus_(BtCoV/273/2005) tAAtCCTACaGACCAGTCtTCtT----ATgTTGTTG--ATAGTGTTGCTGTGAA------
BtRf-BetaCoV/HeB2013 tAAtCCTACaGACCAGTCtTCtT----ATgTTGTTG--ATAGTGTcGCTGTGAA------
SARS_CORONAVIRUS AAAaccTtCttTTtACgTtTACTctcgTGtTAAaaatctgaattcttctagagttcctga
Severe_acute_respiratory_syndrom gAATGGTtCcaTcCAtCTtTACTT---TGATAAaG-------------------------
SARS_coronavirus_civet007 AAATGGcGCGCTTCACCTCTACTT---TGAcAAGG-------------------------
SARS_coronavirus_GZ50 AAATGGcGCGCTTCACCTCTACTT---TGAcAAGG-------------------------
SARS_coronavirus_Taiwan_TC1 AAATGGcGCGCTTCACCTCTACTT---TGAcAAGG-------------------------
Bat_coronavirus_(BtCoV/273/2005) gAAcGGTGCaCTcCACCTCTACTT---TGATAAGG-------------------------
BtRf-BetaCoV/HeB2013 gAAcGGTGCaCTcCAtCTCTACTT---TGATAAGG-------------------------
SARS_CORONAVIRUS tcttCTGGTCtAAAcGAaCTAaatattAtATtaGtTtTtCtgTTTgGaacttTaAtTTTA
Severe_acute_respiratory_syndrom ----CTGGTC-AAAAGACtTATGAaAGACATtCtCTCTCtCATTTTG-----TtAAcTTA
SARS_coronavirus_civet007 ----CTGGTC-AAAAGACCTATGAGAGACATCCGCTCTCCCATTTTG-----TCAATTTA
SARS_coronavirus_GZ50 ----CTGGTC-AAAAGACCTATGAGAGACATCCGCTCTCCCATTTTG-----TCAATTTA
SARS_coronavirus_Taiwan_TC1 ----CTGGTC-AAAAGACCTATGAGAGACATCCGCTCTCCCATTTTG-----TCAATTTA
Bat_coronavirus_(BtCoV/273/2005) ----CTGGTC-AgAAGACtTAcGAGAGACAcCCaCTtTCtCATTTTG-----TCAATTTg
BtRf-BetaCoV/HeB2013 ----CTGGTC-AgAAGACtTAcGAGAGACAcCCaCTtTCtCtTTTTG-----TCAATTTg
SARS_CORONAVIRUS GccatggcagattccaacggtactattACcgTTgaAGAGCTtAaAAagCTccttgaacaa
Severe_acute_respiratory_syndrom G--------------------------ACAAccTGAGAGCTAAtAACACT----------
SARS_coronavirus_civet007 G--------------------------ACAATTTGAGAGCTAACAACACT----------
SARS_coronavirus_GZ50 G--------------------------ACAATTTGAGAGCTAACAACACT----------
SARS_coronavirus_Taiwan_TC1 G--------------------------ACAATTTGAGAGCTAACAACACT----------
Bat_coronavirus_(BtCoV/273/2005) G--------------------------ACAATcTGAGAGCTAACAACACT----------
BtRf-BetaCoV/HeB2013 G--------------------------ACAATcTGAGAGCTAACAACACT----------
SARS_CORONAVIRUS tggaacctagtaAtAGGTTtcCTattccTTAcATGgatTtGTcTTctAcaattTGcCtAt
Severe_acute_respiratory_syndrom ------------AAAGGTTCAtTGCCTATTA-ATGTtATAGTTTTTGA-----TGGtAAa
SARS_coronavirus_civet007 ------------AAAGGTTCACTGCCTATTA-ATGTCATAGTTTTTGA-----TGGCAAG
SARS_coronavirus_GZ50 ------------AAAGGTTCACTGCCTATTA-ATGTCATAGTTTTTGA-----TGGCAAG
SARS_coronavirus_Taiwan_TC1 ------------AAAGGTTCACTGCCTATTA-ATGTCATAGTTTTTGA-----TGGCAAG
Bat_coronavirus_(BtCoV/273/2005) ------------AAgGGTTCAtTaCCTATTA-ATGTtATtGTcTTTGA-----cGGCAAG
BtRf-BetaCoV/HeB2013 ------------AAgGGTTCAtTaCCTATTA-ATGTtATtGTTTTTGA-----cGGCAAG
SARS_CORONAVIRUS gCCAAcaGgaAtagGTtTttgTaTAtaattaagttAaTtTtCcTCTGgcTgtTAtgGcCA
Severe_acute_respiratory_syndrom TCaAAATGtGAaGAaTCatCTgCaA----------AaTCaGCgTCTGTtTACTACAGTCA
SARS_coronavirus_civet007 TCCAAATGCGACGAGTCTGCTTCTA----------AGTCTGCTTCTGTgTACTACAGcCA
SARS_coronavirus_GZ50 TCCAAATGCGACGAGTCTGCTTCTA----------AGTCTGCTTCTGTgTACTACAGTCA
SARS_coronavirus_Taiwan_TC1 TCCAAATGCGACGAGTCTGCTTCTA----------AGTCTGCTTCTGTgTACTACAGTCA
Bat_coronavirus_(BtCoV/273/2005) TCCAAATGCGACGAGTCTGCcgCcA----------AGTCTGCaTCTGTtTAtTACAGTCA
BtRf-BetaCoV/HeB2013 TCCAAgTGCGAaGAGTCTGCcgCcA----------AGTCTGCaTCTGTtTAtTACAGTCA
SARS_CORONAVIRUS gtaactttagcttgttttgtgcttGCTGcTGTttacagaataaattgGatcACCggTgga
Severe_acute_respiratory_syndrom ------------------------GCTtATGT---------------GtCAACCTATaCT
SARS_coronavirus_civet007 ------------------------GCTGATGT---------------GCCAACCTATTCT
SARS_coronavirus_GZ50 ------------------------GCTGATGT---------------GCCAACCTATTCT
SARS_coronavirus_Taiwan_TC1 ------------------------GCTGATGT---------------GCCAACCTATTCT
Bat_coronavirus_(BtCoV/273/2005) ------------------------GCTtATGT---------------GCCAACCTATTCT
BtRf-BetaCoV/HeB2013 ------------------------GCTtATGT---------------GCCAACCTATTCT
SARS_CORONAVIRUS aTTGCTatcgCAAtggCTTGTcTtgtAgGcTtGAtgTgGctcagcTACTtcAttGcTTCt
Severe_acute_respiratory_syndrom GTTaCTaGAtCAgGCatTaGTgTCtGAtGTTGGtGATAG------TgCgGAA--GTTgCa
SARS_coronavirus_civet007 GTTGCTTGACCAAGCTCTTGTATCAGACGTTGGAGATAG------TACTGAA--GTTTCC
SARS_coronavirus_GZ50 GTTGCTTGACCAAGCTCTTGTATCAGACGTTGGAGATAG------TACTGAA--GTTTCC
SARS_coronavirus_Taiwan_TC1 GTTGCTTGACCAAGCTCTTGTATCAGACGTTGGAGATAG------TACTGAA--GTTTCC
Bat_coronavirus_(BtCoV/273/2005) GTTaCTTGACCAAGCTCTTGTtTCgGAtGTTGGtGATAG------TACcGAg--GTTTCt
BtRf-BetaCoV/HeB2013 GTTaCTTGACCAAGCTCTTGTtTCgGAtGTTGGtGATAG------TACcGAg--GTTTCt
SARS_CORONAVIRUS tTcAgacTGTTTGcgcgtAcGCgTtccATGTgGtCAttCaaTcCAGaAACTaacAtTcTT
Severe_acute_respiratory_syndrom GTTAAaATGTTTG-----ATGCTT---AcGTtaAtA-CgTTTTCAtCAACTTTTAacGTa
SARS_coronavirus_civet007 GTTAAGATGTTTG-----ATGCTT---ATGTCGACA-CCTTTTCAGCAACTTTTAGTGTT
SARS_coronavirus_GZ50 GTTAAGATGTTTG-----ATGCTT---ATGTCGACA-CCTTTTCAGCAACTTTTAGTGTT
SARS_coronavirus_Taiwan_TC1 GTTAAGATGTTTG-----ATGCTT---ATGTCGACA-CCTTTTCAGCAACTTTTAGTGTT
Bat_coronavirus_(BtCoV/273/2005) GTcAAGATGTTTG-----ATGCTT---ATGTCGACA-CCTTTTCAGCAACTTTTAGTGTT
BtRf-BetaCoV/HeB2013 GTcAAGATGTTTG-----ATGCTT---ATGTCGACA-CCTTTTCAGCAACTTTTAGTGTT
SARS_CORONAVIRUS CtcAacGtgccACTccAtGGCACTattcTGaccagACcGCTtctAGaaAGTgAaCt----
Severe_acute_respiratory_syndrom CCaATGGAAAAACTcAA-aaCACT----aGTTGCaACtGCagAagctGAacTtGCAAAGa
SARS_coronavirus_civet007 CCTATGGAAAAACTTAA-GGCACT----TGTTGCTACAGCTCACAGCGAGTTAGCAAAGG
SARS_coronavirus_GZ50 CCTATGGAAAAACTTAA-GGCACT----TGTTGCTACAGCTCACAGCGAGTTAGCAAAGG
SARS_coronavirus_Taiwan_TC1 CCTATGGAAAAACTTAA-GGCACT----TGTTGCTACAGCTCACAGCGAGTTAGCAAAGG
Bat_coronavirus_(BtCoV/273/2005) CCTATGGAAAAACTTAA-GGCACT----aGTgGCcACgGCTCAtAGtGAGTTgGCtAAGG
BtRf-BetaCoV/HeB2013 CCTATGGAAAAACTTAA-GGCACT----aGTgGCcACgGCTCAtAGtGAGTTgGCtAAGG
SARS_CORONAVIRUS -cGTAatcggAGcTGtgaTCCTTcgTggacAtcTTCGTaT----TGCtgGACAccaTcTa
Severe_acute_respiratory_syndrom aTGTgtCcTTAGAcaaTGTCtTaTCT----ACtTTtaTtTCAGCaGCtCGgCAAGGgtTT
SARS_coronavirus_civet007 GTGTAGCTTTAGATGGTGTCCTTTCT----ACATTCGTGTCAGCTGCCCGACAAGGTGTT
SARS_coronavirus_GZ50 GTGTAGCTTTAGATGGTGTCCTTTCT----ACATTCGTGTCAGCTGCCCGACAAGGTGTT
SARS_coronavirus_Taiwan_TC1 GTGTAGCTTTAGATGGTGTCCTTTCT----ACATTCGTGTCAGCTGCCCGACAAGGTGTT
Bat_coronavirus_(BtCoV/273/2005) GTGTtGCTTTgGATGGTGTCtTaTCc----ACATTtaTtTCAGCTGCCCGtCAAGGcGTT
BtRf-BetaCoV/HeB2013 GTGTtGCTTTgGATGGTGTCtTaTCc----ACATTtGTtTCAGCTGCCCGtCAAGGcGTT
SARS_CORONAVIRUS G--GAcgCtG----TGACAtcAAGGAcctgcctaaagaaatcacTGTTgcTacATcaCga
Severe_acute_respiratory_syndrom GTTGATtCaGATGTaGAaACtAAaGA------------------TGTTgTTGAATGTCTt
SARS_coronavirus_civet007 GTTGATACCGATGTTGACACAAAGGA------------------TGTTATTGAATGTCTC
SARS_coronavirus_GZ50 GTTGATACCGATGTTGACACAAAGGA------------------TGTTATTGAATGTCTC
SARS_coronavirus_Taiwan_TC1 GTTGATACCGATGTTGACACAAAGGA------------------TGTTATTGAATGTCTC
Bat_coronavirus_(BtCoV/273/2005) GTTGATACtGATGTTGAtACAAAGGA------------------cGTcATTGAATGTCTC
BtRf-BetaCoV/HeB2013 GTTGATACtGATGTTGAtACAAAGGA------------------cGTcATTGAATGTCTC
SARS_CORONAVIRUS AcgCTTTCttATtAC---aAaTTgGgAgcttcgcagcgtGTagCAGGTGactcaggtttt
Severe_acute_respiratory_syndrom AAAtTgTCACATCAaTCTGACaTAGAA------------GTtACtGGcG-----------
SARS_coronavirus_civet007 AAACTTTCACATCACTCTGACTTAGAA------------GTGACAGGTG-----------
SARS_coronavirus_GZ50 AAACTTTCACATCACTCTGACTTAGAA------------GTGACAGGTG-----------
SARS_coronavirus_Taiwan_TC1 AAACTTTCACATCACTCTGACTTAGAA------------GTGACAGGTG-----------
Bat_coronavirus_(BtCoV/273/2005) AAgCTTTCtCATCACTCTGACTTAGAA------------GTGACAGGTG-----------
BtRf-BetaCoV/HeB2013 AAgCTTTCtCATCACTCTGACTTAGAA------------GTGACAGGTG-----------
SARS_CORONAVIRUS gctgcatACAGTcGctACAgg---ATtggCAaCTATAA----aTTaAAcACAgacCattC
Severe_acute_respiratory_syndrom -------AtAGTTGTAAtAACTatATGCTCACCTATAACAAAGTTGAAAACATGACa-CC
SARS_coronavirus_civet007 -------ACAGTTGTAACAAtTTCATGCTCACCTATAAtAAgGTTGAAAACATGACG-CC
SARS_coronavirus_GZ50 -------ACAGTTGTAACAAtTTCATGCTCACCTATAAtAAgGTTGAAAACATGACG-CC
SARS_coronavirus_Taiwan_TC1 -------ACAGTTGTAACAAtTTCATGCTCACCTATAAtAAgGTTGAAAACATGACG-CC
Bat_coronavirus_(BtCoV/273/2005) -------ACAGcTGTAAtAACTTCATGCTCACCTATAACAAAGTTGAAAACATGACG-CC
BtRf-BetaCoV/HeB2013 -------ACAGcTGTAAtAACTTCATGCTCACCTATAACAAAGTTGAAAACATGACG-CC
SARS_CORONAVIRUS CAGtagcagTGaCaatatTGctTTGctTGTAcaGtAAGtgAcAacagatgtttcatctcg
Severe_acute_respiratory_syndrom CcGtGAcCTTGGtG--CtTGTATTGACTGTAgTGCgcGtCATA-----------------
SARS_coronavirus_civet007 CAGAGATCTTGGCG--CATGTATTGACTGTAATGCAAGGCATA-----------------
SARS_coronavirus_GZ50 CAGAGATCTTGGCG--CATGTATTGACTGTAATGCAAGGCATA-----------------
SARS_coronavirus_Taiwan_TC1 CAGAGATCTTGGCG--CATGTATTGACTGTAATGCAAGGCATA-----------------
Bat_coronavirus_(BtCoV/273/2005) CAGAGATCTTGGtG--CATGTATTGAtTGTAATGCAAGGCATA-----------------
BtRf-BetaCoV/HeB2013 CAGAGATCTTGGtG--CATGTATTGAtTGTAATGCAAGGCAcA-----------------
SARS_CORONAVIRUS TTgActttCAgGttactaTAGCAgAgAtaTtACtaattattatgaggacttttAAaGTTT
Severe_acute_respiratory_syndrom TTAATGCgCAgG------TAGCAAAAA-GTCAC--------------------AAcaTTg
SARS_coronavirus_civet007 TcAATGCCCAAG------TAGCAAAAA-GTCAC--------------------AATGTTT
SARS_coronavirus_GZ50 TcAATGCCCAAG------TAGCAAAAA-GTCAC--------------------AATGTTT
SARS_coronavirus_Taiwan_TC1 TcAATGCCCAAG------TAGCAAAAA-GTCAC--------------------AATGTTT
Bat_coronavirus_(BtCoV/273/2005) TTAATGCCCAAG------TAGCAAAAA-GTCAC--------------------AATGTcT
BtRf-BetaCoV/HeB2013 TTAATGCCCAAG------TAGCAAAAA-GTCAC--------------------AATGTcT
SARS_CORONAVIRUS C---CATtTGGAATcttgattacaTcAtAaACctCATaattaaaaaTTTATCTaAgtcac
Severe_acute_respiratory_syndrom CttTgATaTGGAAc---------GTtAAAGAtTtCATGTC------aTTgTCTGAA----
SARS_coronavirus_civet007 CACTCATCTGGAAT---------GTAAAAGACTACATGTC------TTTATCTGAA----
SARS_coronavirus_GZ50 CACTCATCTGGAAT---------GTAAAAGACTACATGTC------TTTATCTGAA----
SARS_coronavirus_Taiwan_TC1 CACTCATCTGGAAT---------GTAAAAGACTACATGTC------TTTATCTGAA----
Bat_coronavirus_(BtCoV/273/2005) CgCTCATCTGGAAc---------GTcAAAGACTAtATGTC------aTTgTCTGAA----
BtRf-BetaCoV/HeB2013 CgCTCATCTGGAAc---------GTcAAAGACTAtATGTC------aTTgTCTGAA----
SARS_CORONAVIRUS tAaCTGaGaAtAaAtATTCtcAaTtag---AtGAAGAgCAACcaatggAgAttgaTTAaA
Severe_acute_respiratory_syndrom CAaCTaCGaAAACAAATaCGTAGTGCTGCtAAaAAGAAtAAC------tTACCTTTTAag
SARS_coronavirus_civet007 CAGCTGCGTAAACAAATTCGTAGTGCTGCCAAGAAGAACAAC------ATACCTTTTAGA
SARS_coronavirus_GZ50 CAGCTGCGTAAACAAATTCGTAGTGCTGCCAAGAAGAACAAC------ATACCTTTTAGA
SARS_coronavirus_Taiwan_TC1 CAGCTGCGTAAACAAATTCGTAGTGCTGCCAAGAAGAACAAC------ATACCTTTTAGA
Bat_coronavirus_(BtCoV/273/2005) CAGtTGCGcAAgCAAATTCGTAGTGCTGCtAAaAAGAACAAC------ATACCcTTTAGg
BtRf-BetaCoV/HeB2013 CAGtTGCGcAAgCAAATTCGTAGTGCTGCtAAaAAGAACAAC------ATACCcTTTAGg
SARS_CORONAVIRUS CgAACaTGaaaattattcttttcttggcacTGaTAacACTcG-CtAcTTGTgAgctTtAT
Severe_acute_respiratory_syndrom tTgACaTG----------------------TGCaACtACTAGACAAGTTGTtAATGTtgT
SARS_coronavirus_civet007 CTAACTTG----------------------TGCTACAACTAGACAgGTTGTCAATGTCAT
SARS_coronavirus_GZ50 CTAACTTG----------------------TGCTACAACTAGACAgGTTGTCAATGTCAT
SARS_coronavirus_Taiwan_TC1 CTAACTTG----------------------TGCTACAACTAGACAgGTTGTCAATGTCAT
Bat_coronavirus_(BtCoV/273/2005) CTcACTTG----------------------TGCTACtACTAGgCAAGTTtTaAAcGTCAT
BtRf-BetaCoV/HeB2013 CTcACTTG----------------------TGCTACtACTAGgCAAGTTGTCAAcGTCAT
SARS_CORONAVIRUS cACTACcAAg----------AGtGTGtTAgaggTacaacAGTACTT--------------
Severe_acute_respiratory_syndrom AACaACaAAgATagCACTtAAGGGTGGTAAaATTGT--TAaTAaTTGGTTgAAgCagtTa
SARS_coronavirus_civet007 AACTACTAAAATCTCACTCAAGGGTGGTAAGATTGT--TAGTACTTGGTTTAAACTTATG
SARS_coronavirus_GZ50 AACTACTAAAATCTCACTCAAGGGTGGTAAGATTGT--TAGTACTTGtTTTAAACTTATG
SARS_coronavirus_Taiwan_TC1 AACTACTAAAATCTCACTCAAGGGTGGTAAGATTGT--TAGTACTTGtTTTAAACTTATG
Bat_coronavirus_(BtCoV/273/2005) AACTACTAAAATtTCACTCAAGGGTGGTAAGgTTGT--TAGTACTTGGTTTAAAtTTATG
BtRf-BetaCoV/HeB2013 AACTACTAAAATtTCACTCAAGGGTGGTAAGgTTGT--TAGTACTTGGTTTAAAtTTgTG
SARS_CORONAVIRUS -TTAAAagaACcTT-------GcTCTTctgGaATctaTTTaaTA-------AcaCCtGTt
Severe_acute_respiratory_syndrom aTTAAAGttACAcTtgTGTtCcTTtTTGtTGCtgctaTTTtcTAttTaATaAcaCCtGTt
SARS_coronavirus_civet007 CTTAAgGCCACATTATTGTGCGTTCTTGCTGCATTGGTTTGTTACATCgTTATGCCAGTA
SARS_coronavirus_GZ50 CTTAAgGCCACATTATTGTGCGTTCTTGCTGCATTGGTTTGTTAtATCgTTATGCCAGTA
SARS_coronavirus_Taiwan_TC1 CTTAAgGCCACATTATTGTGCGTTCTTGCTGCATTGGTTTGTTAtATCgTTATGCCAGTA
Bat_coronavirus_(BtCoV/273/2005) CTgAAAGtCACAcTtTTGTGtGTTCTatCTGCATTatTcTGTTACATCATTATGCCAGTA
BtRf-BetaCoV/HeB2013 CTgAAAGtCACAcTtTTGTGtGTTCTatCTGCATTatTcTGTTACATCATTATGCCAGTA
SARS_CORONAVIRUS CATgtcaTGTCTAaaCATacTGacTtTtCAAgTGAAATCATaGGATACAAgGCTATTgAt
Severe_acute_respiratory_syndrom CATgtcaTGTCTAaaCATacTGacTtTtCAAgTGAAATCATaGGATACAAgGCTATTgAt
SARS_coronavirus_civet007 CATACATTGTCaATCCATGATGGTTAcACAAATGAAATCATTGGtTACAAAGCcATTCAG
SARS_coronavirus_GZ50 CATACATTGTCaATCCATGATGGTTAcACAAATGAAATCATTGGtTACAAAGCcATTCAG
SARS_coronavirus_Taiwan_TC1 CATACATTGTCaATCCATGATGGTTAcACAAATGAAATCATTGGtTACAAAGCcATTCAG
Bat_coronavirus_(BtCoV/273/2005) CActCATTGTCTgTtCATGATGGTTATACAAATGAAATCATTGGATACAAAGCTATcCAG
BtRf-BetaCoV/HeB2013 CActCATTGTCTgTtCATGATGGcTATACAAATGAAATCATTGGATACAAAGCTATcCAG
SARS_CORONAVIRUS GgTGGTGTCACTCGTGACATAGcaTCTACaGATacTTGTTTTGCtAACAAACATGCTGaT
Severe_acute_respiratory_syndrom GgTGGTGTCACTCGTGACATAGcaTCTACaGATacTTGTTTTGCtAACAAACATGCTGaT
SARS_coronavirus_civet007 GATGGTGTCACTCGTGACATcaTTTCTACTGATGATTGTTTTGCAAAtAAACATGCTGGT
SARS_coronavirus_GZ50 GATGGTGTCACTCGTGACATcaTTTCTACTGATGATTGTTTTGCAAAtAAACATGCTGGT
SARS_coronavirus_Taiwan_TC1 GATGGTGTCACTCGTGACATcaTTTCTACTGATGATTGTTTTGCAAAtAAACATGCTGGT
Bat_coronavirus_(BtCoV/273/2005) GAcGGTGTCACTCGTGACATAGTgTCTACTGATGATTGTTTTGCAAACAAACATGCTGGT
BtRf-BetaCoV/HeB2013 GAcGGTGTCACTCGTGACATAGTgTCTACTGATGATTGTTTTGCAAACAAACATGCTGGT
SARS_CORONAVIRUS TTTGACaCATGGTTTAGCCAGCGTGGTGGTagTTATActAATGACAAAgctTGCCCatTg
Severe_acute_respiratory_syndrom TTTGACaCATGGTTTAGCCAGCGTGGTGGTagTTATActAATGACAAAgctTGCCCatTg
SARS_coronavirus_civet007 TTTGACGCATGGTTTAGCCAGCGTGGTGGTTCaTAcAAAAATGACAAAAGCTGCCCTGTA
SARS_coronavirus_GZ50 TTTGACGCATGGTTTAGCCAGCGTGGTGGTTCaTAcAAAAATGACAAAAGCTGCCCTGTA
SARS_coronavirus_Taiwan_TC1 TTTGACGCATGGTTTAGCCAGCGTGGTGGTTCaTAcAAAAATGACAAAAGCTGCCCTGTA
Bat_coronavirus_(BtCoV/273/2005) TTcGACtCtTGGTTTAGCCAGCGTGGTGGTTCTTATAggAATGAtAAgAGCTGCCCTGTt
BtRf-BetaCoV/HeB2013 TTcGACtCtTGGTTTAGCCAGCGTGGTGGTTCTTATAggAATGAtAAgAGCTGCCCTGTt
SARS_CORONAVIRUS aTtGCTGCagTCATaACAAGAGAagTgGGTTTtgTCGTGCCTGGtTTgCCTGGcACgaTa
Severe_acute_respiratory_syndrom aTtGCTGCagTCATaACAAGAGAagTgGGTTTtgTCGTGCCTGGtTTgCCTGGcACgaTa
SARS_coronavirus_civet007 GTAGCTGCTATCATTACAAGAGAGATTGGTTTCATaGTGCCTGGCTTACCgGGTACTGTG
SARS_coronavirus_GZ50 GTAGCTGCTATCATTACAAGAGAGATTGGTTTCATaGTGCCTGGCTTACCgGGTACTGTG
SARS_coronavirus_Taiwan_TC1 GTAGCTGCTATCATTACAAGAGAGATTGGTTTCATaGTGCCTGGCTTACCgGGTACTGTG
Bat_coronavirus_(BtCoV/273/2005) GTAGCTGCcATCATTACtAGgGAGATTGGTTTCATCGTGCCTGGaTTACCTGGTACTGTG
BtRf-BetaCoV/HeB2013 GTAGCTGCcATCATTACtAGgGAGATTGGcTTCATCGTGCCTGGaTTACCTGGTACTGTG
SARS_CORONAVIRUS TTAcGcACAAcTAATGGTGACTTTTTGCATTTctTACCTaGaGTTTTTAGTGCaGTTGGt
Severe_acute_respiratory_syndrom TTAcGcACAAcTAATGGTGACTTTTTGCATTTctTACCTaGaGTTTTTAGTGCaGTTGGt
SARS_coronavirus_civet007 cTgAGAgCAATcAATGGTGACTTcTTGCATTTTCTACCTCGTGTTTTTAGTGCTGTTGGC
SARS_coronavirus_GZ50 cTgAGAgCAATcAATGGTGACTTcTTGCATTTTCTACCTCGTGTTTTTAGTGCTGTTGGC
SARS_coronavirus_Taiwan_TC1 cTgAGAgCAATcAATGGTGACTTcTTGCATTTTCTACCTCGTGTTTTTAGTGCTGTTGGC
Bat_coronavirus_(BtCoV/273/2005) TTAAGAACAATTAATGGTGACTTTTTGCATTTTCTACCTCGcGTTTTTAGTGCcGTTGGC
BtRf-BetaCoV/HeB2013 TTAAGAACAATTAATGGTGACTTTTTGCATTTTCTACCTCGcGTTTTTAGTGCcGTTGGC
SARS_CORONAVIRUS AACATcTGtTACACACCATCAAAACTTATaGAGTAcAcTGAcTTTGCaACaTCaGCTTGt
Severe_acute_respiratory_syndrom AACATcTGtTACACACCATCAAAACTTATaGAGTAcAcTGAcTTTGCaACaTCaGCTTGt
SARS_coronavirus_civet007 AACATTTGCTACACACCtTCcAAACTcATTGAGTATAGTGATTTTGCTACCTCTGCTTGC
SARS_coronavirus_GZ50 AACATTTGCTACACACCtTCcAAACTcATTGAGTATAGTGATTTTGCTACCTCTGCTTGC
SARS_coronavirus_Taiwan_TC1 AACATTTGCTACACACCtTCcAAACTcATTGAGTATAGTGATTTTGCTACCTCTGCTTGC
Bat_coronavirus_(BtCoV/273/2005) AACATTTGCTACACACCATCAAAACTTATTGAGTATAGTGATTTTGCTACtTCTGCTTGC
BtRf-BetaCoV/HeB2013 AACATTTGCTACACACCATCAAAACTTATTGAGTATAGTGATTTTGCTACtTCTGCTTGC
SARS_CORONAVIRUS GTTTTGGCTGCTGAATGTACAATTTTTAAaGATGCTtctGGTAAgCCaGTaCCATATTGT
Severe_acute_respiratory_syndrom GTTTTGGCTGCTGAATGTACAATTTTTAAaGATGCTtctGGTAAgCCaGTaCCATATTGT
SARS_coronavirus_civet007 GTTcTtGCTGCTGAgTGTACAATTTTTAAGGATGCTATGGGcAAACCTGTGCCATATTGT
SARS_coronavirus_GZ50 GTTcTtGCTGCTGAgTGTACAATTTTTAAGGATGCTATGGGcAAACCTGTGCCATATTGT
SARS_coronavirus_Taiwan_TC1 GTTcTtGCTGCTGAgTGTACAATTTTTAAGGATGCTATGGGcAAACCTGTGCCATATTGT
Bat_coronavirus_(BtCoV/273/2005) GTcTTGGCTGCgGAATGTACcATTTTTAAGGATGCTATGGGTAAACCTGTGCCATATTGT
BtRf-BetaCoV/HeB2013 GTcTTGGCTGCgGAATGTACcATTTTTAAGGATGCTATGGGTAAgCCTGTGCCATATTGT
SARS_CORONAVIRUS TATGAtACcAATgTACTAGAaGGTTCTgTTgCTTATgaaagttTaCGcCCTGACACaCGT
Severe_acute_respiratory_syndrom TATGAtACcAATgTACTAGAaGGTTCTgTTgCTTATgaaagttTaCGcCCTGACACaCGT
SARS_coronavirus_civet007 TATGACACTAATTTgCTAGAGGGTTCTATTTCTTATAGTGAGCTTCGTCCaGACACTCGT
SARS_coronavirus_GZ50 TATGACACTAATTTgCTAGAGGGTTCTATTTCTTATAGTGAGCTTCGTCCaGACACTCGT
SARS_coronavirus_Taiwan_TC1 TATGACACTAATTTgCTAGAGGGTTCTATTTCTTATAGTGAGCTTCGTCCaGACACTCGT
Bat_coronavirus_(BtCoV/273/2005) TATGACACTAAcTTACTAGAGGGTTCTATTTCTTAcAGTGAGCTgCGTCCTGACACTCGT
BtRf-BetaCoV/HeB2013 TATGACACTAAcTTACTAGAGGGTTCTATTTCTTAcAGTGAGCTgCGTCCTGACACTCGT
SARS_CORONAVIRUS TATGTGCTcATGGATGGCTCTATtATtCAATTTCCTAACACCTACCTtGAAGGTTCTGTT
Severe_acute_respiratory_syndrom TATGTGCTcATGGATGGCTCTATtATtCAATTTCCTAACACCTACCTtGAAGGTTCTGTT
SARS_coronavirus_civet007 TATGTGCTTATGGATGGtTCcATCATACAgTTTCCTAACACtTACCTGGAgGGTTCTGTT
SARS_coronavirus_GZ50 TATGTGCTTATGGATGGtTCcATCATACAgTTTCCTAACAttTACCTGGAgGGTTCTGTT
SARS_coronavirus_Taiwan_TC1 TATGTGCTTATGGATGGtTCcATCATACAgTTTCCTAACACtTACCTGGAgGGTTCTGTT
Bat_coronavirus_(BtCoV/273/2005) TATGTGCTTATGGATGGCTCTATCATACAATTcCCTAACACCTACCTaGAAGGTTCTGTT
BtRf-BetaCoV/HeB2013 TATGTGCTTATGGATGGCTCTATCATACAATTcCCTAACACCTACCTaGAAGGTTCTGTT
SARS_CORONAVIRUS AGAGTGGTAACAACTTTTGATtCTGAGTACTGTAGgCAcGGCACtTGTGAAAGaTCAGAA
Severe_acute_respiratory_syndrom AGAGTGGTAACAACTTTTGATtCTGAGTACTGTAGgCAcGGCACtTGTGAAAGaTCAGAA
SARS_coronavirus_civet007 AGAGTaGTAACAACTTTTGATGCTGAGTACTGTAGACATGGtACATGcGAAAGGTCAGAA
SARS_coronavirus_GZ50 AGAGTaGTAACAACTTTTGATGCTGAGTACTGTAGACATGGtACATGcGAAAGGTCAGAA
SARS_coronavirus_Taiwan_TC1 AGAGTaGTAACAACTTTTGATGCTGAGTACTGTAGACATGGtACATGcGAAAGGTCAGAA
Bat_coronavirus_(BtCoV/273/2005) AGAGTGGTtACAACTTTTGATGCaGAaTACTGccGtCATGGCACATGTGAgAGGTCAGAA
BtRf-BetaCoV/HeB2013 AGAGTGGTtACAACTTTTGATGCaGAGTACTGccGtCATGGCACATGTGAgAGGTCAGAA
SARS_CORONAVIRUS GCTGGTgTTTGtgTATCTACTAGTGGTAGATGGGTaCTTAAcAATGAttATTACAGAtCT
Severe_acute_respiratory_syndrom GCTGGTgTTTGtgTATCTACTAGTGGTAGATGGGTaCTTAAcAATGAttATTACAGAtCT
SARS_coronavirus_civet007 GCaGGTATTTGCCTATCTACcAGTGGTAGATGGGTTCTTAATAATGAGCATTACAGAGCT
SARS_coronavirus_GZ50 GtaGGTATTTGCCTATCTACcAGTGGTAGATGGGTTCTTAATAATGAGCATTACAGAGCT
SARS_coronavirus_Taiwan_TC1 GtaGGTATTTGCCTATCTACcAGTGGTAGATGGGTTCTTAATAATGAGCATTACAGAGCT
Bat_coronavirus_(BtCoV/273/2005) GCTGGTATTTGCCTgTCTACTAGTGGTAGATGGGTTCTTAATAATGAaCAcTAtAGgGCT
BtRf-BetaCoV/HeB2013 GCTGGTATTTGCCTgTCTACTAGTGGTAGATGGGTTCTTAATAATGAaCAcTAtAGgGCT
SARS_CORONAVIRUS tTACCAGGAGTTTTCTGTGGTGTaGATGCtgTaAATtTacTTaCTAAtATgTTTACACCa
Severe_acute_respiratory_syndrom tTACCAGGAGTTTTCTGTGGTGTaGATGCtgTaAATtTacTTaCTAAtATgTTTACACCa
SARS_coronavirus_civet007 CTAtCAGGAGTTTTCTGTGGTGTTGATGCgATGAATCTCATaGCTAACATCTTTACtCCT
SARS_coronavirus_GZ50 CTAtCAGGAGTTTTCTGTGGTGTTGATGCgATGAATCTCATaGCTAACATCTTTACtCCT
SARS_coronavirus_Taiwan_TC1 CTAtCAGGAGTTTTCTGTGGTGTTGATGCgATGAATCTCATaGCTAACATCTTTACtCCT
Bat_coronavirus_(BtCoV/273/2005) tTgCCAGGAGTcTTtTGTGGTGTTGATGCcATGAATCTtATTGCTAACATCTTcACACCT
BtRf-BetaCoV/HeB2013 CTgCCAGGAGTcTTtTGTGGTGTTGATGCcATGAATCTtATTGCTAACATCTTcACACCT
SARS_CORONAVIRUS CTaaTTCAACCTaTTGGTGCTTTgGAcaTATCaGCaTCTaTAGTaGCTGGTGGTATTgTa
Severe_acute_respiratory_syndrom CTaaTTCAACCTaTTGGTGCTTTgGAcaTATCaGCaTCTaTAGTaGCTGGTGGTATTgTa
SARS_coronavirus_civet007 CTTGTgCAACCTGTgGGTGCTTTAGATGTgTCTGCTTCaGcAGTGGCTGGTGGTATTATT
SARS_coronavirus_GZ50 CTTGTgCAACCTGTgGGTGCTTTAGATGTgTCTGCTTCaGTAGTGGCTGGTGGTATTATT
SARS_coronavirus_Taiwan_TC1 CTTGTgCAACCTGTgGGTGCTTTAGATGTgTCTGCTTCaGTAGTGGCTGGTGGTATTATT
Bat_coronavirus_(BtCoV/273/2005) CTTGTTCAACCTGTTGGTGCTTTAGATGTATCTGCTTCTGTAGTGGCgGGTGGTATTATT
BtRf-BetaCoV/HeB2013 CTTGTTCAACCTGTTGGTGCTTTAGATGTATCTGCTTCTGTAGTGGCgGGTGGTATTATT
SARS_CORONAVIRUS GCtATcgTaGTaACaTGcctTGCCTACTAtTTTATGAggTTtAGAaGaGCTTTTGGTGAa
Severe_acute_respiratory_syndrom GCtATcgTaGTaACaTGcctTGCCTACTAtTTTATGAggTTtAGAaGaGCTTTTGGTGAa
SARS_coronavirus_civet007 GCCATATTGGTGACTTGTGCTGCCTACTACTTTATGAAATTCAGACGTGCTTTTGGTGAG
SARS_coronavirus_GZ50 GCCATATTGGTGACTTGTGCTGCCTACTACTTTATGAAATTCAGACGTGtTTTTGGTGAG
SARS_coronavirus_Taiwan_TC1 GCCATATTGGTGACTTGTGCTGCCTACTACTTTATGAAATTCAGACGTGtTTTTGGTGAG
Bat_coronavirus_(BtCoV/273/2005) GCCATATTGGTGACTTGTGCTGCtTACTACTTTATGAAATTCAGgCGTGCaTTTGGTGAG
BtRf-BetaCoV/HeB2013 GCCATATTGGTGACTTGTGCTGCtTACTACTTTATGAAATTCAGgCGTGCaTTTGGTGAG
SARS_CORONAVIRUS TACAgtCATGTaGTTGCcttTAATaCtTTACTaTTccTtATGTCaTTCACTgTACTCTGT
Severe_acute_respiratory_syndrom TACAgtCATGTaGTTGCcttTAATaCtTTACTaTTccTtATGTCaTTCACTgTACTCTGT
SARS_coronavirus_civet007 TACAACCATGTTGTTGCTGCTAATGCAcTttTGTTTTTGATGTCTTTCACTATACTCTGT
SARS_coronavirus_GZ50 TACAACCATGTTGTTGCTGCTAATGCAcTttTGTTTTTGATGTCTTTCACTATACTCTGT
SARS_coronavirus_Taiwan_TC1 TACAACCATGTTGTTGCTGCTAATGCAcTttTGTTTTTGATGTCTTTCACTATACTCTGT
Bat_coronavirus_(BtCoV/273/2005) TACAACCATGTTGTaGCTGCTAATGCATTACTGTTTTTGATGTCTTTCACTATACTCTGT
BtRf-BetaCoV/HeB2013 TACAACCATGTTGTaGCTGCTAATGCATTACTGTTTTTGATGTCTTTCACTATACTCTGT
SARS_CORONAVIRUS TTaaCACCAGtTTACtcaTTcTTaCCtGGtGTTTATTCTGTtaTTTACTTGTACTTGACA
Severe_acute_respiratory_syndrom TTaaCACCAGtTTACtcaTTcTTaCCtGGtGTTTATTCTGTtaTTTACTTGTACTTGACA
SARS_coronavirus_civet007 cTGGCACCAGCTTACAGCTTTcTGCCGGGAGTcTAcTCaGTCTTTTACTTGTACTTGACA
SARS_coronavirus_GZ50 cTGGtACCAGCTTACAGCTTTcTGCCGGGAGTcTAcTCaGTCTTTTACTTGTACTTGACA
SARS_coronavirus_Taiwan_TC1 cTGGtACCAGCTTACAGCTTTcTGCCGGGAGTcTAcTCaGTCTTTTACTTGTACTTGACA
Bat_coronavirus_(BtCoV/273/2005) TTGGCACCtGCcTAtAGCTTTTTGCCaGGAGTTTATTCTGTCTTTTACTTGTACTTGACA
BtRf-BetaCoV/HeB2013 TTGGCACCtGCcTAtAGtTTTTTGCCaGGAGTTTATTCTGTCTTTTACTTGTACTTGACA
SARS_CORONAVIRUS TTtTATcTTACTAATGATGTTTCtTTTTTAGCaCAtaaaaAAaGaacaaaGaccatTgaG
Severe_acute_respiratory_syndrom TTtTATcTTACTAATGATGTTTCtTTTTTAGCaCAtaTTCAgTG------GaTgGtTATG
SARS_coronavirus_civet007 TTCTATTTcACcAATGATGTTTCATTcTTgGCTCACCTTCAATG------GTTTGCcATG
SARS_coronavirus_GZ50 TTCTATTTcACcAATGATGTTTCATTcTTgGCTCACCTTCAATG------GTTTGCcATG
SARS_coronavirus_Taiwan_TC1 TTCTATTTcACcAATGATGTTTCATTcTTgGCTCACCTTCAATG------GTTTGCcATG
Bat_coronavirus_(BtCoV/273/2005) TTCTATTTTACTAATGATGTTTCATTTTTAGCTCACCTTCAATG------GTTTGCTATG
BtRf-BetaCoV/HeB2013 TTCTATTTTACTAATGATGTTTCATTTTTAGCTCACCTTCAATG------GTTTGCTATG
SARS_CORONAVIRUS TacTCTggactaaaaCtaAaaGTGaagtcaaaaTTgTGagTAACAaCcAgTggTgTGTAc
Severe_acute_respiratory_syndrom TTcaCa---------CCTtTaGTaCCT------TTCTGGATAACAattgcT--TATaTca
SARS_coronavirus_civet007 TTTTCT---------CCTATTGTGCCT------TTtTGGATAACAGCAATT--TATGTAT
SARS_coronavirus_GZ50 TTTTCT---------CCTATTGTGCCT------TTtTGGATAACAGCAATc--TATGTAT
SARS_coronavirus_Taiwan_TC1 TTTTCT---------CCTATTGTGCCT------TTtTGGATAACAGCAATc--TATGTAT
Bat_coronavirus_(BtCoV/273/2005) TTTTCT---------CCcATTGTGCCT------TTCTGGATAACAGCcATT--TATGTgT
BtRf-BetaCoV/HeB2013 TTTTCT---------CCcATTGTGCCT------TTCTGGATAACAGCcATT--TATGTgT
SARS_CORONAVIRUS cCTtgATTgtTCTt-ttCACTGCaCtTTGGaaagtaacacctgagcaTTgTcTAACAACa
Severe_acute_respiratory_syndrom TtTGTATTTCcacaAAGCAtTtC-tATTGG-----------------TTCTTTAgtAAtT
SARS_coronavirus_civet007 TCTGTATTTCTCTGAAGCACTGC-CATTGG-----------------TTCTTTAACAACT
SARS_coronavirus_GZ50 TCTGTATTTCTCTGAAGCACTGC-CATTGG-----------------TTCTTTAACAACT
SARS_coronavirus_Taiwan_TC1 TCTGTATTTCTCTGAAGCACTGC-CATTGG-----------------TTCTTTAACAACT
Bat_coronavirus_(BtCoV/273/2005) TCTGcATcTCctTGAAGCACTGC-CAcTGG-----------------TTCTTTAAtAACT
BtRf-BetaCoV/HeB2013 TCTGcATcTCctTGAAGCACTGC-CAcTGG-----------------TTCTTTAAtAACT
SARS_CORONAVIRUS tCaaaAGGtGtAaAtTCATcTTcTAATaaAGcacTACccaATaTgGTACgTcCattcAta
Severe_acute_respiratory_syndrom ACCTaAaGAGAcGtGTagTcTT-TAATGGtG--TTtC---cTTTAGTACtTTtGAaGAaG
SARS_coronavirus_civet007 AtCTTAGGAaAAGAGTCATGTT-TAATGGAG--TTAC---ATTTAGTACCTTCGAGGAGG
SARS_coronavirus_GZ50 AtCTTAGGAaAAGAGTCATGTT-TAATGGAG--TTAC---ATTTAGTACCTTCGAGGAGG
SARS_coronavirus_Taiwan_TC1 AtCTTAGGAaAAGAGTCATGTT-TAATGGAG--TTAC---ATTTAGTACCTTCGAGGAGG
Bat_coronavirus_(BtCoV/273/2005) ACCTTAaGAGAAGAGTCATGTT-TAATGGAG--TTAC---ATTTAGcACCTTtGAGGAGG
BtRf-BetaCoV/HeB2013 ACCTTAaGAGAAGAGTCATGTT-TAATGGAG--TTAC---ATTTAGcACCTTtGAGGAGG
SARS_CORONAVIRUS CcatTTTGcaGTAatTcTTT--TaAtgAAGcAcAcaTAtCTAAAAcggcaattccagtTT
Severe_acute_respiratory_syndrom CTGCgcTGT-GcACCTTTTTGtTaAAtAAaGAAATGTAtCTAAAg-------------TT
SARS_coronavirus_civet007 CTGCTTTGT-GTACCTTTTTGCTCAACAAGGAAATGTACCTAAAA-------------TT
SARS_coronavirus_GZ50 CTGCTTTGT-GTACCTTTTTGCTCAACAAGGAAATGTACCTAAAA-------------TT
SARS_coronavirus_Taiwan_TC1 CTGCTTTGT-GTACCTTTTTGCTCAACAAGGAAATGTACCTAAAA-------------TT
Bat_coronavirus_(BtCoV/273/2005) CTGCTTTaT-GTACCTTTTTaCTtAACAAGGAAATGTACCTcAAA-------------TT
BtRf-BetaCoV/HeB2013 CTGCTTTaT-GTACCTTTTTaCTtAACAAGGAAATGTACCTcAAA-------------TT
SARS_CORONAVIRUS GaGcAGaaAGAggtcCTaGtatgTcA-ACAtggtcttGTgTtAgAGGTtCataaTTGtaC
Severe_acute_respiratory_syndrom GCGTAGtGAtgtgCTaTTaCCtCTTACgCA-------aTATAAtAGaTAC---tTaGCTC
SARS_coronavirus_civet007 GCGTAGCGAGACACTgTTGCCACTTACACA-------GTATAACAGGTAt---CTTGCTC
SARS_coronavirus_GZ50 GCGTAGCGAGACACTgTTGCCACTTACACA-------GTATAACAGGTAt---CTTGCTC
SARS_coronavirus_Taiwan_TC1 GCGTAGCGAGACACTgTTGCCACTTACACA-------GTATAACAGGTAt---CTTGCTC
Bat_coronavirus_(BtCoV/273/2005) GCGTAGtGAGACACTCTTGCCACTTACACA-------GTAcAACAGGTAC---CTTGCTC
BtRf-BetaCoV/HeB2013 GCGTAGtGAGACACTCTTGCCACTTACACA-------GTAcAACAGGTAC---CTTGCTC
SARS_CORONAVIRUS TtcATAgCcacaAgGTtaAAGTcaTTaAGaGttGtggTAaAT--------CgATtGaGAA
Severe_acute_respiratory_syndrom TtTATAAt----AAGTACAAGTATTTtAGTGGAGCaaTgGATACAACtAGCTAcaGaGAA
SARS_coronavirus_civet007 TATATAAC----AAGTACAAGTATTTCAGTGGAGCCTTAGATACtACCAGCTATCGTGAA
SARS_coronavirus_GZ50 TATATAAC----AAGTACAAGTATTTCAGTGGAGCCTTAGATACtACCAGCTATCGTGAA
SARS_coronavirus_Taiwan_TC1 TATATAAC----AAGTACAAGTATTTCAGTGGAGCCTTAGATACtACCAGCTATCGTGAA
Bat_coronavirus_(BtCoV/273/2005) TcTATAAC----AAGTACAAGTATTTCAGTGGgGCCTTgGAcACAACCAGCTATCGTGAA
BtRf-BetaCoV/HeB2013 TcTATAAt----AAGTACAAGTATTTCAGTGGgGCCTTgGAcACAACCAGtTATCGTGAA
SARS_CORONAVIRUS aCcaCcTGtctCCAtTTAtaacagcagcgtaCAAccaagCTAAAacatTaACTgTAaTAg
Severe_acute_respiratory_syndrom GCtGCTTGtTGtCAtcTc------------GCAAAGGCTCTcAA----TGACTTcAGTAA
SARS_coronavirus_civet007 GCAGCTTGCTGCCACTTA------------GCAAAGGCTCTAAA----TGACTTTAGcAA
SARS_coronavirus_GZ50 GCAGCTTGCTGCCACTTA------------GCAAAGGCTCTAAA----TGACTTTAGcAA
SARS_coronavirus_Taiwan_TC1 GCAGCTTGCTGCCACTTA------------GCAAAGGCTCTAAA----TGACTTTAGcAA
Bat_coronavirus_(BtCoV/273/2005) GCAGCTTGCTGCCACTTA------------GCAAAGGCTCTtAA----TGACTTcAGTAA
BtRf-BetaCoV/HeB2013 GCAGCTTGCTGCCACTTA------------GCAAAGGCTCTtAA----TGACTTcAGTAA
SARS_CORONAVIRUS tTgtgtccgtacCAGcTGCTtgTGcTgTtTgCCtgtCAaCA-AAAggTCcATaAaagtta
Severe_acute_respiratory_syndrom CT----------CAGGTtCTGATGTTCTtTACCAACCACCACAAACcTCtATCA------
SARS_coronavirus_civet007 CT----------CAGGTGCTGATGTTCTCTACCAACCACCACAgACATCAATCA------
SARS_coronavirus_GZ50 CT----------CAGGTGCTGATGTTCTCTACCAACCACCACAgACATCAATCA------
SARS_coronavirus_Taiwan_TC1 CT----------CAGGTGCTGATGTTCTCTACCAACCACCACAgACATCAATCA------
Bat_coronavirus_(BtCoV/273/2005) CT----------CcGGTGCTGATGTcCTCTACCAACCACCACAAACtTCAATCA------
BtRf-BetaCoV/HeB2013 CT----------CcGGTGCTGAcGTcCTCTACCAACCACCACAAACtTCAATCA------
SARS_CORONAVIRUS cCTTCTaagtcTgTGcCAGcaTGaacTc---cAgtTGGtAaTtCCaT-------------
Severe_acute_respiratory_syndrom -CcTCaGCTGTTtTG-CAGAGTGGTTTTAGAAAAATGGCATTCCCaTCtGGtAAAGTTGA
SARS_coronavirus_civet007 -CTTCTGCTGTTCTG-CAGAGTGGTTTTAGgAAAATGGCATTCCCGTCAGGCAAAGTTGA
SARS_coronavirus_GZ50 -CTTCTGCTGTTCTG-CAGAGTGGTTTTAGgAAAATGGCATTCCCGTCAGGCAAAGTTGA
SARS_coronavirus_Taiwan_TC1 -CTTCTGCTGTTCTG-CAGAGTGGTTTTAGgAAAATGGCATTCCCGTCAGGCAAAGTTGA
Bat_coronavirus_(BtCoV/273/2005) -CaTCTGCaGTTtTG-CAGAGTGGTTTTAGAAAAATGGCATTCCCGTCtGGtAAAGTTGA
BtRf-BetaCoV/HeB2013 -CaTCTGCaGTTtTG-CAGAGTGGTTTTAGAAgAATGGCATTCCCGTCtGGtAAgGTTGA
SARS_CORONAVIRUS -------ATGGTgCAtGTAACaaaaaGAgaCACAg-TCaTAAT---cTaTGtTaAaA---
Severe_acute_respiratory_syndrom gGGtTGtATGGTACAAGTAACtTGTGGtACaACtACaCTTAAcGGtcTtTGGcTtGATGA
SARS_coronavirus_civet007 AGGGTGCATGGTACAAGTAACCTGTGGAACtACAACTCTTAATGGATTGTGGTTgGATGA
SARS_coronavirus_GZ50 AGGGTGCATGGTACAAGTAACCTGTGGAACtACAACTCTTAATGGATTGTGGTTgGATGA
SARS_coronavirus_Taiwan_TC1 AGGGTGCATGGTACAAGTAACCTGTGGAACtACAACTCTTAATGGATTGTGGTTgGATGA
Bat_coronavirus_(BtCoV/273/2005) AGGGTGCATGGTtCAAGTcACtTGTGGAACCACAACTCTTAAcGGATTGTGGTTAGATGA
BtRf-BetaCoV/HeB2013 AGGGTGCATGGTtCAAGTtACtTGTGGAACCACAACTCTTAAcGGATTGTGGTTAGATGA
SARS_CORONAVIRUS -------------CCAAcAC-TacCAcaTGaACcattaAgGA-ATG---AAcCCTtAaTA
Severe_acute_respiratory_syndrom CgtAGTtTACTGTCCAAGACATGTgATcTGCACctCtGAAGACATGCTTAAcCCTAAtTA
SARS_coronavirus_civet007 CACAGTATACTGTCCAAGACATGTCATTTGCACAGCAGAAGACATGCTTAATCCTAACTA
SARS_coronavirus_GZ50 CACAGTATACTGTCCAAGACATGTCATTTGCACAGCAGAAGACATGCTTAATCCTAACTA
SARS_coronavirus_Taiwan_TC1 CACAGTATACTGTCCAAGACATGTCATTTGCACAGCAGAAGACATGCTTAATCCTAACTA
Bat_coronavirus_(BtCoV/273/2005) CACAGTATAtTGTCCAAGACATGTtATTTGCACAGCAGAAGACATGCTTAATCCaAACTA
BtRf-BetaCoV/HeB2013 CACAGTATAtTGTCCAAGACATGTtATTTGCACAGCAGAAGACATGCTTAATCCaAACTA
SARS_CORONAVIRUS gtgAaATtgggcctcataGCaCATTgGTAAAcaCcagatggtgAACCATtGt-------a
Severe_acute_respiratory_syndrom TGAAGATtT---------aCTCATTCGTAAgTCt---------AAtCATAatTTCtTgGT
SARS_coronavirus_civet007 TGAAGATCT---------GCTCATTCGcAAATCC---------AACCATAGCTTtCTTGT
SARS_coronavirus_GZ50 TGAAGATCT---------GCTCATTCGcAAATCC---------AACCATAGCTTtCTTGT
SARS_coronavirus_Taiwan_TC1 TGAAGATCT---------GCTCATTCGcAAATCC---------AACCATAGCTTtCTTGT
Bat_coronavirus_(BtCoV/273/2005) TGAAGAcCT---------GCTCATcCGTAAgTCt---------AACCATAGCTTCCTTGT
BtRf-BetaCoV/HeB2013 TGAAGAcCT---------GCTCATcCGTAAgTCt---------AACCATAGCTTCCTTGT
SARS_CORONAVIRUS aCAaGCTaaCAcTGaaaAAgTctGTccTg------gTTgaATGCgAacAAactTaTaCTT
Severe_acute_respiratory_syndrom aCAGGCTGGtAATGTTCAACTcaGgGTTATTGGaCATTCTATGCAA--AATTGTgTaCTT
SARS_coronavirus_civet007 TCAGGCTGGCAATGTTCAACTTCGTGTTATTGGCCATTCTATGCAA--AATTGTCTGCTT
SARS_coronavirus_GZ50 TCAGGCTGGCAATGTTCAACTTCGTGTTATTGGCCATTCTATGCAA--AATTGTCTGCTT
SARS_coronavirus_Taiwan_TC1 TCAGGCTGGCAATGTTCAACTTCGTGTTATTGGCCATTCTATGCAA--AATTGTCTGCTT
Bat_coronavirus_(BtCoV/273/2005) cCAGGCTGGtAATGTcCAACTTCGTGTcATcGGCCATTCcATGCAA--AATTGTCTGCTT
BtRf-BetaCoV/HeB2013 cCAGGCTGGtAATGTcCAACTTCGTGTcATcGGCCATTCcATGCAA--AATTGTCTGCTT
SARS_CORONAVIRUS AGGtgtCTTAggaTTGgctgTatcAACCtTAAG---CttAAGTAcAcAaTTtTgCaTAga
Severe_acute_respiratory_syndrom AaG---CTTAAgGTTGATACagCcAAtCCTAAGACACCtAAGTATAAgTTTGTtCGcA--
SARS_coronavirus_civet007 AGG---CTTAAAGTTGATACTTCTAACCCTAAGACACCCAAGTATAAATTTGTCCGTA--
SARS_coronavirus_GZ50 AGG---CTTAAAGTTGATACTTCTAACCCTAAGACACCCAAGTATAAATTTGTCCGTA--
SARS_coronavirus_Taiwan_TC1 AGG---CTTAAAGTTGATACTTCTAACCCTAAGACACCCAAGTATAAATTTGTCCGTA--
Bat_coronavirus_(BtCoV/273/2005) AGG---CTTAAAGTTGATACcTCTAACCCTAAGACACCaAAGTATAAATTTGTCCGTA--
BtRf-BetaCoV/HeB2013 AGG---CTTAAAGTTGATACcTCTAACCCTAAGACACCaAAGTATAAATTTGTCCGTA--
SARS_CORONAVIRUS atgTCCAAtaaccCtgaGTtgAACATTacCAGcCTgTAcCAaGaaAttATGaTTagaCtT
Severe_acute_respiratory_syndrom ---TtCAA-----CCAGGaCAgACtTTTTCAGTgT-TAGCtTGtTACAATGGTTCACCAT
SARS_coronavirus_civet007 ---TCCAA-----CCtGGTCAAACATTTTCAGTtc-TAGCATGCTACAATGGTTCACCAT
SARS_coronavirus_GZ50 ---TCCAA-----CCtGGTCAAACATTTTCAGTtc-TAGCATGCTACAATGGTTCACCAT
SARS_coronavirus_Taiwan_TC1 ---TCCAA-----CCtGGTCAAACATTTTCAGTtc-TAGCATGCTACAATGGTTCACCAT
Bat_coronavirus_(BtCoV/273/2005) ---TCCAA-----CCAGGTCAgACATTTTCAGTCT-TAGCtTGtTACAATGGTTCACCAT
BtRf-BetaCoV/HeB2013 ---TCCAA-----CCAGGTCAgACATTTTCAGTCT-TAGCtTGtTACAATGGTTCACCAT
SARS_CORONAVIRUS acGaatGaGTaaATC--TtcataATtAGggtTAAgCATgtCtTcAgAGGTgC--------
Severe_acute_respiratory_syndrom CTG---GTGTTTAcCAaTGTGCtATGAGgCCcAATttcACtATTAAgGGTTCaTTCCTTA
SARS_coronavirus_civet007 CTG---GTGTTTATCAGTGTGCCATGAGACCTAATCATACCATTAAAGGTTCTTTCCTTA
SARS_coronavirus_GZ50 CTG---GTGTTTATCAGTGTGCCATGAGACCTAATCATACCATTAAAGGTTCTTTCCTTA
SARS_coronavirus_Taiwan_TC1 CTG---GTGTTTATCAGTGTGCCATGAGACCTAATCATACCATTAAAGGTTCTTTCCTTA
Bat_coronavirus_(BtCoV/273/2005) CaG---GaGTTTAcCAGTGTGCCATGAGACCTAActAcACCATTAAgGGTTCTTTCCTcA
BtRf-BetaCoV/HeB2013 CaG---GaGTcTAcCAGTGTGCCATGAGACCTAActAcACCATTAAgGGTTCTTTCCTcA
SARS_CORONAVIRUS --aGATCAcaTGtcttggacaGTAaacTacGTcaTcAagccaAagAccgTTaaGTGTagT
Severe_acute_respiratory_syndrom ATGGtTCATGTG---------GTAGTGTTGGTTTTAACATaGATTATGAcTGtGTcTCTT
SARS_coronavirus_civet007 ATGGATCATGTG---------GTAGTGTTGGTTTTAACATTGATTATGATTGCGTGTCTT
SARS_coronavirus_GZ50 ATGGATCATGTG---------GTAGTGTTGGTTTTAACATTGATTATGATTGCGTGTCTT
SARS_coronavirus_Taiwan_TC1 ATGGATCATGTG---------GTAGTGTTGGTTTTAACATTGATTATGATTGCGTGTCTT
Bat_coronavirus_(BtCoV/273/2005) ATGGgTCATGTG---------GTAGTGTTGGTTTTAACATTGAcTATGATTGCGTGTCcT
BtRf-BetaCoV/HeB2013 ATGGgTCATGTG---------GTAGTGTTGGTTTTAACATTGAcTATGATTGCGTGTCcT
SARS_CORONAVIRUS TgTaCcAcAagttactTGtAcCATAc--AaCcctCAACtttaccagatgGGAaTgccatt
Severe_acute_respiratory_syndrom TtTGtTAcA-------TGCAcCATATGGAatTaCCAAC----------tGGAGTt-----
SARS_coronavirus_civet007 TCTGCTATA-------TGCATCATATGGAGCTTCCAAC----------AGGAGTA-----
SARS_coronavirus_GZ50 TCTGCTATA-------TGCATCATATGGAGCTTCCAAC----------AGGAGTA-----
SARS_coronavirus_Taiwan_TC1 TCTGCTATA-------TGCATCATATGGAGCTTCCAAC----------AGGAGTA-----
Bat_coronavirus_(BtCoV/273/2005) TtTGCTATA-------TGCATCAcATGGAGCTTCCAAC----------AGGAGTA-----
BtRf-BetaCoV/HeB2013 TtTGCTATA-------TGCATCAcATGGAGCTTCCAAC----------tGGAGTA-----
SARS_CORONAVIRUS tttctaaaacCACtCTGcaaAaCagCTgAGgtGaTAgAggTtTgTGG-----TgGTTGgt
Severe_acute_respiratory_syndrom ----------CAtGCTG-GCACaGACTTAGAAGGTA-AcTTtTATGGaCCtTTTGTTGAC
SARS_coronavirus_civet007 ----------CACGCTG-GtACtGACTTAGAAGGTA-AATTCTATGGTCCATTTGTTGAC
SARS_coronavirus_GZ50 ----------CACGCTG-GtACtGACTTAGAAGGTA-AATTCTATGGTCCATTTGTTGAC
SARS_coronavirus_Taiwan_TC1 ----------CACGCTG-GtACtGACTTAGAAGGTA-AATTCTATGGTCCATTTGTTGAC
Bat_coronavirus_(BtCoV/273/2005) ----------CACGCTG-GCACCGACTTAGAAGGTA-AATTCTATGGTCCcTTTGTTGAC
BtRf-BetaCoV/HeB2013 ----------CACGCTG-GCACCGACTTAGAAGGTA-AATTCTATGGTCCcTTTGTTGAC
SARS_CORONAVIRUS AaA-gAACatCAgAacCTG-AGtTACtGAagt--------CATTgAgaGccTTtGCgaG-
Severe_acute_respiratory_syndrom AGgCAAACaGCACAaGCaGCtGGTACgGACACAACtATtACAgTtAATGTTTTaGCtTGG
SARS_coronavirus_civet007 AGACAAACTGCACAGGCTGCAGGTACAGACACAACCATAACATTAAATGTTTTGGCATGG
SARS_coronavirus_GZ50 AGACAAACTGCACAGGCTGCAGGTACAGACACAACCATAACATTAAATGTTTTGGCATGG
SARS_coronavirus_Taiwan_TC1 AGACAAACTGCACAGGCTGCAGGTACAGACACAACCATAACATTAAATGTTTTGGCATGG
Bat_coronavirus_(BtCoV/273/2005) AGACAAACTGCACAGGCTGCAGGcACAGACACAACCATtACATTgAAcGTTTTGGCtTGG
BtRf-BetaCoV/HeB2013 AGACAAACTGCACAGGCTGCAGGcACAGACACAACCATtACATTgAAcGTTTTGGCtTGG
SARS_CORONAVIRUS -------------------ATGacaAcAaGcaGcTTCTctgTAGctagttgtATcCAttg
Severe_acute_respiratory_syndrom tTGTAcGCTGCTGTTATaAATGGAGAcAGGTGGTTTCTcAATcG--------ATTtACCA
SARS_coronavirus_civet007 CTGTATGCTGCTGTTATCAATGGtGATAGGTGGTTTCTTAATAG--------ATTCACCA
SARS_coronavirus_GZ50 CTGTATGCTGCTGTTATCAATGGtGATAGGTGGTTTCTTAATAG--------ATTCACCA
SARS_coronavirus_Taiwan_TC1 CTGTATGCTGCTGTTATCAATGGtGATAGGTGGTTTCTTAATAG--------ATTCACCA
Bat_coronavirus_(BtCoV/273/2005) CTcTATGCTGCTGTTATtAATGGAGATAGaTGGTTcCTTAATAG--------gTTtACCA
BtRf-BetaCoV/HeB2013 CTcTATGCTGCTGTTATtAATGGAGATAGaTGGTTcCTTAATAG--------gTTtACCA
SARS_CORONAVIRUS CTcCaCTaAAatACTTgtACtT-------ATtAtaaAgAgCTAaGtAtCTaTtAtAttgc
Severe_acute_respiratory_syndrom CaACTCTtAATGACTTTAACCTTGTGGCtATGAAGTACAAtTATGAACCTCTaACACAAG
SARS_coronavirus_civet007 CTACTtTGAATGACTTTAACCTTGTGGCAATGAAGTACAACTATGAACCTtTGACACAAG
SARS_coronavirus_GZ50 CTACTtTGAATGACTTTAACCTTGTGGCAATGAAGTACAACTATGAACCTtTGACACAAG
SARS_coronavirus_Taiwan_TC1 CTACTtTGAATGACTTTAACCTTGTGGCAATGAAGTACAACTATGAACCTtTGACACAAG
Bat_coronavirus_(BtCoV/273/2005) CaACTCTGAATGAtTTTAACCTTGTGGCAATGAAaTACAACTATGAgCCaCTGACACAAG
BtRf-BetaCoV/HeB2013 CaACTCTGAATGAtTTTAAtCTTGTGGCAATGAAaTACAACTATGAgCCaCTGACACAAG
SARS_CORONAVIRUS gTaA----GAggTAaTaGcACaTCacTacGCaactttagatacaTCAAcCAGGcAagtta
Severe_acute_respiratory_syndrom AcCATGTTGACATACTaGGACCTCTTTCTGC-------------TCAAACtGGAATTGCC
SARS_coronavirus_civet007 ATCATGTTGACATAtTGGGACCTCTTTCTGC-------------TCAAACAGGAATTGCC
SARS_coronavirus_GZ50 ATCATGTTGACATAtTGGGACCTCTTTCTGC-------------TCAAACAGGAATTGCC
SARS_coronavirus_Taiwan_TC1 ATCATGTTGACATAtTGGGACCTCTTTCTGC-------------TCAAACAGGAATTGCC
Bat_coronavirus_(BtCoV/273/2005) ATCATGTTGACATACTGGGACCcCTTTCTGC-------------aCAAACAGGAATaGCt
BtRf-BetaCoV/HeB2013 ATCATGTTGACATACTGGGACCTCTTTCTGC-------------aCAAACAGGAATaGCt
SARS_CORONAVIRUS aggTTAGATA---GcaCTctagTGtcAaAtCTaC-aaAcAATGGaATtAgcaGgatatCT
Severe_acute_respiratory_syndrom GTtTTAGATATGTGTGCTtCaTTaAAAGAatTaCTGCAaAATGGTATGAATGGaCGTACc
SARS_coronavirus_civet007 GTCTTAGATATGTGTGCTGCTTTGAAAGAGCTGCTGCAGAATGGTATGAATGGTCGTACT
SARS_coronavirus_GZ50 GTCTTAGATATGTGTGCTGCTTTGAAAGAGCTGCTGCAGAATGGTATGAATGGTCGTACT
SARS_coronavirus_Taiwan_TC1 GTCTTAGATATGTGTGCTGCTTTGAAAGAGCTGCTGCAGAATGGTATGAATGGTCGTACT
Bat_coronavirus_(BtCoV/273/2005) GTCTTAGATATGTGTGCTGCTcTaAAAGAGCTtCTaCAGAATGGTATGAATGGTCGTACT
BtRf-BetaCoV/HeB2013 GTCTTAGATATGTGTGCTGCTcTaAAAGAGCTtCTaCAGAATGGTATGAATGGTCGTACT
SARS_CORONAVIRUS ATC---GacAttgCaATTcc--AAaATagGcaTACACCATctgTGAatTTGTcAGAatgT
Severe_acute_respiratory_syndrom ATatTgGGTAGtgCTtTaTTAGAAGATGAaTTTACACCtTT--TGATGTTGTTAGACAAT
SARS_coronavirus_civet007 ATCCTTGGTAGCACTATTTTAGAAGATGAGTTTACACCATT--TGATGTTGTTAGACAAT
SARS_coronavirus_GZ50 ATCCTTGGTAGCACTATTTTAGAAGATGAGTTTACACCATT--TGATGTTGTTAGACAAT
SARS_coronavirus_Taiwan_TC1 ATCCTTGGTAGCACTATTTTAGAAGATGAGTTTACACCATT--TGATGTTGTTAGACAAT
Bat_coronavirus_(BtCoV/273/2005) ATtCTTGGTAGCACTATTcTAGAAGATGAGTTTACgCCtTT--cGATGTTGTTAGACAAT
BtRf-BetaCoV/HeB2013 ATtCTTGGTAGCACTATTcTAGAAGATGAGTTTACgCCtTT--cGATGTTGTTAGACAAT
SARS_CORONAVIRUS G---TGGcaTaAgaatagaataattCTTCtA------tTTtAtaAgctTTGTcactacAA
Severe_acute_respiratory_syndrom GCTCaGGTGTTA------------CtTTCCAAaGTgcagTgAAaAgAAcaaT-----cAA
SARS_coronavirus_civet007 GCTCTGGTGTTA------------CCTTCCAAGGTAAGTTCAAGAAAATTGT-----TAA
SARS_coronavirus_GZ50 GCTCTGGTGTTA------------CCTTCCAAGGTAAGTTCAAGAAAATTGT-----TAA
SARS_coronavirus_Taiwan_TC1 GCTCTGGTGTTA------------CCTTCCAAGGTAAGTTCAAGAAAATTGT-----TAA
Bat_coronavirus_(BtCoV/273/2005) GtTCTGGTGTgA------------CtTTtCAAGGTAAGTTCAAGAAAATaGT-----TAA
BtRf-BetaCoV/HeB2013 GtTCTGGTGTgA------------CtTTtCAAGGTAAGTTCAAGAAAATaGT-----TAA
SARS_CORONAVIRUS GGctgtgCATCATaGaA-----CTtcCaTTCT--ACATCA------------GcTtgAgG
Severe_acute_respiratory_syndrom GGGtACaCAcCAcTGGtTGtTaCTcACaaTtTTGACtTCACTtTTAgTTtTAGTcCAgAG
SARS_coronavirus_civet007 GGGCACTCATCATTGGATGCTTtTAACTTTCTTGACATCACTATTgATTCTAGTTCAAAG
SARS_coronavirus_GZ50 GGGCACTCATCATTGGATGCTTtTAACTTTCTTGACATCACTATTgATTCTtGTTCAAAG
SARS_coronavirus_Taiwan_TC1 GGGCACTCATCATTGGATGCTTtTAACTTTCTTGACATCACTATTgATTCTtGTTCAAAG
Bat_coronavirus_(BtCoV/273/2005) GGGCACTCATCATTGGATGCTcCTtACTTTCTTGACATCACTtTTAATTCTcGTTCAAAG
BtRf-BetaCoV/HeB2013 GGGCACTCATCATTGGATGCTcCTtACTTTCTTGACATCACTtTTAATTCTcGTTCAAAG
SARS_CORONAVIRUS TACACActtaatagctttaggGTtacCAaTGTcgtgaagaactgggaaTTTgTcTGcTaA
Severe_acute_respiratory_syndrom TACtCA---------------aTGGTCttTGTT---------------cTTtTTTtTgTA
SARS_coronavirus_civet007 TACACA---------------GTGGTCACTGTT---------------TTTCTTTGTTTA
SARS_coronavirus_GZ50 TACACA---------------GTGGTCACTGTT---------------TTTCTTTGTTTA
SARS_coronavirus_Taiwan_TC1 TACACA---------------GTGGTCACTGTT---------------TTTCTTTGTTTA
Bat_coronavirus_(BtCoV/273/2005) TACACA---------------GTGGTCACTGTT---------------TTTCTTTGTTTA
BtRf-BetaCoV/HeB2013 TACACA---------------GTGGTCACTGTT---------------TTTCTTTGTTTA
SARS_CORONAVIRUS TaAtgcaGCTTTaacaaccatgtgttgaacCTTtCtacaagccgCATTaAtctTcaGTtc
Severe_acute_respiratory_syndrom TGAaAATGCcTT------------------tTTaC---------CtTTTgCTaTgGGTAT
SARS_coronavirus_civet007 cGAGAATGCTTT------------------CTTGC---------CATTTACTCTTGGTAT
SARS_coronavirus_GZ50 cGAGAATGCTTT------------------CTTGC---------CATTTACTCTTGGTAT
SARS_coronavirus_Taiwan_TC1 cGAGAATGCTTT------------------CTTGC---------CATTTACTCTTGGTAT
Bat_coronavirus_(BtCoV/273/2005) TGAGAATGCTTT------------------CTTGC---------CATTTACTtTTGGTAT
BtRf-BetaCoV/HeB2013 TGAGAATGCTTT------------------CTTGC---------CATTTACTCTTGGTAT
SARS_CORONAVIRUS atcacCAATTataGgATaTtCaATagT-CcaGTCAAcacGCtTAAcaAaGCAcTCgTG--
Severe_acute_respiratory_syndrom TATtGCtATgtCTGCtTtTGCaATGaTGtTTGTCAA---aCATAAGCAtGCATTtCTcTG
SARS_coronavirus_civet007 TATGGCAATTGCTGCATGTGCTATGCTGCTTGTtAA---GCATAAGCACGCATTCtTGTG
SARS_coronavirus_GZ50 TATGGCAATTGCTGCATGTGCTATGCTGCTTGTtAA---GCATAAGCACGCATTCtTGTG
SARS_coronavirus_Taiwan_TC1 TATGGCAATTGCTGCATGTGCTATGCTGCTTGTtAA---GCATAAGCACGCATTCtTGTG
Bat_coronavirus_(BtCoV/273/2005) TATGGCtATTGCTGCtTGTGCTATGCTtCTgGTCAA---GCATAAaCAtGCcTTCCTGTG
BtRf-BetaCoV/HeB2013 TATGGCtATTGCTGCtTGTGCTATGCTtCTgGTCAA---GCATAAaCAtGCcTTCCTGTG
SARS_CORONAVIRUS ------------------------gACAGcTagacACcTagtcATGaT-TgCATcaCaaC
Severe_acute_respiratory_syndrom tTTGTTTtTGTTACCTTCTCTTGCcACtGTaGCTTAtTTTAATATGGTCTAtATGCCTGC
SARS_coronavirus_civet007 CTTGTTTCTGTTACCTTCTCTTGCAACAGTTGCTTACTTTAATATGGTCTACATGCCTGC
SARS_coronavirus_GZ50 CTTGTTTCTGTTACCTTCTCTTGCAACAGTTGCTTACTTTAATATGGTCTACATGCCTGC
SARS_coronavirus_Taiwan_TC1 CTTGTTTCTGTTACCTTCTCTTGCAACAGTTGCTTACTTTAATATGGTCTACATGCCTGC
Bat_coronavirus_(BtCoV/273/2005) CTTGTTTCTGTTACCTTCTCTTGCAACAGTTGCTTAtTTcAATATGGTCTACATGCCTGC
BtRf-BetaCoV/HeB2013 CTTGTTTCTaTTACCTTCTCTTGCAACAGTTGCTTAtTTcAATATGGTCTACATGCCTGC
SARS_CORONAVIRUS TAGCTa---cATGtGcATTAc--CATGGaCTTGAcaataCaGATcaTgGtTgcTtTGtag
Severe_acute_respiratory_syndrom TAGtTGGGTGATGCGTATTATGACATGG-tTgGAtaTGGtTGATACTAGtTTGTCTGGTT
SARS_coronavirus_civet007 TAGCTGGGTGATGCGTATcATGACATGG-CTTGAATTGGCTGAcACTAGCTTGTCTGGTT
SARS_coronavirus_GZ50 TAGCTGGGTGATGCGTATcATGACATGG-CTTGAATTGGCTGAcACTAGCTTGTCTGGTT
SARS_coronavirus_Taiwan_TC1 TAGCTGGGTGATGCGTATcATGACATGG-CTTGAATTGGCTGAcACTAGCTTGTCTGGTT
Bat_coronavirus_(BtCoV/273/2005) TAGCTGGGTGATGCGTATTATGACATGG-CTcGAATTGGCTGATACTAGCTTGTCTGGTT
BtRf-BetaCoV/HeB2013 TAGCTGGGTGATGCGTATTATGACATGG-CTcGAATTGGCTGATACTAGCTTGTCTGGTT
SARS_CORONAVIRUS gTtacCTgtAAaACcccaTTgT-TgaaCaTCAatcaTAa-AcgGaTTATagaCgTaA---
Severe_acute_respiratory_syndrom tTAaGCTaAAAGACTGTGTTATGTATGCaTCAGCTgTAGTgTTaCTaATCCTtATGACAG
SARS_coronavirus_civet007 ATAGGCTTAAgGAtTGTGTTATGTATGCTTCAGCTTTAGTtTTGCTTATtCTCATGACAG
SARS_coronavirus_GZ50 ATAGGCTTAAgGAtTGTGTTATGTATGCTTCAGCTTTAGTtTTGCTTATtCTCATGACAG
SARS_coronavirus_Taiwan_TC1 ATAGGCTTAAgGAtTGTGTTATGTATGCTTCAGCTTTAGTtTTGCTTATtCTCATGACAG
Bat_coronavirus_(BtCoV/273/2005) ATcGGCTTAAAGACTGTGTTATGTATGCgTCAGCcTTAGTAcTaCTcAcCCTCATGACtG
BtRf-BetaCoV/HeB2013 ATcGGCTTAAAGACTGTGTTATGTATGCgTCAGCcTTAGTAcTaCTcAcCCTCATGACtG
SARS_CORONAVIRUS -TCaaAtccaaTAgaATGATGCcaacAGGCataaGTGTcTGaAgCAgTG--GAAaagCAT
Severe_acute_respiratory_syndrom CaaGaACTGTgTATGATGATGgTGCTAGGa----GaGTgTGGA-CACTtATGAATGTCtT
SARS_coronavirus_civet007 CTCGCACTGTTTATGATGATGCTGCTAGaC----GTGTTTGGA-CACTGATGAATGTCAT
SARS_coronavirus_GZ50 CTCGCACTGTTTATGATGATGCTGCTAGaC----GTGTTTGGA-CACTGATGAATGTCAT
SARS_coronavirus_Taiwan_TC1 CTCGCACTGTTTATGATGATGCTGCTAGaC----GTGTTTGGA-CACTGATGAATGTCAT
Bat_coronavirus_(BtCoV/273/2005) CTCGtACTGTcTATGATGATGCTGCTAGGC----GTGTaTGGA-CAtTGATGAATGTCAT
BtRf-BetaCoV/HeB2013 CTCGtACTGTcTATGATGATGCTGCTAGGC----GTGTaTGGA-CAtTGATGAATGTCAT
SARS_CORONAVIRUS gtggCacGTcTATcAcaTagACaAcaGgtgcGC-TcAGgTC---CTATTTtCAcaaaata
Severe_acute_respiratory_syndrom gACACTcGTTTATAAAGTtTAtTATGGTAATGCTTTAGATCAAGCcATTTCCATGTGGGC
SARS_coronavirus_civet007 TACACTTGTTTAcAAAGTCTACTATGGTAATGCTTTAGATCAAGCTATTTCCATGTGGGC
SARS_coronavirus_GZ50 TACACTTGTTTAcAAAGTCTACTATGGTAATGCTTTAGATCAAGCTATTTCCATGTGGGC
SARS_coronavirus_Taiwan_TC1 TACACTTGTTTAcAAAGTCTACTATGGTAATGCTTTAGATCAAGCTATTTCCATGTGGGC
Bat_coronavirus_(BtCoV/273/2005) TACACTTGTTTATAAAGTCTAtTATGGTAATtCcTTAGATCAAGCTATTTCCATGTGGGC
BtRf-BetaCoV/HeB2013 TACACTTGTTTATAAAGTCTAtTATGGTAATtCcTTAGATCAAGCTATTTCCATGTGGGC
SARS_CORONAVIRUS CT---TcATagaTGTcAaCTCaAAgCcAT----GTGcCcaTAaGACaAatAcGacTcT-G
Severe_acute_respiratory_syndrom tcTtaTaATcTCTGTtACtTCTAA-CTAcTCaGGTGTaGTTACaACTgTCATGTTTTTgG
SARS_coronavirus_civet007 CTTAGTTATTTCTGTAACCTCTAA-CTATTCTGGTGTCGTTACGACTATCATGTTTTTAG
SARS_coronavirus_GZ50 CTTAGTTATTTCTGTAACCTCTAA-CTATTCTGGTGTCGTTACGACTATCATGTTTTTAG
SARS_coronavirus_Taiwan_TC1 CTTAGTTATTTCTGTAACCTCTAA-CTATTCTGGTGTCGTTACGACTATCATGTTTTTAG
Bat_coronavirus_(BtCoV/273/2005) tcTtGTTATTTCTGTAACCTCTAA-CTATTCTGGTGTCGTTACGACTATCATGTTcTTAG
BtRf-BetaCoV/HeB2013 tcTtGTTATTTCTGTAACCTCTAA-CTATTCTGGTGTCGTTACGACTATCATGTTcTTAG
SARS_CORONAVIRUS tcAGAGagA---TTTTTaaGTGTGTca---cTTAaCaTTTGTacAaTCtTTAtacGCAct
Severe_acute_respiratory_syndrom CcAGAGgTATtGTTTTTaTGTGTGTTGAGTATTgCCCTaTtT-TcTTCATaACTGGtAAt
SARS_coronavirus_civet007 CTAGAGCTATAGTgTTTGTGTGTGTTGAGTATTACCCaTTGT-TATTtATTACTGGCAAC
SARS_coronavirus_GZ50 CTAGAGCTATAGTgTTTGTGTGTGTTGAGTATTACCCaTTGT-TATTtATTACTGGCAAC
SARS_coronavirus_Taiwan_TC1 CTAGAGCTATAGTgTTTGTGTGTGTTGAGTATTAtCCaTTGT-TATTtATTACTGGCAAC
Bat_coronavirus_(BtCoV/273/2005) CTAGAGCTATAGTTTTTGTGTGTGTTGAGTATTACCCTTTcT-TgTTCATTACTGGCAAC
BtRf-BetaCoV/HeB2013 CTAGAGCTATAGTTTTTGTGTGTGTTGAGTATTACCCTTTcT-TgTTCATTACTGGCAAC
SARS_CORONAVIRUS ACaTTcCAagGaA--------GTcctTTGTacaTaAGtGgTATgaggTGTT--------T
Severe_acute_respiratory_syndrom ACacTtCAGTGTATaATGCTaGTTTATTGTTTCTTAG-GCTAT----TtTTGtactTGtT
SARS_coronavirus_civet007 ACCTTACAGTGTATCATGCTTGTTTATTGTTTCTTAG-GCTAT----TGTTGCTGCTGCT
SARS_coronavirus_GZ50 ACCTTACAGTGTATCATGCTTGTTTATTGTTTCTTAG-GCTAT----TGTTGCTGCTGCT
SARS_coronavirus_Taiwan_TC1 ACCTTACAGTGTATCATGCTTGTTTATTGTTTCTTAG-GCTAT----TGTTGCTGCTGCT
Bat_coronavirus_(BtCoV/273/2005) ACCTTACAGTGTATtATGCTTGTcTATTGTTTCTTAG-GCTAT----TGTTGCTGCTGCT
BtRf-BetaCoV/HeB2013 ACCTTACAGTGTATCATGCTTGTTTATTGTTTCTTAG-GCTAT----TGTTGCTGtTGCT
SARS_CORONAVIRUS AaaTTGatCTC-----------CAggCGgTggTTTAGcACTaACTCTgGaaaaaTcTGtA
Severe_acute_respiratory_syndrom ACTTTGGCCTCTTtTGTTTACTCAACCGCTACTTTAG-ACTgACTCTTGGTGTTTATG-A
SARS_coronavirus_civet007 ACTTTGGCCTtTTCTGTTTACTCAACCGtTACTTcAG-gCTTACTCTTGGTGTTTATG-A
SARS_coronavirus_GZ50 ACTTTGGCCTtTTCTGTTTACTCAACCGtTACTTcAG-gCTTACTCTTGGTGTTTATG-A
SARS_coronavirus_Taiwan_TC1 ACTTTGGCCTtTTCTGTTTACTCAACCGtTACTTcAG-gCTTACTCTTGGTGTTTATG-A
Bat_coronavirus_(BtCoV/273/2005) ACTTTGGCCTCTTtTGTTTACTCAACCGCTACTTTAG-ACTTACTCTTGGTGTTTATG-A
BtRf-BetaCoV/HeB2013 ACTTTGGCCTCTTtTGTTTACTCAACCGCTACTTTAG-ACTTACTCTTGGTGTTTATG-A
SARS_CORONAVIRUS tTAtTaGGTgTaTcaACAtaAccTgTAGGTAcAgcAACT-----aGGtTaacaCCTgtag
Severe_acute_respiratory_syndrom tTACTTaGTtTCTACACAgGAgTT-TAGaTATATGAAtTCaCAGGGaCTacTcCCa----
SARS_coronavirus_civet007 CTACTTGGTCTCTACACAAGAATT-TAGGTATATGAACTCCCAGGGGCTTTTGCCT----
SARS_coronavirus_GZ50 CTACTTGGTCTCTACACAAGAATT-TAGGTATATGAACTCCCAGGGGCTTTTGCCT----
SARS_coronavirus_Taiwan_TC1 CTACTTGGTCTCTACACAAGAATT-TAGGTATATGAACTCCCAGGGGCTTTTGCCT----
Bat_coronavirus_(BtCoV/273/2005) CTAtTTGGTCTCcACACAgGAgTT-TAGaTATATGAACTCaCAaGGGCTTTTGCCa----
BtRf-BetaCoV/HeB2013 CTAtTTGGTCTCcACACAgGAgTT-TAGaTATATGAACTCgCAaGGGCTTTTGCCa----
SARS_CORONAVIRUS aaaaaCCTAgctgtaaaggtAaAtTgGTAccaAcagcTTCtctagTAgCATgAcAccccT
Severe_acute_respiratory_syndrom -----CCcA-----------AGAaTAGcATaGATGCcTTCAAaCTcAACATTAAATTGTT
SARS_coronavirus_civet007 -----CCTA-----------AGAGTAGTATTGATGCTTTCAAGCTTAACATTAAgTTGTT
SARS_coronavirus_GZ50 -----CCTA-----------AGAGTAGTATTGATGCTTTCAAGCTTAACATTAAgTTGTT
SARS_coronavirus_Taiwan_TC1 -----CCTA-----------AGAGTAGTATTGATGCTTTCAAGCTTAACATTAAgTTGTT
Bat_coronavirus_(BtCoV/273/2005) -----CCTA-----------AGAGTAGTATTGATGCaTTCAAGCTTAACATTAAATTGcT
BtRf-BetaCoV/HeB2013 -----CCTA-----------AGAGTAGTATTGATGCaTTCAAGCTTAACATTAAATTGcT
SARS_CORONAVIRUS cGacATcGaAGccAAtCCATGcAc------------------------------------
Severe_acute_respiratory_syndrom GGGTgTTGGtGGcAAACCtTGTATCAAAGTaGCcACTGTACAGTCTAAAATGTCaGAtGT
SARS_coronavirus_civet007 GGGTATTGGAGGTAAACCATGTATCAAgGTTGCTACTGTACAGTCTAAAATGTCTGACGT
SARS_coronavirus_GZ50 GGGTATTGGAGGTAAACCATGTATCAAgGTTGCTACTGTACAGTCTAAAATGTCTGACGT
SARS_coronavirus_Taiwan_TC1 GGGTATTGGAGGTAAACCATGTATCAAgGTTGCTACTGTACAGTCTAAAATGTCTGACGT
Bat_coronavirus_(BtCoV/273/2005) GGGcATTGGAGGaAAACCATGcATaAAAGTTGCTACTGTtCAGTCTAAAATGTCTGACGT
BtRf-BetaCoV/HeB2013 GGGcATTGGAGGaAAACCATGcATaAAAGTTGCTACTGTtCAGTCTAAAATGTCTGACGT
SARS_CORONAVIRUS ---GTaCAtgTCTtatagctTctTCgCGGgTgaTaAACAtgTTAGgGTAa------Ccat
Severe_acute_respiratory_syndrom AAAGTGCACATCaGTaGTctTACTCTCaGTTtTgCAACAACTcAGAGTAGAATCATCaTC
SARS_coronavirus_civet007 AAAGTGCACATCTGTGGTACTgCTCTCGGTTCTTCAACAACTTAGAGTAGAgTCATCTTC
SARS_coronavirus_GZ50 AAAGTGCACATCTGTGGTACTgCTCTCGGTTCTTCAACAACTTAGAGTAGAgTCATCTTC
SARS_coronavirus_Taiwan_TC1 AAAGTGCACATCTGTGGTACTgCTCTCGGTTCTTCAACAACTTAGAGTAGAgTCATCTTC
Bat_coronavirus_(BtCoV/273/2005) gAAGTGCACtTCTGTtGTACTACTtTCtGTTCTTCAACAACTTAGAGTAGAATCATCTTC
BtRf-BetaCoV/HeB2013 gAAGTGCACtTCTGTtGTACTACTtTCtGTTCTTCAACAACTTAGAGTAGAATCATCTTC
SARS_CORONAVIRUS TAAcTTG--------------AtAATTC---------ATTtT--------AAaACcCA--
Severe_acute_respiratory_syndrom TAAATTGTGGGCtCAATGTGTcCAgTTaCACAATGACATTCTctTaGCtAAAGAtACtAC
SARS_coronavirus_civet007 TAAATTGTGGGCACAATGTGTACAAcTCCACAATGAtATTCTTCTTGCAAAAGACACAAC
SARS_coronavirus_GZ50 TAAATTGTGGGCACAATGTGTACAAcTCCACAATGAtATTCTTCTTGCAAAAGACACAAC
SARS_coronavirus_Taiwan_TC1 TAAATTGTGGGCACAATGTGTACAAcTCCACAATGAtATTCTTCTTGCAAAAGACACAAC
Bat_coronavirus_(BtCoV/273/2005) TAAATTGTGGGCACAATGTGTgCAATTgCACAATGACATTtTatTgGCtAAAGACACAAC
BtRf-BetaCoV/HeB2013 TAAATTGTGGGCACAATGTGTgCAATTgCACAATGACATTtTatTgGCtAAAGACACAAC
SARS_CORONAVIRUS --------TCatAgAGATGagTctTCTaTaGgtcaTgTcctTAggtATGCcaGGTa-TGT
Severe_acute_respiratory_syndrom TGAAGCCTTtGAAAAaATGGTTTCaCTacTtTCTGTTTTGCTtTCCATGCAGGGTGCTGT
SARS_coronavirus_civet007 TGAAGCtTTCGAgAAGATGGTTTCTCTTTTGTCTGTTTTGCTATCCATGCAGGGTGCTGT
SARS_coronavirus_GZ50 TGAAGCtTTCGAgAAGATGGTTTCTCTTTTGTCTGTTTTGCTATCCATGCAGGGTGCTGT
SARS_coronavirus_Taiwan_TC1 TGAAGCtTTCGAgAAGATGGTTTCTCTTTTGTCTGTTTTGCTATCCATGCAGGGTGCTGT
Bat_coronavirus_(BtCoV/273/2005) TGAAGCCTTtGAAAAGATGGTTTCTCTTcTGTCTGTTcTGCTATCtATGCAaGGTGCTGT
BtRf-BetaCoV/HeB2013 TGAAGCCTTtGAAAAGATGGTTTCTCTTcTGTCTGTTcTGCTATCtATGCAaGGTGCTGT
SARS_CORONAVIRUS caACAc--------------------------ATAAaC--------CTTCAG--------
Severe_acute_respiratory_syndrom AGACATaAACAAGCTtTGtGAaGAAATGCTgGAcAACaGgGCaACCtTaCAaGCTATaGC
SARS_coronavirus_civet007 AGACATTAAtAgGtTGTGCGAGGAAATGCTCGATAACCGTGCTACtCTTCAGGCTATTGC
SARS_coronavirus_GZ50 AGACATTAAtAgGtTGTGCGAGGAAATGCTCGATAACCGTGCTACtCTTCAGGCTATTGC
SARS_coronavirus_Taiwan_TC1 AGACATTAAtAgGtTGTGCGAGGAAATGCTCGATAACCGTGCTACtCTTCAGGCTATTGC
Bat_coronavirus_(BtCoV/273/2005) AGACATcAACAAaCTGTGCGAGGAAATGCTCGAcAACCGcGCTACCCTgCAGGCTATTGC
BtRf-BetaCoV/HeB2013 AGACATcAACAAaCTGTGCGAGGAAATGCTCGAcAACCGcGCTACCCTgCAGGCTATTGC
SARS_CORONAVIRUS TTttGAATTTAG------------------------TGtCAacaCTgAGGtgtgtAGGtg
Severe_acute_respiratory_syndrom cTCAGAgTTTAGTTCccTtCCATCATATGCaGCTTtTGCtACTGCTCAaG-----AaGCt
SARS_coronavirus_civet007 TTCAGAATTTAGTTCTTTACCATCATATGCCGCTTATGCCACTGCcCAGG-----AGGCC
SARS_coronavirus_GZ50 TTCAGAATTTAGTTCTTTACCATCATATGCCGCTTATGCCACTGCcCAGG-----AGGCC
SARS_coronavirus_Taiwan_TC1 TTCAGAATTTAGTTCTTTACCATCATATGCCGCTTATGCCACTGCcCAGG-----AGGCC
Bat_coronavirus_(BtCoV/273/2005) TTCAGAATTTAGTTCTTTACCATCATATGCtGCcTATGCtACaGCTCAaG-----AGGCt
BtRf-BetaCoV/HeB2013 TTCAGAATTTAGTTCTTTACCATCATATGCtGCcTATGCtACaGCTCAaG-----AGGCt
SARS_CORONAVIRUS ccTGtGtAGGaTGTAaCccA--GTGATT-----acCtTaCTacAAtctTTAAAGAgtcCT
Severe_acute_respiratory_syndrom TATGAGCAGGCTGTtGCTAATGGTGATTCTGAAGTtGTTCTtAAAAAGTTgAAGAAgTCT
SARS_coronavirus_civet007 TATGAGCAGGCTGTAGCTAATGGTGATTCTGAAGcCGTTCTCAAAAAGTTAAAGAAATCT
SARS_coronavirus_GZ50 TATGAGCAGGCTGTAGCTAATGGTGATTCTGAAGTCGTTCTCAAAAAGTTAAAGAAATCT
SARS_coronavirus_Taiwan_TC1 TATGAGCAGGCTGTAGCTAATGGTGATTCTGAAGTCGTTCTCAAAAAGTTAAAGAAATCT
Bat_coronavirus_(BtCoV/273/2005) TATGAGCAGGCTGTAGCaAATGGTGATTCTGAAGTtGTTCTtAAAAAGTTAAAGAAATCT
BtRf-BetaCoV/HeB2013 TATGAGCAGGCgGTAGCaAATGGTGATTCTGAAGTtGTTCTtAAAAAGTTAAAGAAATCT
SARS_CORONAVIRUS ---------GtTAcATtT---TcaGcttGTaAaGtTGCCAcatTcCtACGTggaaTttcA
Severe_acute_respiratory_syndrom TTGAATGTGGCTAAATCTGAaTTTGACCGTGATGCaGCCA---TGCAACGTAAGTTGGAA
SARS_coronavirus_civet007 TTGAATGTGGCTAAATCTGAGTTTGACCGTGATGCTGCCA---TGCAACGcAAGTTGGAA
SARS_coronavirus_GZ50 TTGAATGTGGCTAAATCTGAGTTTGACCGTGATGCTGCCA---TGCAACGcAAGTTGGAA
SARS_coronavirus_Taiwan_TC1 TTGAATGTGGCTAAATCTGAGTTTGACCGTGATGCTGCCA---TGCAACGcAAGTTGGAA
Bat_coronavirus_(BtCoV/273/2005) TTGAATGTGGCTAAATCTGAGTTTGACCGTGATGCTGCCA---TGCAACGTAAGTTGGAg
BtRf-BetaCoV/HeB2013 TTGAATGTGGCTAAATCTGAGTTTGACCGTGATGCTGCCA---TGCAACGTAAGTTGGAg
SARS_CORONAVIRUS AgacTtGtAaATtgcaactTGtCatAAAgGTctCtAtCAGaCA-----------------
Severe_acute_respiratory_syndrom AAGATGGCtGATCAaGCTATGACCCAAATGTA-tAAACAGGCtAGATCTGAGGACAAGAG
SARS_coronavirus_civet007 AAGATGGCAGATCAGGCTATGACCCAAATGTA-CAAACAGGCAAGATCTGAGGACAAGAG
SARS_coronavirus_GZ50 AAGATGGCAGATCAGGCTATGACCCAAATGTA-CAAACAGGCAAGATCTGAGGACAAGAG
SARS_coronavirus_Taiwan_TC1 AAGATGGCAGATCAGGCTATGACCCAAATGTA-CAAACAGGCAAGATCTGAGGACAAGAG
Bat_coronavirus_(BtCoV/273/2005) AAGATGGCgGATCAGGCTATGACCCAAATGTA-CAAACAGGCAAGATCTGAaGACAAGAG
BtRf-BetaCoV/HeB2013 AAGATGGCgGAcCAGGCTATGACCCAAATGTA-CAAACAGGCAAGATCTGAaGACAAGAG
SARS_CORONAVIRUS -----------------tTATGCAAAgtATGC--cTactTtTGCTctGGtAa--------
Severe_acute_respiratory_syndrom GGCAAAAGTtACTAGTGCTATGCAgACAATGCTtTTCACTATGCTTAGaAAGtTgGATAA
SARS_coronavirus_civet007 GGCAAAAGTAACTAGTGCTATGCAAACAATGCTCTTCACTATGCTTAGGAAGCTTGATAA
SARS_coronavirus_GZ50 GGCAAAAGTAACTAGTGCTATGCAAACAATGCTCTTCACTATGCTTAGGAAGCTTGATAA
SARS_coronavirus_Taiwan_TC1 GGCAAAAGTAACTAGTGCTATGCAAACAATGCTCTTCACTATGCTTAGGAAGCTTGATAA
Bat_coronavirus_(BtCoV/273/2005) GGCAAAAGTtACTAGTGCaATGCAgACAATGCTtTTCACTATGCTTAGGAAGCTaGATAA
BtRf-BetaCoV/HeB2013 GGCAAAAGTtACTAGTGCaATGCAgACAATGCTtTTCACTATGCTTAGGAAGCTaGATAA
SARS_CORONAVIRUS ---------TAgCAACATTAaatctgTttACAtTaCAaGaGtgaGcTGTttcagtgGTTt
Severe_acute_respiratory_syndrom TGATGCACTcAACAACATTA------TCAACAATGCAaGaGATGGTTGT-------GTTC
SARS_coronavirus_civet007 TGATGCACTTAACAACATTA------TCAACAATGCgCGTGATGGTTGT-------GTTC
SARS_coronavirus_GZ50 TGATGCACTTAACAACATTA------TCAACAATGCgCGTGATGGTTGT-------GTTC
SARS_coronavirus_Taiwan_TC1 TGATGCACTTAACAACATTA------TCAACAATGCgCGTGATGGTTGT-------GTTC
Bat_coronavirus_(BtCoV/273/2005) TGATGCACTTAACAACATTA------TCAACAATGCACGTGATGGTTGT-------GTaC
BtRf-BetaCoV/HeB2013 TGATGCACTTAACAACATTA------TCAAtAATGCACGTGATGGTTGT-------GTaC
SARS_CORONAVIRUS gAgTgAAtATgAcA-------------tAGtCAtAtTC--------TGagCCctgTgATG
Severe_acute_respiratory_syndrom CctTgAACATaATACCtCTtACAACAGCAGCCAAACTaATGGTTGTcaTACCaGAcTATa
SARS_coronavirus_civet007 CACTCAACATCATACCAtTGACtACAGCAGCCAAACTCATGGTTGTTGTcCCTGATTATG
SARS_coronavirus_GZ50 CACTCAACATCATACCAtTGACtACAGCAGCCAAACTCATGGTTGTTGTcCCTGATTATG
SARS_coronavirus_Taiwan_TC1 CACTCAACATCATACCAtTGACtACAGCAGCCAAACTCATGGTTGTTGTcCCTGATTATG
Bat_coronavirus_(BtCoV/273/2005) CACTCAACATCATACCACTtACAACAGCAGCtAAACTCATGGTTGTTGTACCTGATTATG
BtRf-BetaCoV/HeB2013 CACTCAACATCATACCACTtACAACAGCAGCtAAACTtATGGTTGTTGTACCTGATTATG
SARS_CORONAVIRUS a-AtCaACA-----gtTTGaGtTGGTagtcccAAaAtCTTTg---AgGCtaCaGCAtTCT
Severe_acute_respiratory_syndrom acACaTAtAAaAAtACgTGTGATGGT------AcaACaTTTACtTATGCATCaGCAtTgT
SARS_coronavirus_civet007 GTACCTACAAGAACACTTGTGATGGT------AACACCTTTACATATGCATCTGCACTCT
SARS_coronavirus_GZ50 GTACCTACAAGAACACTTGTGATGGT------AACACCTTTACATATGCATCTGCACTCT
SARS_coronavirus_Taiwan_TC1 GTACCTACAAGAACACTTGTGATGGT------AACACCTTTACATATGCATCTGCACTCT
Bat_coronavirus_(BtCoV/273/2005) GaACCTACAAGAAtACTTGTGATGGT------AACACtTTTACATATGCATCTGCtCTCT
BtRf-BetaCoV/HeB2013 GaACCTACAAGAAtACTTGTGATGGT------AACACtTTTACATATGCATCTGCtCTCT
SARS_CORONAVIRUS GtGAAtT---atAAGgTG-------AaATAaagAcAgctTTtctCcaAGcagggTTAcgT
Severe_acute_respiratory_syndrom GGGAAATCCAaCAgGTTGTaGATGCAGATAGtAAAATTGTTCAACTTAGTGAAATTA-gT
SARS_coronavirus_civet007 GGGAAATCCAGCAAGTTGTTGATGCgGATAGCAAgATTGTTCAACTTAGTGAAATTA-Ac
SARS_coronavirus_GZ50 GGGAAATCCAGCAAGTTGTTGATGCgGATAGCAAgATTGTTCAACTTAGTGAAATTA-Ac
SARS_coronavirus_Taiwan_TC1 GGGAAATCCAGCAAGTTGTTGATGCgGATAGCAAgATTGTTCAACTTAGTGAAATTA-Ac
Bat_coronavirus_(BtCoV/273/2005) GGGAAATtCAGCAAGTTGTTGATGCAGATAGtAAAATTGTcCcgCTTAGTGAAATTA-AT
BtRf-BetaCoV/HeB2013 GGGAAATtCAGCAAGTTGTTGATGCAGATAGtAAAATTGTcCcgCTTAGTGAAATTA-AT
SARS_CORONAVIRUS gTaaggAATTCtcttACCAcgccTAttTgTGGCCTgTTA--aTTgCAGaTgaAAcatcat
Severe_acute_respiratory_syndrom ATGGACAATTC----ACCtAATTTAGCa-TGGCCTCTTATTGTaACAGCTtTAA------
SARS_coronavirus_civet007 ATGGACAATTC----ACCAAATTTgGCT-TGGCCTCTTATTGTTACAGCTCTAA------
SARS_coronavirus_GZ50 ATGGACAATTC----ACCAAATTTgGCT-TGGCCTCTTATTGTTACAGCTCTAA------
SARS_coronavirus_Taiwan_TC1 ATGGACAATTC----ACCAAATTTgGCT-TGGCCTCTTATTGTTACAGCTCTAA------
Bat_coronavirus_(BtCoV/273/2005) ATGGAtAATTC----ACCAAATcTAGCT-TGGCCTCTTATTGTTACtGCaCTAA------
BtRf-BetaCoV/HeB2013 ATGGAtAATTC----ACCAAATcTAGCT-TGGCCTCTTATTGTTACtGCaCTAA------
SARS_CORONAVIRUS gcGtGatAACaCcctTaTaAAACatTttAaAgcAtTGAgCTGAtT----TgtCttT----
Severe_acute_respiratory_syndrom --GgGCCAAtTCtGCTGTCAAAt--TACAGAATAATGAgCTtAGTCCtGTtGCACTACGA
SARS_coronavirus_civet007 --GAGCCAACTCAGCTGTtAAAC--TACAGAATAATGAACTGAGTCCAGTAGCACTACGA
SARS_coronavirus_GZ50 --GAGCCAACTCAGCTGTtAAAC--TACAGAATAATGAACTGAGTCCAGTAGCACTACGA
SARS_coronavirus_Taiwan_TC1 --GAGCCAACTCAGCTGTtAAAC--TACAGAATAATGAACTGAGTCCAGTAGCACTACGA
Bat_coronavirus_(BtCoV/273/2005) --GAGCCAACTCAGCTGTCAAAC--TACAGAATAATGAACTGAGTCCAGTAGCACTACGA
BtRf-BetaCoV/HeB2013 --GAGCCAACTCAGCTGTCAAAC--TACAGAATAATGAACTGAGTCCAGTAGCACTACGA
SARS_CORONAVIRUS ---ATGTgCTtTaaGctTatTAtCAtAaacCAAAgcaCTcacAgTGtcaACAAT------
Severe_acute_respiratory_syndrom CAGATGTCtTGTGCtGCcGGTACtACA---CAAACtGCTTGcACTGATGACAATGCgtTa
SARS_coronavirus_civet007 CAGATGTCCTGTGCGGCTGGTACCACA---CAAACAGCTTGTACTGATGACAATGCACTT
SARS_coronavirus_GZ50 CAGATGTCCTGTGCGGCTGGTACCACA---CAAACAGCTTGTACTGATGACAATGCACTT
SARS_coronavirus_Taiwan_TC1 CAGATGTCCTGTGCGGCTGGTACCACA---CAAACAGCTTGTACTGATGACAATGCACTT
Bat_coronavirus_(BtCoV/273/2005) CAGATGTCtTGTGCaGCTGGTACtACA---CAAACAGCTTGTACTGATGACAATGCACTT
BtRf-BetaCoV/HeB2013 CAGATGTCtTGTGCaGCTGGTACtACA---CAAACAGCTTGTACTGATGACAATGCACTT
SARS_CORONAVIRUS --------------TTCagcaGGA----------------CAacgCcgaCAagttcCgAg
Severe_acute_respiratory_syndrom GCtTACTAcAACAcaaCaAAGGGAGGTAGGTTTGTaCTtGCAcTgtTATCcGAtttaCAg
SARS_coronavirus_civet007 GCCTACTATAACAATTCGAAGGGAGGTAGGTTTGTGCTGGCATTACTATCAGACCACCAA
SARS_coronavirus_GZ50 GCCTACTATAACAATTCGAAGGGAGGTAGGTTTGTGCTGGCATTACTATCAGACCACCAA
SARS_coronavirus_Taiwan_TC1 GCCTACTATAACAATTCGAAGGGAGGTAGGTTTGTGCTGGCATTACTATCAGACCACCAA
Bat_coronavirus_(BtCoV/273/2005) GCCTAtTAcAACAAcTCtAAGGGAGGTAGGTTTGTGCTGGCATTACTATCAGACCAtCAA
BtRf-BetaCoV/HeB2013 GCCTAtTATAACAAcTCtAAGGGAGGTAGGTTTGTGCTtGCATTACTATCAGACCAtCAA
SARS_CORONAVIRUS GAaCatgtcTGGaCctaTAGtTTtCaTAAG-------------------TcTACACActG
Severe_acute_respiratory_syndrom GATtTgAAATGGGC---TAGATTCCCTAAGAGTGATGGAACtGGTACtATcTAtACA--G
SARS_coronavirus_civet007 GATCTCAAATGGGC---TAGATTCCCTAAGAGTGATGGtACAGGTACAATTTACACA--G
SARS_coronavirus_GZ50 GATCTCAAATGGGC---TAGATTCCCTAAGAGTGATGGtACAGGTACAATTTACACA--G
SARS_coronavirus_Taiwan_TC1 GATCTCAAATGGGC---TAGATTCCCTAAGAGTGATGGtACAGGTACAATTTACACA--G
Bat_coronavirus_(BtCoV/273/2005) GATCTCAAgTGGGC---TAGATTCCCTAAGAGTGAcGGAACAGGTACtATTTAtACA--G
BtRf-BetaCoV/HeB2013 GATCTCAAgTGGGC---TAGATTCCCTAAGAGTGAcGGAACAGGTACtATTTAtACA--G
SARS_CORONAVIRUS AAtTGaAAtattCTgGT------------------tCtAgtGtGCCcttAGTtaGcAATg
Severe_acute_respiratory_syndrom AACTGGAACCACCTTGTAGGTTTGTTACAGACACACCtAAAGGtCCTAAAGT--GAAgTA
SARS_coronavirus_civet007 AACTGGAACCACCTTGTAGGTTTGTTACAGACACACCAAAAGGGCCTAAAGT--GAAATA
SARS_coronavirus_GZ50 AACTGGAACCACCTTGTAGGTTTGTTACAGACACACCAAAAGGGCCTAAAGT--GAAATA
SARS_coronavirus_Taiwan_TC1 AACTGGAACCACCTTGTAGGTTTGTTACAGACACACCAAAAGGGCCTAAAGT--GAAATA
Bat_coronavirus_(BtCoV/273/2005) AACTGGAACCACCTTGTAGGTTTGTTACAGACACcCCAAAAGGaCCTAAAGT--GAAATA
BtRf-BetaCoV/HeB2013 AACTGGAACCACCTTGTAGGTTcGTTACAGACACcCCAAAAGGaCCTAAAGT--GAAATA
SARS_CORONAVIRUS tgcGTggTgCAggtAA---TTgAgCAgggtCgccAATgtAcacATaGTGCTtaGCAcgTa
Severe_acute_respiratory_syndrom tTTaTACTTtATtAAAGGaTTAAACAA---CCTAAATAGAGGTATGGTaCTtGGtAGTTT
SARS_coronavirus_civet007 CTTGTACTTCATCAAAGGCTTAAACAA---CCTAAATAGAGGTATGGTGCTGGGCAGTTT
SARS_coronavirus_GZ50 CTTGTACTTCATCAAAGGCTTAAACAA---CCTAAATAGAGGTATGGTGCTGGGCAGTTT
SARS_coronavirus_Taiwan_TC1 CTTGTACTTCATCAAAGGCTTAAACAA---CCTAAATAGAGGTATGGTGCTGGGCAGTTT
Bat_coronavirus_(BtCoV/273/2005) CTTGTAtTTCATtAAgGGCTTAAACAA---CCTAAATAGAGGTATGGTatTGGGCAGTTT
BtRf-BetaCoV/HeB2013 CTTGTAtTTCATtAAgGGCcTAAACAA---CCTAAATAGAGGTATGGTatTGGGCAGTTT
SARS_CORONAVIRUS AtCTGgcAttGacaacacTCAaatcatAAtTtgtgGCcAttGAAaTttCatCaAAgaCAA
Severe_acute_respiratory_syndrom AGCTGCcACAGTACGTCTaCAaGCTGGtAAT----GCAACAGAAGTgCCTGCCAATTCAA
SARS_coronavirus_civet007 AGCTGCTACAGTACGTCTTCAGGCTGGAAAT----GCtACAGAAGTACCTGCCAATTCAA
SARS_coronavirus_GZ50 AGCTGCTACAGTACGTCTTCAGGCTGGAAAT----GCtACAGAAGTACCTGCCAATTCAA
SARS_coronavirus_Taiwan_TC1 AGCTGCTACAGTACGTCTTCAGGCTGGAAAT----GCtACAGAAGTACCTGCCAATTCAA
Bat_coronavirus_(BtCoV/273/2005) AGCTGCTACAGTACGTCTTCAGGCTGGtAAT----GCAACtGAAGTgCCaGCCAAcTCAA
BtRf-BetaCoV/HeB2013 AGCTGCTACAGTACGTCTTCAGGCTGGtAAT----GCAACtGAAGTgCCaGCCAAcTCAA
SARS_CORONAVIRUS CTaTatcTgC------TGtcgTctCAGgcaATgCattTAcAGtAcAaAAGacaTACtgtt
Severe_acute_respiratory_syndrom CTGTatTaTCtTTCTGTGCTTTTGCtGTAGATgCTGCTAAAGCtTACAAaGATTAtCTAG
SARS_coronavirus_civet007 CTGTGCTTTCCTTCTGTGCTTTTGCAGTAGAcCCTGCTAAAGCATAtAAGGATTACCTAG
SARS_coronavirus_GZ50 CTGTGCTTTCCTTCTGTGCTTTTGCAGTAGAcCCTGCTAAAGCATAtAAGGATTACCTAG
SARS_coronavirus_Taiwan_TC1 CTGTGCTTTCCTTCTGTGCTTTTGCAGTAGAcCCTGCTAAAGCATAtAAGGATTACCTAG
Bat_coronavirus_(BtCoV/273/2005) CTGTGCTTTCtTTCTGcGCcTTTGCtGTtGATCCaGCTAAAGCATACAAaGATTACCTAt
BtRf-BetaCoV/HeB2013 CTGTGCTTTCtTTCTGcGCcTTTGCtGTtGATCCaGCTAAAGCATACAAaGATTACCTAt
SARS_CORONAVIRUS CtAaTGttGaAt------TCACtttgAaTtTaTcAAaAcacTcTacACgagCAC--GTgC
Severe_acute_respiratory_syndrom CtAGTGGgGGACAACCAATCAC--tAAtTGTGTtAAGATGTTGTGTACACACACTGGTAC
SARS_coronavirus_civet007 CAAGTGGAGGACAACCAATCAC--CAACTGTGTGAAGATGTTGTGTACACACACTGGTAC
SARS_coronavirus_GZ50 CAAGTGGAGGACAACCAATCAC--CAACTGTGTGAAGATGTTGTGTACACACACTGGTAC
SARS_coronavirus_Taiwan_TC1 CAAGTGGAGGACAACCAATCAC--CAACTGTGTGAAGATGTTGTGTACACACACTGGTAC
Bat_coronavirus_(BtCoV/273/2005) CAAGTGGAGGACAACCAATCAC--CAAtTGcGTGAAGATGcTGTGcACACACACTGGTAC
BtRf-BetaCoV/HeB2013 CAAGTGGAGGACAACCAATCAC--CAAtTGcGTGAAGATGcTGTGcACACACACTGGTAC
SARS_CORONAVIRUS AGGt---atAATT-CTactACAtttatCtAtAgGCaAATAT-------------TTTaaT
Severe_acute_respiratory_syndrom tGGtCAGGCAATaACaGTtACA-----CCgGAAGCCAATATGGAtCAAGAaTCCTTTGGT
SARS_coronavirus_civet007 AGGACAGGCAATTACTGTAACA-----CCAGAAGCtAAcATGGACCAAGAGTCCTTTGGT
SARS_coronavirus_GZ50 AGGACAGGCAATTACTGTAACA-----CCAGAAGCtAAcATGGACCAAGAGTCCTTTGGT
SARS_coronavirus_Taiwan_TC1 AGGACAGGCAATTACTGTAACA-----CCAGAAGCtAAcATGGACCAAGAGTCCTTTGGT
Bat_coronavirus_(BtCoV/273/2005) AGGACAGGCAATTACcGTAACA-----CCcGAAGCCAATATGGAtCAAGAGTCCTTTGGT
BtRf-BetaCoV/HeB2013 AGGACAGGCAATTACcGTAACA-----CCcGAAGCCAATATGGAtCAAGAGTCCTTTGGT
SARS_CORONAVIRUS GccttcTCAcaTaG--TGcATcaacagcGgCAtgagagCaAgCtgtATaC------AcTa
Severe_acute_respiratory_syndrom GGTGCaTCgTGTTGTCTGTAcTGccGtTGCCACATaGAtCATCCAAATCCTAAAGGATTt
SARS_coronavirus_civet007 GGTGCTTCATGTTGTCTGTATTGTAGATGCCACATTGACCATCCAAATCCTAAAGGATTC
SARS_coronavirus_GZ50 GGTGCTTCATGTTGTCTGTATTGTAGATGCCACATTGACCATCCAAATCCTAAAGGATTC
SARS_coronavirus_Taiwan_TC1 GGTGCTTCATGTTGTCTGTATTGTAGATGCCACATTGACCATCCAAATCCTAAAGGATTC
Bat_coronavirus_(BtCoV/273/2005) GGTGCTTCATGTTGTCTGTATTGTAGATGCCACATTGAtCATCCAAATCCTAAgGGATTt
BtRf-BetaCoV/HeB2013 GGTGCTTCATGTTGTCTGTATTGTAGATGCCACATTGAtCATCCAAATCCTAAgGGATTt
SARS_CORONAVIRUS TGcGAgcaGAAgGGTAg-------tAgAgAgCTA-------gGCcAATagCaaAaTGacT
Severe_acute_respiratory_syndrom TGTGACTTaAAAGGTAAGTAtGTaCAAATACCTACaACTTGTGCTAATGACCCtGTGGGT
SARS_coronavirus_civet007 TGTGACTTGAAAGGTAAGTACGTCCAAATACCTACCACTTGTGCTAATGACCCAGTGGGT
SARS_coronavirus_GZ50 TGTGACTTGAAAGGTAAGTACGTCCAAATACCTACCACTTGTGCTAATGACCCAGTGGGT
SARS_coronavirus_Taiwan_TC1 TGTGACTTGAAAGGTAAGTACGTCCAAATACCTACCACTTGTGCTAATGACCCAGTGGGT
Bat_coronavirus_(BtCoV/273/2005) TGTGACcTGAAAGGTAAGTAtGTtCAAATACCTACCACcTGTGCTAATGACCCAGTGGGT
BtRf-BetaCoV/HeB2013 TGTGACcTGAAAGGTAAGTAtGTtCAAATACCTACCACcTGTGCTAATGACCCAGTGGGT
SARS_CORONAVIRUS cTTAC---------------CaGTACCaggtgGTCcctGGAgTGTaGAAtacTTtTGcaT
Severe_acute_respiratory_syndrom TTTACACTTAaAAACACAGTCTGTACC-----GTCTGCGGtATGTGGAAAGGTTATGGCT
SARS_coronavirus_civet007 TTTACACTTAGAAACACAGTCTGTACC-----GTCTGCGGAATGTGGAAAGGTTATGGCT
SARS_coronavirus_GZ50 TTTACACTTAGAAACACAGTCTGTACC-----GTCTGCGGAATGTGGAAAGGTTATGGCT
SARS_coronavirus_Taiwan_TC1 TTTACACTTAGAAACACAGTCTGTACC-----GTCTGCGGAATGTGGAAAGGTTATGGCT
Bat_coronavirus_(BtCoV/273/2005) TTcACACTTAGAAACACAGTCTGTACt-----GTCTGCGGAATGTGGAAAGGTTATGGtT
BtRf-BetaCoV/HeB2013 TTcACACTTAGAAACACAGTCTGTACt-----GTCTGCGGAATGTGGAAAGGTTATGGCT
SARS_CORONAVIRUS ---------ACCAACcttttGAtaatTTGcaaCAttGctaGaaaActCATCtgaGaTaTT
Severe_acute_respiratory_syndrom GTAGTTGTGAtCAACTCCGCGAACCCaTGcTtCA--GTCaGCtGATGCAcaAtCGTTTTT
SARS_coronavirus_civet007 GTAGTTGTGACCAACTCCGCGAACCCTTGATGCA--GTCTGCGGATGCATCAACGTTTTT
SARS_coronavirus_GZ50 GTAGTTGTGACCAACTCCGCGAACCCTTGATGCA--GTCTGCGGATGCATCAACGTTTTT
SARS_coronavirus_Taiwan_TC1 GTAGTTGTGACCAACTCCGCGAACCCTTGATGCA--GTCTGCGGATGCATCAACGTTTTT
Bat_coronavirus_(BtCoV/273/2005) GTAGTTGTGACCAACTCCGCGAACCCaTGATGCA--GTCgGCGGATGCgTCAcCGTTTTT
BtRf-BetaCoV/HeB2013 GTAGTTGTGAtCAACTCCGCGAACCCaTGATGCA--GTCTGCGGATGCgTCAgCGTTTTT
SARS_CORONAVIRUS ----GaGTgTtgGGTaTAAGc-CAGtaatTCTaACAtaGTGCtcttgtGGCACTAGTgta
Severe_acute_respiratory_syndrom AAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGTACT
SARS_coronavirus_civet007 AAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGTACT
SARS_coronavirus_GZ50 AAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGTACT
SARS_coronavirus_Taiwan_TC1 AAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGTACT
Bat_coronavirus_(BtCoV/273/2005) AAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGcACT
BtRf-BetaCoV/HeB2013 AAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCACAGGCACTAGcACT
SARS_CORONAVIRUS GgTG-CactTAatGGcaTTactgTATgT-----------GaTGtcaGcacaaaAtAaTca
Severe_acute_respiratory_syndrom GATGTCGTaTACAGGGCTTTTGAcATcTACAAtGAtAAAGTaGCTGGTTTTGCtAAaTTC
SARS_coronavirus_civet007 GATGTCGTCTACAGGGCTTTTGATATTTACAACGAAAAAGTTGCTGGTTTTGCAAAGTTC
SARS_coronavirus_GZ50 GATGTCGTCTACAGGGCTTTTGATATTTACAACGAAAAAGTTGCTGGTTTTGCAAAGTTC
SARS_coronavirus_Taiwan_TC1 GATGTCGTCTACAGGGCTTTTGATATTTACAACGAAAAAGTTGCTGGTTTTGCAAAGTTC
Bat_coronavirus_(BtCoV/273/2005) GATGTCGTtTACAGGGCTTTTGAcATcTACAACGAAAAgGTTGCTGGTTTTGCAAAGTTC
BtRf-BetaCoV/HeB2013 GATGTCGTtTACAGGGCTTTTGATATTTACAACGAAAAgGTTGCTGGTTTTGCAAAGTTC
SARS_CORONAVIRUS CcAAcAttTAATTtgtaaGtTGTtGtacCtcGGtaAAcaAc-AGcAtcaccatAGtCAcc
Severe_acute_respiratory_syndrom CTAAAAACTAATT-----GtTGTCGCTTCCAaGAaAAGGAcGAaGA-------tGaCAAT
SARS_coronavirus_civet007 CTAAAAACTAATT-----GCTGTCGCTTCCAGGAGAAGGATGAGGA-------AGGCAAT
SARS_coronavirus_GZ50 CTAAAAACTAATT-----GCTGTCGCTTCCAGGAGAAGGATGAGGA-------AGGCAAT
SARS_coronavirus_Taiwan_TC1 CTAAAAACTAATT-----GCTGTCGCTTCCAGGAGAAGGATGAGGA-------AGGCAAT
Bat_coronavirus_(BtCoV/273/2005) CTAAAAACTAATT-----GCTGcCGaTTCCAGGAGAAGGATGAGGA-------AGGCAAT
BtRf-BetaCoV/HeB2013 CTAAAAACTAATT-----GCTGcCGaTTCCAaGAGAAGGATGAaGA-------AGGCAAT
SARS_CORONAVIRUS TTtTTcaAaggtgtactCTCcTA-TTTGTAcTT--------TACTgTtTtTAgtTACacg
Severe_acute_respiratory_syndrom TTAaTtGA---------tTCTTACTTTGTAGTTAAGAGACAcACTtTcTCTAACTAC---
SARS_coronavirus_civet007 TTATTAGA---------CTCTTACTTTGTAGTTAAGAGgCATACTATGTCTAACTAC---
SARS_coronavirus_GZ50 TTATTAGA---------CTCTTACTTTGTAGTTAAGAGgCATACTATGTCTAACTAC---
SARS_coronavirus_Taiwan_TC1 TTATTAGA---------CTCTTACTTTGTAGTTAAGAGgCATACTATGTCTAACTAC---
Bat_coronavirus_(BtCoV/273/2005) TTAaTAGA---------CTCTTAtTTcGTAGTTAAGAGACATACTATGTCcAACTAC---
BtRf-BetaCoV/HeB2013 TTAaTAGA---------CTCTTAtTTcGTAGTTAAGAGACATACTATGTCcAACTAC---
SARS_CORONAVIRUS atAACcaGtAaAGAC-----ATAAtTTcGGTTAAgtGgTgGTCtAGgtttaCcaTTtCaa
Severe_acute_respiratory_syndrom -CAACATGAAGAaACaATTTATAAtTT-acTTAAg-GATTGTCCAG-----CtGTTGCTa
SARS_coronavirus_civet007 -CAACATGAAGAGACTATTTATAACTT-GGTTAAA-GATTGTCCAG-----CgGTTGCTG
SARS_coronavirus_GZ50 -CAACATGAAGAGACTATTTATAACTT-GGTTAAA-GATTGTCCAG-----CgGTTGCTG
SARS_coronavirus_Taiwan_TC1 -CAACATGAAGAGACTATTTATAACTT-GGTTAAA-GATTGTCCAG-----CgGTTGCTG
Bat_coronavirus_(BtCoV/273/2005) -CAgCATGAAGAGgCTATTTAcAACTT-GcTTAAA-GAgTGcCCAG-----CtGTTGCTG
BtRf-BetaCoV/HeB2013 -CAgCATGAAGAGgCTATTTAcAACTT-GcTTAAA-GAgTGcCCAG-----CtGTTGCTG
SARS_CORONAVIRUS TaCAaG----cacCAAGgTcAcgG-----GGTGtCATGtTttCAacTtTgTtAtagGTgA
Severe_acute_respiratory_syndrom aaCATGACTTcTTtAAGTTTAGAaTAGAcGGTGACATGGTACCACATATATCAC--GTCA
SARS_coronavirus_civet007 TCCATGACTTTTTCAAGTTTAGAGTAGATGGTGACATGGTACCACATATATCAC--GTCA
SARS_coronavirus_GZ50 TCCATGACTTTTTCAAGTTTAGAGTAGATGGTGACATGGTACCACATATATCAC--GTCA
SARS_coronavirus_Taiwan_TC1 TCCATGACTTTTTCAAGTTTAGAGTAGATGGTGACATGGTACCACATATATCAC--GTCA
Bat_coronavirus_(BtCoV/273/2005) TgCATGACTTTTTCAAGTTTAGAGTAGATGGTGACATGGTACCACATATATCAC--GTCA
BtRf-BetaCoV/HeB2013 TgCATGACTTTTTCAAGTTTAGAGTAGATGGTGACATGGTACCACATATATCAC--GTCA
SARS_CORONAVIRUS GCaTaTAgtTAttacaACtATcGCcag-------TAactTCTAtGTCAgaTTGATG-tGa
Severe_acute_respiratory_syndrom aCGTCTtACTAAATACACAATGGCAGACcTcGTCTATGCTtTAaGgCATTTTGATGAaGG
SARS_coronavirus_civet007 GCGTCTAACTAAATACACAATGGCtGAtTTAGTCTATGCgCTACGTCATTTTGATGAGGG
SARS_coronavirus_GZ50 GCGTCTAACTAAATACACAATGGCtGAtTTAGTCTATGCTCTACGTCATTTTGATGAGGG
SARS_coronavirus_Taiwan_TC1 GCGTCTAACTAAATACACAATGGCtGAtTTAGTCTATGCTCTACGTCATTTTGATGAGGG
Bat_coronavirus_(BtCoV/273/2005) aCGTCTAACTAAgTACACAATGGCAGACTTAGTCTATGCTCTACGTCATTTTGAcGAGGG
BtRf-BetaCoV/HeB2013 aCGTCTAACTAAgTACACAATGGCAGACTTAGTCTATGCTCTACGTCATTTTGAcGAGGG
SARS_CORONAVIRUS cAATT-TaAgACATTcAAcaAcATctTtagtttctaCaTCtgaatcaACAaACccTTGCc
Severe_acute_respiratory_syndrom TAATTGTGACACATTAAAAGAAATACT---------tGTC-------ACATACAATTGtT
SARS_coronavirus_civet007 TAATTGTGAtACATTAAAAGAAATACT---------CGTC-------ACgTACAATTGCT
SARS_coronavirus_GZ50 TAATTGTGAtACATTAAAAGAAATACT---------CGTC-------ACATACAATTGCT
SARS_coronavirus_Taiwan_TC1 TAATTGTGAtACATTAAAAGAAATACT---------CGTC-------ACATACAATTGCT
Bat_coronavirus_(BtCoV/273/2005) cAATTGTGACACATTAAAgGAAATACT---------CGTC-------ACATACAATTGtT
BtRf-BetaCoV/HeB2013 cAATTGTGACACATTAAAgGAAATACT---------CGTC-------ACATACAATTGtT
SARS_CORONAVIRUS GaGcTGcTGA----------AAtAAaagTaGaTAaGACaTTGTctAAggaC---ACATtc
Severe_acute_respiratory_syndrom GTGATGATGATTATTTCAATAAaAAGGAcTGGTATGAtTTTGTAGAAAAcCCaGAtATaT
SARS_coronavirus_civet007 GTGATGATGATTATTTCAATAAGAAGGATTGGTATGACTTcGTAGAgAATCCTGACATCT
SARS_coronavirus_GZ50 GTGATGATGATTATTTCAATAAGAAGGATTGGTATGACTTcGTAGAgAATCCTGACATCT
SARS_coronavirus_Taiwan_TC1 GTGATGATGATTATTTCAATAAGAAGGATTGGTATGACTTcGTAGAgAATCCTGACATCT
Bat_coronavirus_(BtCoV/273/2005) GTGgTGAcGATTATTTCAATAAGAAGGATTGGTATGACTTTGTAGAAAATCCTGACATCc
BtRf-BetaCoV/HeB2013 GTGATGAcGATTATTTCAATAAGAAGGATTGGTATGACTTTGTAGAAAAcCCTGACATCc
SARS_CORONAVIRUS TttGCa-------------AGtTcAGCtTcTg---CAgTtgcaAcTAgtG-tTtTgagtT
Severe_acute_respiratory_syndrom TACGCGTATAcGCcAACTTAGGTGAaCGTGTACGCCAAgCtTTgTTAAAaACaGTACAAT
SARS_coronavirus_civet007 TACGCGTATATGCTAACTTAGGTGAGCGTGTACGCCAATCATTATTAAAGACTGTACAAT
SARS_coronavirus_GZ50 TACGCGTATATGCTAACTTAGGTGAGCGTGTACGCCAATCATTATTAAAGACTGTACAAT
SARS_coronavirus_Taiwan_TC1 TACGCGTATATGCTAACTTAGGTGAGCGTGTACGCCAATCATTATTAAAGACTGTACAAT
Bat_coronavirus_(BtCoV/273/2005) TgCGCGTATATGCaAACcTtGGTGAGCGTGTACGtCAAgCtTTATTAAAGACTGTgCAAT
BtRf-BetaCoV/HeB2013 TgCGCGTATATGCaAACcTtGGTGAGCGTGTACGtCAAgCtTTATTAAAGACTGTgCAAT
SARS_CORONAVIRUS TtTcCatTGgTAcGttaaAaGttGa---TGaAaaCGTAtTaACgTaAG--cATCAaacAT
Severe_acute_respiratory_syndrom TCTGtGATGCcATGCGaaATGCtGGtATTGTtGGtGTACTGACATTAGATAATCAaG-AT
SARS_coronavirus_civet007 TCTGCGATGCTATGCGTGATGCAGGCATTGTAGGCGTACTGACATTAGATAATCAGG-AT
SARS_coronavirus_GZ50 TCTGCGATGCTATGCGTGATGCAGGCATTGTAGGCGTACTGACATTAGATAATCAGG-AT
SARS_coronavirus_Taiwan_TC1 TCTGCGATGCTATGCGTGATGCAGGCATTGTAGGCGTACTGACATTAGATAATCAGG-AT
Bat_coronavirus_(BtCoV/273/2005) TCTGCGATGCcATGCGcGATGCgGGCATcGTAGGtGTACTGACAcTAGATAATCAGG-AT
BtRf-BetaCoV/HeB2013 TCTGCGATGCcATGCGcGATGCgGGtATcGTAGGtGTACTGACAcTAGATAATCAGG-AT
SARS_CORONAVIRUS tTTAActGcAACTtccgCacTaTCaccaAcaTCagACActaatgcctgatctAGTAaCAg
Severe_acute_respiratory_syndrom CTcAATGGtAACTGGTAtGATTTCGGTGATTTCaTACA--------------AaccaCg-
SARS_coronavirus_civet007 CTTAATGGGAACTGGTACGATTTCGGTGATTTCGTACA--------------AGTAGCA-
SARS_coronavirus_GZ50 CTTAATGGGAACTGGTACGATTTCGGTGATTTCGTACA--------------AGTAGCA-
SARS_coronavirus_Taiwan_TC1 CTTAATGGGAACTGGTACGATTTCGGTGATTTCGTACA--------------AGTAGCA-
Bat_coronavirus_(BtCoV/273/2005) CTgAATGGGAACTGGTACGATTTtGGTGATTTCGTgCA--------------AGTAGCA-
BtRf-BetaCoV/HeB2013 CTgAATGGGAACTGGTACGATTTCGGTGATTTCGTgCA--------------AGTAGCA-
SARS_CORONAVIRUS tatAGGtTGacacataagcTgaCTgTaGTaaAcagAcgcTgaTt-TTGCaGATGatTcTt
Severe_acute_respiratory_syndrom -CCAGGtaG-----tGGAGTTCCTgTTGTaGATTCtTATTAtTCATTGtTaATGCCTATa
SARS_coronavirus_civet007 -CCAGGCTG-----CGGAGTTCCTATTGTGGATTCATATTACTCATTGCTGATGCCcATC
SARS_coronavirus_GZ50 -CCAGGCTG-----CGGAGTTCCTATTGTGGATTCATATTACTCATTGCTGATGCCcATC
SARS_coronavirus_Taiwan_TC1 -CCAGGCTG-----CGGAGTTCCTATTGTGGATTCATATTACTCATTGCTGATGCCcATC
Bat_coronavirus_(BtCoV/273/2005) -CCAGGCTG-----CGGAGTTCCTATTGTGGATTCATAcTAtTCtTTGCTGATGCCTATt
BtRf-BetaCoV/HeB2013 -CCAGGCTG-----CGGAGTTCCTATTGTGGATTCATAcTAtTCtTTGCTGATGCCTATt
SARS_CORONAVIRUS CaCAtTTTGA--------TTtaCcatcaAaaaCtATA---ACatTaATag-GCAAtgAAC
Severe_acute_respiratory_syndrom tTaACcTTGACcAGGGCtTTAaCTGCaGAGTCaCATgTtGACaCTGActTaaCAA--AgC
SARS_coronavirus_civet007 CTCACTTTGACtAGaGCATTgGCTGCTGAGTCCCATATGGAtGCTGATCTCGCAA--AAC
SARS_coronavirus_GZ50 CTCACTTTGACtAGGGCATTgGCTGCTGAGTCCCATATGGAtGCTGATCTCGCAA--AAC
SARS_coronavirus_Taiwan_TC1 CTCACTTTGACtAGGGCATTgGCTGCTGAGTCCCATATGGAtGCTGATCTCGCAA--AAC
Bat_coronavirus_(BtCoV/273/2005) CTCACacTaACgAGGGCtTTAGCTGCTGAGTCCCATATGGACGCTGATCTCaCAA--AAC
BtRf-BetaCoV/HeB2013 CTCACacTaACgAGGGCtTTAGCTGCTGAGTCCCATATGGACGCTGATCTCaCAA--AAC
SARS_CORONAVIRUS C-----TTtAGTGttATTaGCTctcagGttgTcTaAgTTaACaaAatgAGAGAGAgaaTG
Severe_acute_respiratory_syndrom CttaCATTAAGTGGGATTTGtT-----aAAATATGACTTcACGGA---AGAGAGgtTaaa
SARS_coronavirus_civet007 CACTtATTAAGTGGGATTTGCT-----GAAATATGAtTTTACGGA---AGAGAGACTTTG
SARS_coronavirus_GZ50 CACTtATTAAGTGGGATTTGCT-----GAAATATGAtTTTACGGA---AGAGAGACTTTG
SARS_coronavirus_Taiwan_TC1 CACTtATTAAGTGGGATTTGCT-----GAAATATGAtTTTACGGA---AGAGAGACTTTG
Bat_coronavirus_(BtCoV/273/2005) CACTCATTAAGTGGGATTTGtT-----GAAATATGACTTTACGGA---AGAGAGACTcTG
BtRf-BetaCoV/HeB2013 CACTCATTAAGTGGGATTTGtT-----GAAATATGACTTTACGGA---AGAGAGACTcTG
SARS_CORONAVIRUS TCTtTca-----------TAAgTcTTttGACCAGcttTAtCA----AAgT----------
Severe_acute_respiratory_syndrom aCTCTTtGACCGTTATTTTAAATATTGGGAtCAGACATACCACCCaAATTGTgTTAACTG
SARS_coronavirus_civet007 TCTCTTCGACCGTTATTTTAAATATTGGGACCAGACATACCAtCCCAATTGTATTAACTG
SARS_coronavirus_GZ50 TCTCTTCGACCGTTATTTTAAATATTGGGACCAGACATACCAtCCCAATTGTATTAACTG
SARS_coronavirus_Taiwan_TC1 TCTCTTCGACCGTTATTTTAAATATTGGGACCAGACATACCAtCCCAATTGTATTAACTG
Bat_coronavirus_(BtCoV/273/2005) TCTCTTCGACCGTTAcTTTAAATATTGGGAtCAGACATACCACCCCAATTGTAccAACTG
BtRf-BetaCoV/HeB2013 TCTCTTCGACCGTTAcTTTAAATATTGGGAtCAGACATACCACCCCAATTGTATTAACTG
SARS_CORONAVIRUS ----aAaGATgGaTGgAaCC-------------------------ATTcTtcACTGTaac
Severe_acute_respiratory_syndrom TTTGGATGAcAGaTGcATtCTgCATTGTGCAAACTTTAATGTtTTATTcTCTACaGTGTT
SARS_coronavirus_civet007 TTTGGATGATAGGTGTATCCTTCATTGcGCAAACTTTAATGTGTTATTTTCTACTGTGTT
SARS_coronavirus_GZ50 TTTGGATGATAGGTGTATCCTTCATTGTGCAAACTTTAATGTGTTATTTTCTACTGTGTT
SARS_coronavirus_Taiwan_TC1 TTTGGATGATAGGTGTATCCTTCATTGTGCAAACTTTAATGTGTTATTTTCTACTGTGTT
Bat_coronavirus_(BtCoV/273/2005) TTTGGATGATAGGTGTATCCTcCATTGTGCAAACTTTAATGTaTTgTTTTCTACTGTGTT
BtRf-BetaCoV/HeB2013 TTTGGATGATAGGTGTATCCTcCATTGTGCAAACTTTAATGTaTTgTTTTCTACTGTGTT
SARS_CORONAVIRUS aCtAtCaACgA-TgTaaGAagACTgGTcAGtAggATtTaT--------TGgTCtTTTaaa
Severe_acute_respiratory_syndrom CCCACCTACAAGTTTTGGACCACTAGTgAGAAAAATATTTGTtGATGGTGTTCCaTT---
SARS_coronavirus_civet007 tCCACCTACAAGTTTTGGACCACTAGTAAGAAAAATATTTGTAGATGGTGTTCCTTT---
SARS_coronavirus_GZ50 tCCACCTACAAGTTTTGGACCACTAGTAAGAAAAATATTTGTAGATGGTGTTCCTTT---
SARS_coronavirus_Taiwan_TC1 tCCACCTACAAGTTTTGGACCACTAGTAAGAAAAATATTTGTAGATGGTGTTCCTTT---
Bat_coronavirus_(BtCoV/273/2005) CCCACCTACAAGcTTTGGACCAtTAGTAAGgAAAATATTTGTAGATGGTGTaCCTTT---
BtRf-BetaCoV/HeB2013 CCCACCTACAAGcTTTGGACCAtTAGTAAGgAAAATATTTGTAGATGGTGTaCCTTT---
SARS_CORONAVIRUS cTGTaGTgaCAAgTctcTcgCAacTTCaTcAcTaaTAaatGTacTACcagcaCAGaATGT
Severe_acute_respiratory_syndrom -TGTaGTTTCAACTGGATACCAcTTcaGaGAGc--TAGGtGTtGTACATAATCAGGATGT
SARS_coronavirus_civet007 -TGTTGTTTCAACTGGATACCATTTTCGTGAGT--TAGGAGTCGTACATAATCAGGATGT
SARS_coronavirus_GZ50 -TGTTGTTTCAACTGGATACCATTTTCGTGAGT--TAGGAGTCGTACATAATCAGGATGT
SARS_coronavirus_Taiwan_TC1 -TGTTGTTTCAACTGGATACCATTTTCGTGAGT--TAGGAGTCGTACATAATCAGGATGT
Bat_coronavirus_(BtCoV/273/2005) -TGTTGTTTCAACgGGtTACCATTTcCGTGAGT--TAGGAGTtGTACATAATCAGGATGT
BtRf-BetaCoV/HeB2013 -TGTTGTTTCAACaGGtTACCATTTcCGTGAGT--TAGGAGTtGTACATAATCAGGATGT
SARS_CORONAVIRUS AtcacAAtTaACAcAatTCcaaTtgtgtAGTTTgcAaaAgCcTTTA----cctCcatTag
Severe_acute_respiratory_syndrom A----AACTTACATAGCTCtaGa--CTtAGTTTtAAGGAAtTacTtGTGTATGCTGCTGA
SARS_coronavirus_civet007 A----AACTTACATAGCTCGCGT--CTCAGTTTCAAGGAACTTTTAGTGTATGCTGCTGA
SARS_coronavirus_GZ50 A----AACTTACATAGCTCGCGT--CTCAGTTTCAAGGAACTTTTAGTGTATGCTGCTGA
SARS_coronavirus_Taiwan_TC1 A----AACTTACATAGCTCGCGT--CTCAGTTTCAAGGAACTTTTAGTGTATGCTGCTGA
Bat_coronavirus_(BtCoV/273/2005) A----AACTTACATAGCTCaCGT--CTCAGTTTtAAGGAACTTTTAGTGTATGCcGCTGA
BtRf-BetaCoV/HeB2013 A----AACTTACATAGCTCaCGT--CTCAGTTTtAAGGAACTTTTAGTGTATGCcGCTGA
SARS_CORONAVIRUS CatAGacATaaAaGgAcCTTCTaaCA--ccATTa----AcAAtaGttgTACATtCgacTC
Severe_acute_respiratory_syndrom CCCtGCTATGCAcGCtGCTTCTGGtAATcTATTaCTAGATAAACGCACTACgTGCTTTTC
SARS_coronavirus_civet007 tCCAGCTATGCATGCAGCTTCTGGCAATTTATTGCTAGATAAACGCACTACATGCTTTTC
SARS_coronavirus_GZ50 tCCAGCTATGCATGCAGCTTCTGGCAATTTATTGCTAGATAAACGCACTACATGCTTTTC
SARS_coronavirus_Taiwan_TC1 tCCAGCTATGCATGCAGCTTCTGGCAATTTATTGCTAGATAAACGCACTACATGCTTTTC
Bat_coronavirus_(BtCoV/273/2005) CCCAGCcATGCATGCAGCTTCTGGCAATTTATTGCTAGAcAAACGCACTACATGCTTTTC
BtRf-BetaCoV/HeB2013 CCCAGCcATGCATGCAGCTTCTGGCAATTTATTGCTAGAcAAACGCACTACATGCTTTTC
SARS_CORONAVIRUS --TtGtTGCtCTA----------TTaCgTTTgtAACacaTCAtACaaGtTgA--TgAATt
Severe_acute_respiratory_syndrom AGTAGCTGCACTtACtAACAATGTTGCTTTTCAAAC-TGTCAAACCCGGTAATTTTAAcA
SARS_coronavirus_civet007 AGTAGCTGCACTAACAAACAATGTTGCTTTTCAAAC-TGTCAAACCCGGTAATTTTAATA
SARS_coronavirus_GZ50 AGTAGCTGCACTAACAAACAATGTTGCTTTTCAAAC-TGTCAAACCCGGTAATTTTAATA
SARS_coronavirus_Taiwan_TC1 AGTAGCTGCACTAACAAACAATGTTGCTTTTCAAAC-TGTCAAACCCGGTAATTTTAATA
Bat_coronavirus_(BtCoV/273/2005) AGTgGCTGCACTAACAAACAATGTctCTTTTCAAAC-TGTCAAACCCGGTAATTTTAATA
BtRf-BetaCoV/HeB2013 AGTgGCTGCACTAACAAACAATGTctCTTTTCAAAC-TGTCAAACCCGGTAATTTTAATA
SARS_CORONAVIRUS AcaACcgTctacaacatgcacATaACTTTtCcaTacaTAAtaaaaTgaTgcAaagAaGAt
Severe_acute_respiratory_syndrom AAGACTTc------------TATGACTTTGCTGTGTCTAAgGGTTTCTTTAAGGAAGGAA
SARS_coronavirus_civet007 AAGACTTT------------TATGACTTTGCTGTGTCTAAAGGTTTCTTTAAGGAAGGAA
SARS_coronavirus_GZ50 AAGACTTT------------TATGACTTTGCTGTGTCTAAAGGTTTCTTTAAGGAAGGAA
SARS_coronavirus_Taiwan_TC1 AAGACTTT------------TATGACTTTGCTGTGTCTAAAGGTTTCTTTAAGGAAGGAA
Bat_coronavirus_(BtCoV/273/2005) AgGACTTT------------TATGACTTTGCTGTGTCTAAAGGcTTCTTTAAGGAAGGAA
BtRf-BetaCoV/HeB2013 AgGACTTT------------TATGACTTTGCTGTGTCTAAAGGcTTCTTTAAGGAAGGAA
SARS_CORONAVIRUS GTaCatTctAACcAtAgC-------------------TGaaAtCGggGCcATttGTacaa
Severe_acute_respiratory_syndrom GTTCTGTTGAAtTAAAACACTTCTTCTTTGCTCAGGATGGtAAtGCTGCTATCAGc----
SARS_coronavirus_civet007 GTTCTGTTGAACTAAAACACTTCTTCTTTGCTCAGGATGGCAACGCTGCTATCAGT----
SARS_coronavirus_GZ50 GTTCTGTTGAACTAAAACACTTCTTCTTTGCTCAGGATGGCAACGCTGCTATCAGT----
SARS_coronavirus_Taiwan_TC1 GTTCTGTTGAACTAAAACACTTCTTCTTTGCTCAGGATGGCAACGCTGCTATCAGT----
Bat_coronavirus_(BtCoV/273/2005) GTTCTGTTGAACTAAAACACTTCTTCTTTGCTCAGGATGGCAAtGCTGCTATCAGc----
BtRf-BetaCoV/HeB2013 GTTCTGTTGAACTAAAACACTTCTTCTTTGCTCAGGATGGCAAtGCTGCTATtAGc----
SARS_CORONAVIRUS GATTA--AtTATTAaCcacATAAgCcaagaatTaCtAAtAAaaTGTacTgcaAaAtAgCT
Severe_acute_respiratory_syndrom GATTATGACTAcTATCGTTATAATC-------TaCCAACAATGTGTGATATCAGACAACT
SARS_coronavirus_civet007 GATTATGACTATTATCGTTATAATC-------TGCCAACAATGTGTGATATCAGACAACT
SARS_coronavirus_GZ50 GATTATGACTATTATCGTTATAATC-------TGCCAACAATGTGTGATATCAGACAACT
SARS_coronavirus_Taiwan_TC1 GATTATGACTATTATCGTTATAATC-------TGCCAACAATGTGTGATATCAGACAACT
Bat_coronavirus_(BtCoV/273/2005) GATTATGACTATTATCGTTATAATC-------TGCCAACAATGTGTGATATCAGACAACT
BtRf-BetaCoV/HeB2013 GATTATGACTATTATCGTTATAATC-------TGCCAACAATGTGTGATATCAGACAACT
SARS_CORONAVIRUS gaaaaaCaATTgCaTgaTTGcAGccaaT-ccAAGTACaTaGAaaaacctagTGaaaagaa
Severe_acute_respiratory_syndrom -----aCTATT-tGTAGTTGAAGTTGTTGATAAGTACTTTGATTGTTACGATGGTGGCTG
SARS_coronavirus_civet007 -----CCTATT-CGTAGTTGAAGTTGTTGATAAaTACTTTGATTGTTACGATGGTGGCTG
SARS_coronavirus_GZ50 -----CCTATT-CGTAGTTGAAGTTGTTGATAAaTACTTTGATTGTTACGATGGTGGCTG
SARS_coronavirus_Taiwan_TC1 -----CCTATT-CGTAGTTGAAGTTGTTGATAAaTACTTTGATTGTTACGATGGTGGCTG
Bat_coronavirus_(BtCoV/273/2005) -----CCTATT-CGTAGTTGAAGTTGTTGATAAGTACTTTGATTGTTACGATGGTGGCTG
BtRf-BetaCoV/HeB2013 -----CCTATT-CGTAGTTGAAGTTGTTGATAAGTACTTTGATTGTTACGATGGTGGCTG
SARS_CORONAVIRUS TAT--ATGCCAA-aAAccAcTCtgcAACtAAgCca---AAAgCAGtTaaa-TCCCATTTA
Severe_acute_respiratory_syndrom TATTAATGCtAACCAAGTcATCGTcAAC-AAcCTaGAcAAATCAGCTGGTTTtCCATTTA
SARS_coronavirus_civet007 TATTAATGCCAACCAAGTAATCGTTAAC-AATCTGGATAAATCAGCTGGTTTCCCATTTA
SARS_coronavirus_GZ50 TATTAATGCCAACCAAGTAATCGTTAAC-AATCTGGATAAATCAGCTGGTTTCCCATTTA
SARS_coronavirus_Taiwan_TC1 TATTAATGCCAACCAAGTAATCGTTAAC-AATCTGGATAAATCAGCTGGTTTCCCATTTA
Bat_coronavirus_(BtCoV/273/2005) TATTAATGCtAACCAAGTAATCGTaAAC-AATCTGGATAAATCAGCTGGaTTtCCATTTA
BtRf-BetaCoV/HeB2013 TATTAATGCtAACCAAGTAATCGTaAAC-AATCTGGATAAATCAGCTGGaTTtCCATTTA
SARS_CORONAVIRUS AaAgATGa---AAtGgTAattTgTATagTttCTaA-------AgaAGGAT--AGgTG---
Severe_acute_respiratory_syndrom ATAAATGGGGTAAGGCTAGACTTTATTATGAtTCAATGAGTTATGAGGATCAAGATGCAC
SARS_coronavirus_civet007 ATAAATGGGGTAAGGCTAGACTTTATTATGACTCAATGAGTTATGAGGATCAAGATGCAC
SARS_coronavirus_GZ50 ATAAATGGGGTAAGGCTAGACTTTATTATGACTCAATGAGTTATGAGGATCAAGATGCAC
SARS_coronavirus_Taiwan_TC1 ATAAATGGGGTAAGGCTAGACTTTATTATGACTCAATGAGTTATGAGGATCAAGATGCAC
Bat_coronavirus_(BtCoV/273/2005) ATAAATGGGGTAAGGCTAGgCTTTATTATGAtTCAATGAGTTATGAGGAcCAAGATGCAC
BtRf-BetaCoV/HeB2013 AcAAATGGGGTAAGGCTAGgCTTTATTATGAtTCAATGAGTTATGAGGATCAAGATGCAC
SARS_CORONAVIRUS ----------------------------------------TCtAAaGAATCTaAAccAct
Severe_acute_respiratory_syndrom TTTTCGCaTATACaAAaCGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAGTAT-
SARS_coronavirus_civet007 TTTTCGCGTATACTAAGCGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAGTAT-
SARS_coronavirus_GZ50 TTTTCGCGTATACTAAGCGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAGTAT-
SARS_coronavirus_Taiwan_TC1 TTTTCGCGTATACTAAGCGTAATGTCATCCCTACTATAACTCAAATGAATCTTAAGTAT-
Bat_coronavirus_(BtCoV/273/2005) TTTTCGCGTAcACTAAGCGTAAcGTCcTCCCTACTATAACTCAAATGAATCTTAAGTAT-
BtRf-BetaCoV/HeB2013 TTTTCGCGTAcACTAAGCGTAATGTCcTCCCTACTATAACTCAAATGAATCTTAAGTAT-
SARS_CORONAVIRUS aagaCaAacAcTaCAAgGtATAGAaCcaGtACaGTAGgT------------TGcAaTAgT
Severe_acute_respiratory_syndrom ---GCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTCTCTATCTGTAGTACT
SARS_coronavirus_civet007 ---GCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTCTCTATCTGTAGTACT
SARS_coronavirus_GZ50 ---GCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTCTCTATCTGTAGTACT
SARS_coronavirus_Taiwan_TC1 ---GCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTCTCTATCTGTAGTACT
Bat_coronavirus_(BtCoV/273/2005) ---GCCATTAGTGCAAAGAATAGAGCTCGCACtGTAGCaGGTGTCTCTATCTGTAGTACT
BtRf-BetaCoV/HeB2013 ---GCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCaGGTGTCTCTATCTGTAGTACT
SARS_CORONAVIRUS gacAttAgTAGA---gTTCAggAtcAgTTgTgtggtaGtAcTCAAaAGCCtCaACacGta
Severe_acute_respiratory_syndrom ATGACcAATAGACAGTTTCATCAaAAATTATT-----GAAaTCAATAGCCGCCACTAGAG
SARS_coronavirus_civet007 ATGACAAATAGACAGTTTCATCAGAAATTATT-----GAAGTCAATAGCCGCCACTAGAG
SARS_coronavirus_GZ50 ATGACAAATAGACAGTTTCATCAGAAATTATT-----GAAGTCAATAGCCGCCACTAGAG
SARS_coronavirus_Taiwan_TC1 ATGACAAATAGACAGTTTCATCAGAAATTATT-----GAAGTCAATAGCCGCCACTAGAG
Bat_coronavirus_(BtCoV/273/2005) ATGACcAATAGACAGTTTCATCAGAAATTAcT-----aAAGTCAATAGCCGCCACTAGAG
BtRf-BetaCoV/HeB2013 ATGACcAATAGACAGTTTCATCAGAAATTAcT-----aAAGTCAATAGCCGCCACTAGAG
SARS_CORONAVIRUS GAGtgtCatcAtTAggTaaAACAtAaaAtGTTTTACctTcatgtGaATtATgaGgT----
Severe_acute_respiratory_syndrom GAGCTACTGTAGTAATTGGAACA-AGCAAaTTcTAtGGTGGtTGGCAcAAcATGTTAAAA
SARS_coronavirus_civet007 GAGCTACTGTgGTAATTGGAACA-AGCAAGTTTTACGGTGGCTGGCATAATATGTTAAAA
SARS_coronavirus_GZ50 GAGCTACTGTgGTAATTGGAACA-AGCAAGTTTTACGGTGGCTGGCATAATATGTTAAAA
SARS_coronavirus_Taiwan_TC1 GAGCTACTGTgGTAATTGGAACA-AGCAAGTTTTACGGTGGCTGGCATAATATGTTAAAA
Bat_coronavirus_(BtCoV/273/2005) GAGCTACTGTAGTAATTGGAACA-AGCAAaTTTTACGGTGGCTGGCATAAcATGTTAAAA
BtRf-BetaCoV/HeB2013 GAGCTACTGTAGTAATTGGAACA-AGCAAaTTTTACGGTGGCTGGCATAAcATGTTAAAA
SARS_CORONAVIRUS -tTtaTTttAGTaAcaT--cAgCTCCAt-CCaaATaaGTTGGa-----CCAAAcTGttgt
Severe_acute_respiratory_syndrom ACTGTTTAtAGTGATGTAGAAAacCCtCACCTTATGGGTTGGGATTATCCtAAATG----
SARS_coronavirus_civet007 ACTGTTTACAGTGATGTAGAAACTCCACACCTTATGGGTTGGGATTATCCAAAATG----
SARS_coronavirus_GZ50 ACTGTTTACAGTGATGTAGAAACTCCACACCTTATGGGTTGGGATTATCCAAAATG----
SARS_coronavirus_Taiwan_TC1 ACTGTTTACAGTGATGTAGAAACTCCACACCTTATGGGTTGGGATTATCCAAAATG----
Bat_coronavirus_(BtCoV/273/2005) ACTGTcTACAGTGATGTAGAAAaTCCcCACCTTATGGGTTGGGAcTATCCAAAgTG----
BtRf-BetaCoV/HeB2013 ACTGTcTACAGTGATGTAGAAACTCCctAtCTTATGGGTTGGGAcTAcCCAAAATG----
SARS_CORONAVIRUS ccatatgtcatTGACAtgtCCAcaaCTtgCgTGtggAGGtTAATGttgTCTacTGTT---
Severe_acute_respiratory_syndrom -----------TGAtAGAGCCATGCCTAACATGCTTAGaATtATGGCCTCaCTTGTTCTT
SARS_coronavirus_civet007 -----------TGACAGAGCCATGCCTAACATGCTTAGGATAATGGCCTCTCTTGTTCTT
SARS_coronavirus_GZ50 -----------TGACAGAGCCATGCCTAACATGCTTAGGATAATGGCCTCTCTTGTTCTT
SARS_coronavirus_Taiwan_TC1 -----------TGACAGAGCCATGCCTAACATGCTTAGGATAATGGCCTCTCTTGTTCTT
Bat_coronavirus_(BtCoV/273/2005) -----------TGACAGAGCCATGCCTAACATGCTTAGaATtATGGCtTCTCTTGTTCTT
BtRf-BetaCoV/HeB2013 -----------TGACAGAGCCATGCCTAACATGCTTAGaATtATGGCtTCTCTTGTTCTT
SARS_CORONAVIRUS ----GtAAACAccttAaTaGtccTcACTTcTCtCA---------------AagaAAgaAG
Severe_acute_respiratory_syndrom GCTCGCAAACATAcaACgTGtTGTAgCTTgTCACACCGTTTCTAtAGATTAGCTAAtGAG
SARS_coronavirus_civet007 GCTCGCAAACATAACACTTGCTGTAACTTATCACACCGTTTCTACAGgTTAGCTAACGAG
SARS_coronavirus_GZ50 GCTCGCAAACATAACACTTGCTGTAACTTATCACACCGTTTCTACAGgTTAGCTAACGAG
SARS_coronavirus_Taiwan_TC1 GCTCGCAAACATAACACTTGCTGTAACTTATCACACCGTTTCTACAGgTTAGCTAACGAG
Bat_coronavirus_(BtCoV/273/2005) GCTCGCAAACATAgCACTTGtTGTAACTTgTCACACCGTTTCTAtAGATTAGCTAAtGAG
BtRf-BetaCoV/HeB2013 GCTCGCAAACATAgCACTTGCTGTAACTTgTCACACCGTTTCTAtAGATTAGCTAAtGAG
SARS_CORONAVIRUS TGTct------------TaAGATtGTCAaagGTGataaCtTCACcAT--------CtAGG
Severe_acute_respiratory_syndrom TGTGCtCAAGTATTgAGTGAaATGGTCATGTGTGGCGGt-TCACTATATGTTAAACCAGG
SARS_coronavirus_civet007 TGTGCGCAAGTATTAAGTGAGATGGTCATGTGTGGCGGC-TCACTATATGTTAAACCAGG
SARS_coronavirus_GZ50 TGTGCGCAAGTATTAAGTGAGATGGTCATGTGTGGCGGC-TCACTATATGTTAAACCAGG
SARS_coronavirus_Taiwan_TC1 TGTGCGCAAGTATTAAGTGAGATGGTCATGTGTGGCGGC-TCACTATATGTTAAACCAGG
Bat_coronavirus_(BtCoV/273/2005) TGTGCaCAAGTATTAAGTGAGATGGTCATGTGcGGaGGC-TCACTATATGTaAAACCAGG
BtRf-BetaCoV/HeB2013 TGTGCaCAAGTATTAAGTGAGATGGTCATGTGTGGaGGC-TCACTATATGTaAAACCAGG
SARS_CORONAVIRUS TGGAAtgTggTagGaTtA------------------------------------------
Severe_acute_respiratory_syndrom TGGAACcTCATCAGGaGATGCCACAACTGCTTATGCTAATAGTGTtTTTAACATTTGTCA
SARS_coronavirus_civet007 TGGAACATCATCcGGTGATGCtACAACTGCTTATGCTAATAGTGTCTTTAACATTTGTCA
SARS_coronavirus_GZ50 TGGAACATCATCcGGTGATGCtACAACTGCTTATGCTAATAGTGTCTTTAACATTTGTCA
SARS_coronavirus_Taiwan_TC1 TGGAACATCATCcGGTGATGCtACAACTGCTTATGCTAATAGTGTCTTTAACATTTGTCA
Bat_coronavirus_(BtCoV/273/2005) TGGAACATCATCAGGTGATGCCACAACTGCcTAcGCTAATAGTGTgTTTAACATTTGTCA
BtRf-BetaCoV/HeB2013 TGGAACATCATCAGGTGATGCCACAACTGCTTATGCTAATAGTGTgTTTAACATTTGTCA
SARS_CORONAVIRUS -----------CtAgTGTAAtATaCACTTtTaTCAcCT-cTctTAAgAAatTctaTacCt
Severe_acute_respiratory_syndrom AGCTGTcACgGCCAATGTtA-ATGCACTTtTaTCtACTGATGGTAACAAaATtGCcGAtA
SARS_coronavirus_civet007 AGCTGTtACAGCCAATGTAA-ATGCACTTCTTTCAACTGATGGTAAtAAGATAGCTGACA
SARS_coronavirus_GZ50 AGCTGTtACAGCCAATGTAA-ATGCACTTCTTTCAACTGATGGTAAtAAGATAGCTGACA
SARS_coronavirus_Taiwan_TC1 AGCTGTtACAGCCAATGTAA-ATGCACTTCTTTCAACTGATGGTAAtAAGATAGCTGACA
Bat_coronavirus_(BtCoV/273/2005) AGCgGTgACAGCtAATGTAA-ATGCACTTCTcTCAACTGATGGTAACAAGATtGCTGACA
BtRf-BetaCoV/HeB2013 AGCgGTgACAGCtAATGTAA-ATGCACTTCTTTCAACTGATGGTAACAAGATtGCTGACA
SARS_CORONAVIRUS AGT-TGTgtagAtTgTcCAgaAtAGGacCaA------TCTtTATAGgAAccaGcAaGT--
Severe_acute_respiratory_syndrom AGTATGTCCGCAATtTACAACACAGaCTtTATGAGTGTCTCTATAGAAATAGaGATGTTG
SARS_coronavirus_civet007 AGTATGTCCGCAATCTACAACACAGGCTCTATGAGTGTCTCTATAGAAATAGGGATGTTG
SARS_coronavirus_GZ50 AGTATGTCCGCAATCTACAACACAGGCTCTATGAGTGTCTCTATAGAAATAGGGATGTTG
SARS_coronavirus_Taiwan_TC1 AGTATGTCCGCAATCTACAACACAGGCTCTATGAGTGTCTCTATAGAAATAGGGATGTTG
Bat_coronavirus_(BtCoV/273/2005) AGTAcGTtCGCAAcCTtCAACACAGaCTaTATGAGTGTCTCTATAGAAATAGaGAcGTTG
BtRf-BetaCoV/HeB2013 AGTAcGTtCGCAAcCTcCAACACAGGCTaTATGAGTGTCTCTATAGAAATAGaGAcGTTG
SARS_CORONAVIRUS ------------gaGATG-GTTTcA-----------aTAAAatgTTCTtCAgG-----Tg
Severe_acute_respiratory_syndrom AcacaGAcTTtGTGaATGAGTTTTACGCATAttTGCGTAAACATTTCTCaATGATGATaC
SARS_coronavirus_civet007 ATCATGAATTCGTGGATGAGTTTTACGCtTACCTGCGTAAACATTTCTCCATGATGATTC
SARS_coronavirus_GZ50 ATCATGAATTCGTGGATGAGTTTTACGCtTACCTGCGTAAACATTTCTCCATGATGATTC
SARS_coronavirus_Taiwan_TC1 ATCATGAATTCGTGGATGAGTTTTACGCtTACCTGCGTAAACATTTCTCCATGATGATTC
Bat_coronavirus_(BtCoV/273/2005) ATCATGAATTtGTGGAcGAaTTTTACGCATAttTGCGTAAgCAcTTCTCCATGATGATTC
BtRf-BetaCoV/HeB2013 ATCATGAATTtGTGGATGAaTTTTACGCATAttTGCGTAAgCATTTCTCCATGATGATTC
SARS_CORONAVIRUS TTTtaGAaGAaGaagtaagataaCCaTTaTacGCTgTAACAGcAt-----CaGgTgAAGa
Severe_acute_respiratory_syndrom TcTCTGAcGATG-----------CtGTTGTGTGtTtcAAtAGcActTATGCatCTCAAGG
SARS_coronavirus_civet007 TTTCTGATGATG-----------CCGTTGTGTGCTATAACAGTAACTATGCGGCTCAAGG
SARS_coronavirus_GZ50 TTTCTGATGATG-----------CCGTTGTGTGCTATAACAGTAACTATGCGGCTCAAGG
SARS_coronavirus_Taiwan_TC1 TTTCTGATGATG-----------CCGTTGTGTGCTATAACAGTAACTATGCGGCTCAAGG
Bat_coronavirus_(BtCoV/273/2005) TTTCTGATGATG-----------CCGTTGTGTGCTAcAAtAGTAACTATGCGGCgCAAGG
BtRf-BetaCoV/HeB2013 TTTCTGATGATG-----------CCGTTGTGTGCTAcAAtAGTAACTATGCGGCTCAAGG
SARS_CORONAVIRUS aacAGaAaCT-GtAgCtgGcACTTTgAG--AGaTCTcataTAcC-gAgcAgctTcTTCca
Severe_acute_respiratory_syndrom TcTAGTgGCTAGCATaAAGAACTTTAAGtCAGTTCTTTATTATCAAAAcAATGTtTTtAT
SARS_coronavirus_civet007 TTTAGTAGCTAGCATtAAGAACTTTAAGGCAGTTCTTTATTATCAAAATAATGTGTTCAT
SARS_coronavirus_GZ50 TTTAGTAGCTAGCATtAAGAACTTTAAGGCAGTTCTTTATTATCAAAATAATGTGTTCAT
SARS_coronavirus_Taiwan_TC1 TTTAGTAGCTAGCATtAAGAACTTTAAGGCAGTTCTTTATTATCAAAATAATGTGTTCAT
Bat_coronavirus_(BtCoV/273/2005) TTTAGTAGCTAGCATCAAGAACTTTAAaGCAGTTCTTTAcTATCAAAAcAATGTGTTtAT
BtRf-BetaCoV/HeB2013 TTTAGTAGCTAGCATCAAGAACTTTAAaGCAGTTCTTTAcTAcCAAAATAATGTGTTtAT
SARS_CORONAVIRUS aatTtAaGCcAtgTGTT------------ACaTagCcAAgtGgCaTtgT-----------
Severe_acute_respiratory_syndrom GTCTGAaGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTC
SARS_coronavirus_civet007 GTCTGAGGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCAcGAATTTTGCTC
SARS_coronavirus_GZ50 GTCTGAGGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCAcGAATTTTGCTC
SARS_coronavirus_Taiwan_TC1 GTCTGAGGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCAcGAATTTTGCTC
Bat_coronavirus_(BtCoV/273/2005) GTCTGAGGCAAAATGcTGGACTGAGACTGAtCTTACcAAAGGACCTCATGAATTTTGCTC
BtRf-BetaCoV/HeB2013 GTCTGAGGCAAAATGcTGGACTGAGACTGACCTTACcAAAGGACCTCATGAATTTTGCTC
SARS_CORONAVIRUS --------------------AACAAG----------------------------AGtTtC
Severe_acute_respiratory_syndrom tCAaCATACAATGCTAGTTAAACAgGGtGATGATTAtGTGTACCTtCCTTACCCAGATCC
SARS_coronavirus_civet007 ACAGCATACAATGCTAGTTAAACAAGGAGATGATTACGTGTACCTGCCTTACCCAGATCC
SARS_coronavirus_GZ50 ACAGCATACAATGCTAGTTAAACAAGGAGATGATTACGTGTACCTGCCTTACCCAGATCC
SARS_coronavirus_Taiwan_TC1 ACAGCATACAATGCTAGTTAAACAAGGAGATGATTACGTGTACCTGCCTTACCCAGATCC
Bat_coronavirus_(BtCoV/273/2005) tCAGCATACAATGCTAGTTAAACAAGGAGATGAcTAtGTGTACCTGCCTTAtCCAGATCC
BtRf-BetaCoV/HeB2013 tCAGCATACAATGCTAGTTAAACAAGGAGATGAcTAtGTGTACCTGCCTTAtCCAGATCC
SARS_CORONAVIRUS ATttAGAtcgTTAaGtG----------TGTtGATa--AgTGaCgctACAGtTGtTttACT
Severe_acute_respiratory_syndrom ATCAAGAATccTAGGgGCcGGCTGTTTTGTaGATGATATcGTaAAAACAGATGGTACACT
SARS_coronavirus_civet007 ATCAAGAATATTAGGCGCAGGCTGTTTTGTCGATGATATTGTCAAAACAGATGGTACACT
SARS_coronavirus_GZ50 ATCAAGAATATTAGGCGCAGGCTGTTTTGTCGATGATATTGTCAAAACAGATGGTACACT
SARS_coronavirus_Taiwan_TC1 ATCAAGAATATTAGGCGCAGGCTGTTTTGTCGATGATATTGTCAAAACAGATGGTACACT
Bat_coronavirus_(BtCoV/273/2005) ATCAAGAATATTAGGCGCAGGCTGTTTTGTtGATGAcATcGTCAAAACAGATGGTACACT
BtRf-BetaCoV/HeB2013 ATCAAGAATAcTAGGCGCAGGCTGTTTTGTtGATGAcATcGTCAAAACAGATGGTACACT
SARS_CORONAVIRUS ggTG--TaAAAG---------------------------------TAaAAtctAgCAcCa
Severe_acute_respiratory_syndrom TATGATTGAAcGGTTCGTGTCttTaGCTATaGATGCTTACCCACTTACtA---AACATCC
SARS_coronavirus_civet007 TATGATTGAAAGGTTCGTGTCACTGGCTATTGATGCTTACCCACTTACAA---AACATCC
SARS_coronavirus_GZ50 TATGATTGAAAGGTTCGTGTCACTGGCTATTGATGCTTACCCACTTACAA---AACATCC
SARS_coronavirus_Taiwan_TC1 TATGATTGAAAGGTTCGTGTCACTGGCTATTGATGCTTACCCACTTACAA---AACATCC
Bat_coronavirus_(BtCoV/273/2005) TATGATTGAAAGGTTtGTGTCACTtGCgATTGAcGCTTACCCACTTACtA---AACAcCC
BtRf-BetaCoV/HeB2013 TATGATTGAAAGGTTtGTGTCACTtGCgATTGATGCTTACCCACTTACtA---AACAcCC
SARS_CORONAVIRUS TAATCAaccacAccCTctTGTaTTTtAataccCTTaTATTTACgcTgtAT----AgtTgA
Severe_acute_respiratory_syndrom TAATCAGGAGTATGCTGATGTCTTTCA-----tTTGTAcTTACAATACATaAGAAAGcTA
SARS_coronavirus_civet007 TAATCAGGAGTATGCTGATGTCTTTCA-----CTTGTATTTACAATACATTAGAAAGTTA
SARS_coronavirus_GZ50 TAATCAGGAGTATGCTGATGTCTTTCA-----CTTGTATTTACAATACATTAGAAAGTTA
SARS_coronavirus_Taiwan_TC1 TAATCAGGAGTATGCTGATGTCTTTCA-----CTTGTATTTACAATACATTAGAAAGTTA
Bat_coronavirus_(BtCoV/273/2005) aAAcCAGGAaTATGCTGATGTtTTcCA-----CTTGTATTTgCAATACATTAGgAAaTTA
BtRf-BetaCoV/HeB2013 cAAcCAGGAGTATGCTGATGTtTTcCA-----tTTGTATTTgCAATACATTAGgAAaTTA
SARS_CORONAVIRUS aActATGgctTTAgTttCCACA---caGACAgGcATTaatttgCGTgtTtCTtctgCatg
Severe_acute_respiratory_syndrom CATGATGAGtTaACaGGaCACATGTTaGACATGTATTC-----tGTtATGCT--tACTAA
SARS_coronavirus_civet007 CATGATGAGCTTACTGGCCACATGTTGGACATGTATTC-----CGTAATGCT--AACTAA
SARS_coronavirus_GZ50 CATGATGAGCTTACTGGCCACATGTTGGACATGTATTC-----CGTAATGCT--AACTAA
SARS_coronavirus_Taiwan_TC1 CATGATGAGCTTACTGGCCACATGTTGGACATGTATTC-----CGTAATGCT--AACTAA
Bat_coronavirus_(BtCoV/273/2005) CATGATGAGCTTACTGGtCACATGTTGGACATGTAcTC-----tGTAATGCT--AACTAA
BtRf-BetaCoV/HeB2013 CATGATGAGCTTACTGGtCACATGTTGGACATGTAcTC-----tGTAATGCT--AACTAA
SARS_CORONAVIRUS TGcaAgCAttTCtCGcaaaTtCcaaGAAaC--AGTTccAaGAattTcTtgcTtCtCAttA
Severe_acute_respiratory_syndrom TGATAACACtTCAaG---GTAtTGGGAACCTGAGTTTTATGAGGCTATG--TACACACCg
SARS_coronavirus_civet007 TGATAACACCTCACG---GTACTGGGAACCTGAGTTTTATGAGGCTATG--TACACACCA
SARS_coronavirus_GZ50 TGATAACACCTCACG---GTACTGGGAACCTGAGTTTTATGAGGCTATG--TACACACCA
SARS_coronavirus_Taiwan_TC1 TGATAACACCTCACG---GTACTGGGAACCTGAGTTTTATGAGGCTATG--TACACACCA
Bat_coronavirus_(BtCoV/273/2005) TGAcAAtACaTCACG---GTACTGGGAACCTGAGTTTTAcGAaGCcATG--TACACACCA
BtRf-BetaCoV/HeB2013 TGATAACACaTCACG---GTACTGGGAACCTGAGTTTTAcGAGGCcATG--TACACACCA
SARS_CORONAVIRUS gAgAtAaTagaTgGtAGaaTGTaaaAGGcaCTTtTacAcTtTttAA-gCACtGtCTTtgC
Severe_acute_respiratory_syndrom CATACAGT--CTTaCAGGCTGT---tGGgGCTTGTGTtcTtTGCAATTCACAGACTTCAt
SARS_coronavirus_civet007 CATACAGT--CTTGCAGGCTGT---AGGTGCTTGTGTATTGTGCAATTCACAGACTTCAC
SARS_coronavirus_GZ50 CATACAGT--CTTGCAGGCTGT---AGGTGCTTGTGTATTGTGCAATTCACAGACTTCAC
SARS_coronavirus_Taiwan_TC1 CATACAGT--CTTGCAGGCTGT---AGGTGCTTGTGTATTGTGCAATTCACAGACTTCAC
Bat_coronavirus_(BtCoV/273/2005) CATACAaT--CTTGCAGGCTGT---AGGTGCaTGTGTgTTGTGtAATTCACAGACTTCAC
BtRf-BetaCoV/HeB2013 CATACAaT--CTTGCAGGCTGT---AGGTGCaTGTGTATTGTGtAAcTCACAGACTTCAC
SARS_CORONAVIRUS cTCcTcTaCaGTGtaacCATTtaaAccCtgacCCgg----GtAAGTGgTtaTATaA----
Severe_acute_respiratory_syndrom TaaGa-TGtGGTGCtTGCATacGtAGACCATTCtTATGTTGtAAaTGCTGtTAcGACCAT
SARS_coronavirus_civet007 TTCGT-TGCGGTGCCTGtATTAGGAGACCATTCCTATGTTGCAAGTGCTGCTATGACCAT
SARS_coronavirus_GZ50 TTCGT-TGCGGTGCCTGtATTAGGAGACCATTCCTATGTTGCAAGTGCTGCTATGACCAT
SARS_coronavirus_Taiwan_TC1 TTCGT-TGCGGTGCCTGtATTAGGAGACCATTCCTATGTTGCAAGTGCTGCTATGACCAT
Bat_coronavirus_(BtCoV/273/2005) TTCGT-TGCGGcGCgTGCATTAGGAGACCgTTCCTtTGTTGCAAGTGCTGCTATGACCAT
BtRf-BetaCoV/HeB2013 TTCGT-TGCGGcGCgTGCATTAGGAGACCgTTCCTtTGTTGCAAGTGCTGCTATGACCAT
SARS_CORONAVIRUS ---------------------------TTGTCTGTTggcaCtT---TTctCAAaGCtttc
Severe_acute_respiratory_syndrom GTCATaTCAACATCACAtAAATTAGTcTTGTCTGTTAATCCgTATGTTTGCAATGCtCCA
SARS_coronavirus_civet007 GTCATTTCAACATCACACAAATTAGTGTTGTCTGTTAATCCCTATGTTTGCAATGCCCCA
SARS_coronavirus_GZ50 GTCATTTCAACATCACACAAATTAGTGTTGTCTGTTAATCCCTATGTTTGCAATGCCCCA
SARS_coronavirus_Taiwan_TC1 GTCATTTCAACATCACACAAATTAGTGTTGTCTGTTAATCCCTATGTTTGCAATGCCCCA
Bat_coronavirus_(BtCoV/273/2005) GTtATTTCAACATCtCAtAAATTAGTacTGTCTGTTAATCCCTATGTTTGCAATGCCCCA
BtRf-BetaCoV/HeB2013 GTCATaTCAACATCcCACAAATTAGTGcTGTCTGTTAATCCCTATGTTTGCAATGCCCCA
SARS_CORONAVIRUS GcTaGc-ATtTCAgTa--GTGcCACcAgccTtTTTAGtAGGTATaAcC---------Aca
Severe_acute_respiratory_syndrom GGTTGTGATGTCACaGATGTGACtCAACTtTAcTTAGGAGGTATGAGCTATTATTGtAAa
SARS_coronavirus_civet007 GGTTGTGATGTCACTGATGTGACACAACTGTATcTAGGAGGTATGAGCTATTATTGCAAG
SARS_coronavirus_GZ50 GGTTGTGATGTCACTGATGTGACACAACTGTATcTAGGAGGTATGAGCTATTATTGCAAG
SARS_coronavirus_Taiwan_TC1 GGTTGTGATGTCACTGATGTGACACAACTGTATcTAGGAGGTATGAGCTATTATTGCAAG
Bat_coronavirus_(BtCoV/273/2005) GGTTGTGgcGTtACTGATGTaACACAACTGTAcTTAGGAGGTATGAGtTAcTAcTGCAAG
BtRf-BetaCoV/HeB2013 GGTTGTGAcGTtACTGATGTaACACAACTGTAcTTAGGAGGTATGAGCTAcTATTGCAAG
SARS_CORONAVIRUS gCAgtTAAaaCaCCCtcTtGaacaacaTcacCCAcTATaTatggAgcaTC----------
Severe_acute_respiratory_syndrom TCACATAAaCCaCCCATTAG-------TTTTCCATTgTGTGCTAATGGaCAaGTTTTTGG
SARS_coronavirus_civet007 TCACATAAGCCTCCCATTAG-------TTTTCCATTATGTGCTAATGGTCAGGTTTTTGG
SARS_coronavirus_GZ50 TCACATAAGCCTCCCATTAG-------TTTTCCATTATGTGCTAATGGTCAGGTTTTTGG
SARS_coronavirus_Taiwan_TC1 TCACATAAGCCTCCCATTAG-------TTTTCCATTATGTGCTAATGGTCAGGTTTTTGG
Bat_coronavirus_(BtCoV/273/2005) TCACATAAGCCTCCCATTAG-------TTTcCCATTgTGTGCTAATGGTCAGGTTTTTGG
BtRf-BetaCoV/HeB2013 TCACAcAAaCCTCCCATTAG-------TTTcCCATTgTGTGCTAATGGTCAGGTTTTTGG
SARS_CORONAVIRUS TTTcTtTAAgAA----------aGtgaTGtCAATGTCACTaACaagAgTG-----GCAga
Severe_acute_respiratory_syndrom TTTATATAAAAAtACATGTGTtGGtAGcGAtAATGTtACTGACTTtAATGCaATtGCAAC
SARS_coronavirus_civet007 TTTATAcAAAAACACATGTGTAGGCAGTGACAATGTCACTGACTTCAATGCGATAGCAAC
SARS_coronavirus_GZ50 TTTATAcAAAAACACATGTGTAGGCAGTGACAATGTCACTGACTTCAATGCGATAGCAAC
SARS_coronavirus_Taiwan_TC1 TTTATAcAAAAACACATGTGTAGGCAGTGACAATGTCACTGACTTCAATGCGATAGCAAC
Bat_coronavirus_(BtCoV/273/2005) TcTATATAAgAACACATGTGTAGGCAGTGACAATGTtACTGACTTtAATGCtATAGCAAC
BtRf-BetaCoV/HeB2013 TcTATATAAgAACACATGTGTAGGCAGTGACAATGTtACTGACTTtAATGCtATAGCAAC
SARS_CORONAVIRUS ATcTGgaTGaA-----GaTtGCcATTAatgtcaATAtaaagtAACAagTtTtCTGtGAGg
Severe_acute_respiratory_syndrom ATGTGAcTGGACaAATGCTGGtGATTA-----CATttTaGCtAACACcTGTACTGAaAG-
SARS_coronavirus_civet007 ATGTGATTGGACTAATGCTGGCGATTA-----CATACTTGCCAACACTTGTACTGAGAG-
SARS_coronavirus_GZ50 ATGTGATTGGACTAATGCTGGCGATTA-----CATACTTGCCAACACTTGTACTGAGAG-
SARS_coronavirus_Taiwan_TC1 ATGTGATTGGACTAATGCTGGCGATTA-----CATACTTGCCAACACTTGTACTGAGAG-
Bat_coronavirus_(BtCoV/273/2005) ATGTGATTGGACTAATGCTGGCGATTA-----CATACTTGCCAACACTTGTACaGAGAG-
BtRf-BetaCoV/HeB2013 ATGTGATTGGACTAATGCTGGCGATTA-----CATACTTGCCAACACTTGTACaGAGAG-
SARS_CORONAVIRUS aACTtAgttTcTTC----CAGAgttGtTgtAActtctTcAacAcAagcTTtgatTtTCTT
Severe_acute_respiratory_syndrom -ACTCAAGCTTTTtGCAGCAGAAACGCTCAAAGCtACTGAGGAgACATTTAAaCTGTCTT
SARS_coronavirus_civet007 -ACTCAAGCTTTTCGCAGCAGAAACGCTCAAAGCCACTGAGGAAACATTTAAGCTGTCaT
SARS_coronavirus_GZ50 -ACTCAAGCTTTTCGCAGCAGAAACGCTCAAAGCCACTGAGGAAACATTTAAGCTGTCaT
SARS_coronavirus_Taiwan_TC1 -ACTCAAGCTTTTCGCAGCAGAAACGCTCAAAGCCACTGAGGAAACATTTAAGCTGTCaT
Bat_coronavirus_(BtCoV/273/2005) -ACTCAAGCTTTTCGCAGCtGAAACGCTCAAAGCaACTGAGGAgACATTcAAGCTaTCTT
BtRf-BetaCoV/HeB2013 -ACTCAAGCTTTTCGCAGCtGAAACGCTCAAAGCaACTGAGGAgACATTcAAGCTaTCTT
SARS_CORONAVIRUS ATcaTcTTGttttCtCTGTtCaacTGAAGgttTACTtTCaGttAtAaatggcttAAcTtC
Severe_acute_respiratory_syndrom ATGGTATTG---CtACTGTACG--TGAAG---TgCTgTCTGACAGAG-------AATTaC
SARS_coronavirus_civet007 ATGGTATTG---CCACTGTACG--cGAAG---TACTCTCTGACAGAG-------AATTGC
SARS_coronavirus_GZ50 ATGGTATTG---CCACTGTACG--cGAAG---TACTCTCTGACAGAG-------AATTGC
SARS_coronavirus_Taiwan_TC1 ATGGTATTG---CCACTGTACG--cGAAG---TACTCTCTGACAGAG-------AATTGC
Bat_coronavirus_(BtCoV/273/2005) ATGGTATTG---CtACTGTACG--TGAAG---TACTgTCTGAtAGAG-------AAcTtC
BtRf-BetaCoV/HeB2013 ATGGTATTG---CCACTGTACG--TGAAG---TACTgTCTGAtAaAG-------AAcTtC
SARS_CORONAVIRUS cTCTTT------------aggAAtCTcagCgAtCtTTtgttc--AACTtgcTtTTcACTc
Severe_acute_respiratory_syndrom ATCTTTCATGGGAaGTTGGtAAACCTAGACCACCAcTtAACcGAAAtTATGTCTTTACTG
SARS_coronavirus_civet007 ATCTTTCATGGGAGGTTGGAAAACCTAGACCACCATTGAACAGAAACTATGTCTTTACTG
SARS_coronavirus_GZ50 ATCTTTCATGGGAGGTTGGAAAACCTAGACCACCATTGAACAGAAACTATGTCTTTACTG
SARS_coronavirus_Taiwan_TC1 ATCTTTCATGGGAGGTTGGAAAACCTAGACCACCATTGAACAGAAACTATGTCTTTACTG
Bat_coronavirus_(BtCoV/273/2005) ATCTTTCATGGGAGGTaGGAAAACCaAGACCACCATTGAAtAGgAAtTATGTCTTTACTG
BtRf-BetaCoV/HeB2013 AcCTTTCATGGGAGGTgGGAAAACCaAGACCACCATTGAAtAGgAAtTATGTCTTTACTG
SARS_CORONAVIRUS tTcA-----TttCcAAAAAgctTgAAacA-AGtTTGtcatagAgAttTTTatcAAAGaca
Severe_acute_respiratory_syndrom GTTAtCGTGTAACTAAAAAcAGTAAAGTACAaATaGGAGAGTACACCTTTGAAAAAGGTG
SARS_coronavirus_civet007 GTTACCGTGTAACTAAAAATAGTAAAGTACAGATTGGAGAGTACACCTTTGAAAAAGGTG
SARS_coronavirus_GZ50 GTTACCGTGTAACTAAAAATAGTAAAGTACAGATTGGAGAGTACACCTTTGAAAAAGGTG
SARS_coronavirus_Taiwan_TC1 GTTACCGTGTAACTAAAAATAGTAAAGTACAGATTGGAGAGTACACCTTTGAAAAAGGTG
Bat_coronavirus_(BtCoV/273/2005) GTTACCGTGTAACTAAAAATAGTAAAGTACAaATTGGAGAGTACACaTTTGAAAAAGGTG
BtRf-BetaCoV/HeB2013 GTTACCGTGTAACTAAAAATAGTAAAGTACAaATTGGAGAGTACACaTTTGAAAAAGGTG
SARS_CORONAVIRUS gCTAaGtaGAcatTtgTGcGaACAGtAtcTACacaAACtcttAAA--GAATGT-----AT
Severe_acute_respiratory_syndrom ACTATGGTGATGCTGTTGTtTACcG-AGGTACaACAACtTACAAATTaAATGTTGGTGAT
SARS_coronavirus_civet007 ACTATGGTGATGCTGTTGTGTACAG-AGGTACTACgACATACAAgTTGAATGTTGGTGAT
SARS_coronavirus_GZ50 ACTATGGTGATGCTGTTGTGTACAG-AGGTACTACgACATACAAgTTGAATGTTGGTGAT
SARS_coronavirus_Taiwan_TC1 ACTATGGTGATGCTGTTGTGTACAG-AGGTACTACgACATACAAgTTGAATGTTGGTGAT
Bat_coronavirus_(BtCoV/273/2005) ACTATGGTGATGCTGTTGTGTACAG-AGGTACTACAACATACAAATTGAATGTTGGTGAT
BtRf-BetaCoV/HeB2013 ACTATGGTGATGCTGTTGTGTACAG-AGGTACTACAACATAtAAATTGAATGTTGGTGAT
SARS_CORONAVIRUS agggTTGcGCcGACA---------------CtgCTctGTGggttTctctTctTG------
Severe_acute_respiratory_syndrom TAtTTTGTGCTGACATCACAtACAGTAATGCCAtTAAGTGCACCTACACTAGTGCCACAA
SARS_coronavirus_civet007 TACTTTGTGtTGACATCtCACACtGTAATGCCACTtAGTGCACCTACtCTAGTGCCACAA
SARS_coronavirus_GZ50 TACTTTGTGtTGACATCtCACACtGTAATGCCACTtAGTGCACCTACtCTAGTGCCACAA
SARS_coronavirus_Taiwan_TC1 TACTTTGTGtTGACATCtCACACtGTAATGCCACTtAGTGCACCTACtCTAGTGCCACAA
Bat_coronavirus_(BtCoV/273/2005) TACTTTGTGCTaACATCACACACAGTAATGCCACTAAGTGCACCaACACTAGTGCCtCAA
BtRf-BetaCoV/HeB2013 TACTTTGTGCTaACATCACACACAGTAATGCCACTAAGTGCACCTACACTAGTGCCtCAg
SARS_CORONAVIRUS ---------GcGtGggTTgCTG---------------ctgAggTtcCAGAgGAG------
Severe_acute_respiratory_syndrom GAGCACTATGTtAGAATTACTGGCTTATACCCAACACTCAAtATCTCAGATGAGTTTTCT
SARS_coronavirus_civet007 GAGCACTATGTGAGAATTACTGGCTTgTACCCAACACTCAACATCTCAGATGAGTTTTCT
SARS_coronavirus_GZ50 GAGCACTATGTGAGAATTACTGGCTTgTACCCAACACTCAACATCTCAGATGAGTTTTCT
SARS_coronavirus_Taiwan_TC1 GAGCACTATGTGAGAATTACTGGCTTgTACCCAACACTCAACATCTCAGATGAGTTTTCT
Bat_coronavirus_(BtCoV/273/2005) GAGCACTATGTGAGAATaACTGGCTTATACCCAACtCTCAACATtTCAGAaGAGTTTTCT
BtRf-BetaCoV/HeB2013 GAGCACTATGTGAGAATaACTGGCTTATACCCAACtCTCAACATtTCAGAaGAGTTTTCT
SARS_CORONAVIRUS ----------------AgCAgcAGGatGGC---CgggAGc--------------GGA--g
Severe_acute_respiratory_syndrom AGCAATGTTGCAAATTATCAAAAGGTtGGtATGCAAAAGTAtTCTACACTCCAgGGACCA
SARS_coronavirus_civet007 AGCAATGTTGCAAATTATCAAAAGGTCGGCATGCAAAAGTACTCTACACTCCAAGGACCA
SARS_coronavirus_GZ50 AGCAATGTTGCAAATTATCAAAAGGTCGGCATGCAAAAGTACTCTACACTCCAAGGACCA
SARS_coronavirus_Taiwan_TC1 AGCAATGTTGCAAATTATCAAAAGGTCGGCATGCAAAAGTACTCTACACTCCAAGGACCA
Bat_coronavirus_(BtCoV/273/2005) AGCAATGTTGCAAAcTAcCAgAAGGTCGGtATGCAAAAaTAtTCaACACTCCAgGGACCA
BtRf-BetaCoV/HeB2013 AGCAATGTTGCAAAcTAcCAgAAGGTCGGtATGCAAAAaTAtTCaACACTCCAgGGACCA
SARS_CORONAVIRUS CCaGGagtgaGgAAG---------GCCgcCGG----------------------------
Severe_acute_respiratory_syndrom CCTGGTACTGGTAAGAGTCATTTTGCtATtGGcCTaGCTCTCTACTACCCtTCTGCTCGC
SARS_coronavirus_civet007 CCTGGTACTGGTAAGAGTCATTTTGCCATCGGACTTGCTCTCTAtTACCCATCTGCTCGC
SARS_coronavirus_GZ50 CCTGGTACTGGTAAGAGTCATTTTGCCATCGGACTTGCTCTCTAtTACCCATCTGCTCGC
SARS_coronavirus_Taiwan_TC1 CCTGGTACTGGTAAGAGTCATTTTGCCATCGGACTTGCTCTCTAtTACCCATCTGCTCGC
Bat_coronavirus_(BtCoV/273/2005) CCaGGTACcGGTAAGAGTCATTTTGCtATtGGACTTGCaCTCTACTACCCgTCTGCTCGC
BtRf-BetaCoV/HeB2013 CCaGGTACcGGTAAGAGTCATTTTGCtATtGGACTTGCaCTCTACTACCCgTCTGCTCGC
SARS_CORONAVIRUS ----------CAGCATGCctTCgTcCcGgaacCTtTTGATG-------------------
Severe_acute_respiratory_syndrom ATAGTGTATACAGCtTGCTCTCATGCcG----CTGTTGATGCACTATGTGAgAAGGCATT
SARS_coronavirus_civet007 ATAGTGTATACgGCATGCTCTCATGCAG----CTGTTGATGCcCTATGTGAAAAGGCATT
SARS_coronavirus_GZ50 ATAGTGTATACgGCATGCTCTCATGCAG----CTGTTGATGCcCTATGTGAAAAGGCATT
SARS_coronavirus_Taiwan_TC1 ATAGTGTATACgGCATGCTCTCATGCAG----CTGTTGATGCcCTATGTGAAAAGGCATT
Bat_coronavirus_(BtCoV/273/2005) ATAGTGTATACAGCtTGCTCTCATGCtG----CTGTTGATGCACTATGcGAAAAGGCATT
BtRf-BetaCoV/HeB2013 ATAGTGTATACAGCtTGCTCTCATGCtG----CTGTTGATGCACTATGcGAAAAGGCATT
SARS_CORONAVIRUS ---------------gGgccAATGTcGT---ccCAaACCTctGgcTGCaCa--------G
Severe_acute_respiratory_syndrom AAAATATTTGCCtATAGATAAATGTAGTAGAATtATACCTGCaCGTGCtCGtGTAGAGTG
SARS_coronavirus_civet007 AAAATATTTGCCCATAGATAAATGTAGTAGAATCATACCTGCGCGTGCGCGCGTAGAGTG
SARS_coronavirus_GZ50 AAAATATTTGCCCATAGATAAATGTAGTAGAATCATACCTGCGCGTGCGCGCGTAGAGTG
SARS_coronavirus_Taiwan_TC1 AAAATATTTGCCCATAGATAAATGTAGTAGAATCATACCTGCGCGTGCGCGCGTAGAGTG
Bat_coronavirus_(BtCoV/273/2005) gAAATAcTTGCCtATAGAcAAgTGcAGTAGAATCATACCTGCaCGTGCGCGtGTgGAGTG
BtRf-BetaCoV/HeB2013 gAAATAcTTGCCtATAGAcAAgTGTAGTAGAATCATACCTGCaCGTGCGCGtGTgGAGTG
SARS_CORONAVIRUS cTTTGAagtcaTCAA--TGAccTCAAC---------------------CAtTGggAccat
Severe_acute_respiratory_syndrom TTTTGATAAATTCAAAGTGAATTCAACAtTAGAACAGTATGTcTTtTGtACTGTAAATGC
SARS_coronavirus_civet007 TTTTGATAAATTCAAAGTGAATTCAACACTAGAACAGTATGTTTTCTGCACTGTAAATGC
SARS_coronavirus_GZ50 TTTTGATAAATTCAAAGTGAATTCAACACTAGAACAGTATGTTTTCTGCACTGTAAATGC
SARS_coronavirus_Taiwan_TC1 TTTTGATAAATTCAAAGTGAATTCAACACTAGAACAGTATGTTTTCTGCACTGTAAATGC
Bat_coronavirus_(BtCoV/273/2005) cTTTGAcAAATTCAAAGTGAATTCAACAtTAGAACAGTAcGTTTTCTGCACTGTAAATGC
BtRf-BetaCoV/HeB2013 cTTTGAcAAATTCAAAGTGAATTCAACAtTAGAACAGTATGTTTTCTGCACTGTAAATGC
SARS_CORONAVIRUS ATcaCCAa--------GCTaA------gGTtccTGAaagAgTCcCTcaGaggA-----gA
Severe_acute_respiratory_syndrom ATTGCCtGAgACgACaGCaGAtATAGTtGTCTTTGATGAAATtTCaATGGCcACaAATTA
SARS_coronavirus_civet007 ATTGCCAGAAACAACTGCTGACATtGTAGTCTTTGATGAAATCTCTATGGCTACTAATTA
SARS_coronavirus_GZ50 ATTGCCAGAAACAACTGCTGACATtGTAGTCTTTGATGAAATCTCTATGGCTACTAATTA
SARS_coronavirus_Taiwan_TC1 ATTGCCAGAAACAACTGCTGACATtGTAGTCTTTGATGAAATCTCTATGGCTACTAATTA
Bat_coronavirus_(BtCoV/273/2005) AcTGCCtGAAACtACTGCTGACATAGTAGTCTTTGATGAAATtTCaATGGCaACTAATTA
BtRf-BetaCoV/HeB2013 AcTaCCtGAAACtACTGCTGACATAGTAGTCTTTGATGAAATtTCaATGGCaACTAATTA
SARS_CORONAVIRUS gGcCcTGgGTGTctaCAAT---AGgCTcaGTccccaggaccaGggAgACtaTggGaCTgT
Severe_acute_respiratory_syndrom TGAtTTGAGTGTTGTCAATGCcAGAtTACGT-----------GCtAAgCACTAtGTgTAc
SARS_coronavirus_civet007 TGACTTGAGTGTTGTCAATGCTAGACTtCGT-----------GCAAAACACTACGTCTAT
SARS_coronavirus_GZ50 TGACTTGAGTGTTGTCAATGCTAGACTtCGT-----------GCAAAACACTACGTCTAT
SARS_coronavirus_Taiwan_TC1 TGACTTGAGTGTTGTCAATGCTAGACTtCGT-----------GCAAAACACTACGTCTAT
Bat_coronavirus_(BtCoV/273/2005) TGACTTGAGTGTcGTCAATGCTAGACTACGT-----------GCAAAACACTACGTtTAc
BtRf-BetaCoV/HeB2013 TGACTTGAGTGTcGTCAATGCTAGACTACGT-----------GCAAAACACTACGTtTAc
SARS_CORONAVIRUS gaaaGaGgCCCTcCTgAAggccTTtgggGtCCCtgGgAgtTTGtgtAgTAccGGCAgCAC
Severe_acute_respiratory_syndrom ATTGGCGACCCTGCTCAA----TTACCtGCaCCACGCACATTGCTaACTAAgGGCA-CAC
SARS_coronavirus_civet007 ATTGGCGAtCCTGCTCAA----TTACCAGCCCCcCGCACATTGCTGACTAAAGGCA-CAC
SARS_coronavirus_GZ50 ATTGGCGAtCCTGCTCAA----TTACCAGCCCCcCGCACATTGCTGACTAAAGGCA-CAC
SARS_coronavirus_Taiwan_TC1 ATTGGCGAtCCTGCTCAA----TTACCAGCCCCcCGCACATTGCTGACTAAAGGCA-CAC
Bat_coronavirus_(BtCoV/273/2005) ATTGGtGACCCTGCTCAA----TTACCgGCgCCACGCACATTGCTtACTAAgGGCA-CAC
BtRf-BetaCoV/HeB2013 ATTGGtGACCCTGCTCAA----TTACCgGCgCCACGCACATTGCTtACTAAgGGCA-CAC
SARS_CORONAVIRUS aAGAcAtCtG-----------TCgtaGTGCA--------------AcAGGaCtAagC---
Severe_acute_respiratory_syndrom TAGA-ACCAGAATATTTcAATTCAGTGTGtAGACTTATGAAAACtATAGGTCCAGACATG
SARS_coronavirus_civet007 TAGA-ACCAGAATATTTTAATTCAGTGTGCAGACTTATGAAAACAATAGGTCCAGACATG
SARS_coronavirus_GZ50 TAGA-AtCAGAATATTTTAATTCAGTGTGCAGACTTATGAAAACAATAGGTCCAGACATG
SARS_coronavirus_Taiwan_TC1 TAGA-ACCAGAATATTTTAATTCAGTGTGCAGACTTATGAAAACAATAGGTCCAGACATG
Bat_coronavirus_(BtCoV/273/2005) TtGA-ACCtGAATAcTTTAAcTCgGTGTGCAGACTcATGAAAACAATAGGTCCtGACATG
BtRf-BetaCoV/HeB2013 TtGA-ACCtGAATAcTTTAAcTCgGTGTGCAGACTcATGAAAACAATAGGTCCtGACATG
SARS_CORONAVIRUS -----------------tCaTTaTtCTGt--AAtTTGacagCAgaaTtgGccCTTaAagc
Severe_acute_respiratory_syndrom TTCCTcGGAACTTGTCGgCGTTGTCCTGCTGAAATTGTTGACACTGTGAGTGCTTTgGTT
SARS_coronavirus_civet007 TTCCTTGGAACTTGTCGCCGTTGTCCTGCTGAAATTGTTGACACTGTGAGTGCTTTAGTT
SARS_coronavirus_GZ50 TTCCTTGGAACTTGTCGCCGTTGTCCTGCTGAAATTGTTGACACTGTGAGTGCTTTAGTT
SARS_coronavirus_Taiwan_TC1 TTCCTTGGAACTTGTCGCCGTTGTCCTGCTGAAATTGTTGACACTGTGAGTGCTTTAGTT
Bat_coronavirus_(BtCoV/273/2005) TTtCTTGGAACaTGTCGCCGTTGTCCTGCTGAAATTGTcGACACaGTGAGTGCTTTAGTT
BtRf-BetaCoV/HeB2013 TTtCTTGGAACaTGTCGCCGTTGTCCTGCTGAAATTGTcGACACaGTGAGTGCTTTAGTT
SARS_CORONAVIRUS TgTtACAATAAG--------AggCcAtGctAAaTtAGgTgAATtgTcCAtAcTaaTTTcA
Severe_acute_respiratory_syndrom TATGAtAATAAGCTtAAAGCACAtAAAGAcAAaTCAGCTCAATGCTTtAAAAT-GTTTTA
SARS_coronavirus_civet007 TATGACAATAAGCTAAAAGCACACAAgGAgAAGTCAGCTCAATGCTTCAAAAT-GTTcTA
SARS_coronavirus_GZ50 TATGACAATAAGCTAAAAGCACACAAgGAgAAGTCAGCTCAATGCTTCAAAAT-GTTcTA
SARS_coronavirus_Taiwan_TC1 TATGACAATAAGCTAAAAGCACACAAgGAtAAGTCAGCTCAATGCTTCAAAAT-GTTcTA
Bat_coronavirus_(BtCoV/273/2005) TATGAtAATAAGCTAAAAGCACACAAAGAaAAGTCAGCTCAATGCTTtAAgAT-GTTTTA
BtRf-BetaCoV/HeB2013 TATGAtAATAAGCTAAAAGCACACAAAGAaAAGTCAGCTCAATGCTTtAAAAT-GTTTTA
SARS_CORONAVIRUS CtAAGtTG--------aAcaATtTTaCtATCTGC-ATCtACAacC----------tGTTG
Severe_acute_respiratory_syndrom tAAgGGTGTTATCACgCATGATGTTTC-ATCTGCAATtAACAGgCCaCAAATAGGCGTgG
SARS_coronavirus_civet007 CAAAGGTGTTATtACACATGATGTTTC-ATCTGCAATCAACAGACCTCAAATAGGCGTTG
SARS_coronavirus_GZ50 CAAAGGTGTTATtACACATGATGTTTC-ATCTGCAATCAACAGACCTCAAATAGGCGTTG
SARS_coronavirus_Taiwan_TC1 CAAAGGTGTTATtACACATGATGTTTC-ATCTGCAATCAACAGACCTCAAATAGGCGTTG
Bat_coronavirus_(BtCoV/273/2005) CAAgGGTGTgATCACACATGATGTTTC-ATCTGCAATCAACAGgCCcCAAATAGGtGTTG
BtRf-BetaCoV/HeB2013 tAAgGGTGTgATCACACATGATGTTTC-ATCTGCAATCAACAGgCCcCAAATAGGtGTTG
SARS_CORONAVIRUS gA----------TTtCcCaCAATgCTGaTgcataAgtAaaTGTTgTaccATCaCACgTat
Severe_acute_respiratory_syndrom TAAGAGAATTcCTTACACGtAAcCCTGCTTGGAGAAAAGCTGTcTT--TATtTCACCT--
SARS_coronavirus_civet007 TAAGAGAATTTCTTACACGCAATCCTGCTTGGAGAAAAGCTGTTTT--TATCTCACCT--
SARS_coronavirus_GZ50 TAAGAGAATTTCTTACACGCAATCCTGCTTGGAGAAAAGCTGTTTT--TATCTCACCT--
SARS_coronavirus_Taiwan_TC1 TAAGAGAATTTCTTACACGCAATCCTGCTTGGAGAAAAGCTGTTTT--TATCTCACCT--
Bat_coronavirus_(BtCoV/273/2005) TAAGAGAgTTTCTTACgCGCAAcCCTGCTTGGAGAAAAGCTGTTTT--cATtTCACCa--
BtRf-BetaCoV/HeB2013 TAAGAGAgTTTCTTACgCGCAAcCCTGCTTGGAGAAAAGCTGTTTT--cATtTCACCa--
SARS_CORONAVIRUS ttttaTATgtgTtAtAGtcTGgTaTgaC------AAcCaTtaGtTTGgCT------gCTG
Severe_acute_respiratory_syndrom -----TATAATTCACAGAATGCTGTAGCcTCAAAgATtTTgGGAcTaCCaACtCAAACTG
SARS_coronavirus_civet007 -----TATAATTCACAGAAcGCTGTAGCTTCAAAAATCTTAGGATTGCCTACGCAgACTG
SARS_coronavirus_GZ50 -----TATAATTCACAGAAcGCTGTAGCTTCAAAAATCTTAGGATTGCCTACGCAgACTG
SARS_coronavirus_Taiwan_TC1 -----TATAATTCACAGAAcGCTGTAGCTTCAAAAATCTTAGGATTGCCTACGCAgACTG
Bat_coronavirus_(BtCoV/273/2005) -----TATAATTCACAGAATGCaGTgGCTTCtAAAATtTTAGGATTaCCcACtCAAACTG
BtRf-BetaCoV/HeB2013 -----TATAATTCACAGAATGCaGTgGCTTCtAAAATtTTAGGATTaCCcACtCAAACTG
SARS_CORONAVIRUS TTG-----TaAgAGG----------------TaTtATgTTCAagggAAC-------ACAa
Severe_acute_respiratory_syndrom TTGATTCATCACAGGGCTCaGAATATGACTATGTCATATTCACtCAAACCACTGAAACAG
SARS_coronavirus_civet007 TTGATTCATCACAGGGtTCTGAATATGACTATGTCATATTCACACAAACtACTGAAACAG
SARS_coronavirus_GZ50 TTGATTCATCACAGGGtTCTGAATATGACTATGTCATATTCACACAAACtACTGAAACAG
SARS_coronavirus_Taiwan_TC1 TTGATTCATCACAGGGtTCTGAATATGACTATGTCATATTCACACAAACtACTGAAACAG
Bat_coronavirus_(BtCoV/273/2005) TTGATTCtTCACAGGGCTCaGAgTATGACTATGTCATATTCACACAAACCACTGAgACcG
BtRf-BetaCoV/HeB2013 TTGAcTCtTCACAGGGCTCgGAgTATGACTATGTCATATTCACACAAACCACTGAgACcG
SARS_CORONAVIRUS CcatCTCTTGcAtTGTtgA------tAATGTtGtTg-----AGtGCAtcAtTatccaaCt
Severe_acute_respiratory_syndrom CtCACTCTTGTAATGTaAACaGaTTtAATGTtGCTATtACcAGAGCAAAAgT---aGGCA
SARS_coronavirus_civet007 CACACTCTTGTAATGTCAACCGCTTCAATGTGGCTATCACAAGgGCAAAAAT---TGGCA
SARS_coronavirus_GZ50 CACACTCTTGTAATGTCAACCGCTTCAATGTGGCTATCACAAGgGCAAAAAT---TGGCA
SARS_coronavirus_Taiwan_TC1 CACACTCTTGTAATGTCAACCGCTTCAATGTGGCTATCACAAGgGCAAAAAT---TGGCA
Bat_coronavirus_(BtCoV/273/2005) CACACTCTTGcAATGTCAACCGCTTtAATGTGGCTATCACAAGAGCAAAAAT---TGGCA
BtRf-BetaCoV/HeB2013 CACACTCTTGcAATGTCAACCGCTTCAATGTGGCTATCACAAGAGCAAAAAT---TGGCA
SARS_CORONAVIRUS TTcTaaGCATAgTG-------aAaAgCaTTgT------CTGCAtagcACtAGT-------
Severe_acute_respiratory_syndrom TacTtTGCATAATGTCTGATAGAGAcCTTTATGACAAgtTGCAATTTACAAGTCTtGAAA
SARS_coronavirus_civet007 TTTTGTGCATAATGTCTGATAGAGATCTTTATGACAAACTGCAATTTACAAGTCTAGAAA
SARS_coronavirus_GZ50 TTTTGTGCATAATGTCTGATAGAGATCTTTATGACAAACTGCAATTTACAAGTCTAGAAA
SARS_coronavirus_Taiwan_TC1 TTTTGTGCATAATGTCTGATAGAGATCTTTATGACAAACTGCAATTTACAAGTCTAGAAA
Bat_coronavirus_(BtCoV/273/2005) TTTTGTGCATAATGTCTGAcAGAGATCTTTATGAtAAgCTGCAATTTACgAGTCTgGAAg
BtRf-BetaCoV/HeB2013 TTTTGTGCATAATGTCTGAcAGAGATCTTTATGAtAAgCTGCAATTTACgAGTCTgGAAg
SARS_CORONAVIRUS ----------aAcTtTtGCcctcTTgtcctCAG-------AtCTaGcCTgTTTAtacatt
Severe_acute_respiratory_syndrom TtCCACGTaGgAATGTGGCaACtTTACAAGCtGAAAATGTAACaGGACTCTTTA------
SARS_coronavirus_civet007 TACCACGTCGCAATGTGGCTACATTACAAGCAGAAAATGTAACTGGACTtTTTA------
SARS_coronavirus_GZ50 TACCACGTCGCAATGTGGCTACATTACAAGCAGAAAATGTAACTGGACTtTTTA------
SARS_coronavirus_Taiwan_TC1 TACCACGTCGCAATGTGGCTACATTACAAGCAGAAAATGTAACTGGACTtTTTA------
Bat_coronavirus_(BtCoV/273/2005) TACCACGTCGCAATGTGGCTACgTTACAAGCAGAAAATGTAACTGGACTCTTTA------
BtRf-BetaCoV/HeB2013 TACCACGTCGCAATGTGGCTACgTTACAAGCAGAAAATGTAACTGGACTCTTTA------
SARS_CORONAVIRUS tGGgtcaTAGcttGATCAgccaTctTtTcCAaCtTACgttG---------CAtggCtGCa
Severe_acute_respiratory_syndrom AaGAtTGTAGTAAGgTaATcACTGGgtTaCATCCTACACAGGCACCTACACACCTCAGtG
SARS_coronavirus_civet007 AGGACTGTAGTAAGATCATTACTGGTCTTCATCCTACACAGGCACCTACACACCTCAGCG
SARS_coronavirus_GZ50 AGGACTGTAGTAAGATCATTACTGGTCTTCATCCTACACAGGCACCTACACACCTCAGCG
SARS_coronavirus_Taiwan_TC1 AGGACTGTAGTAAGATCATTACTGGTCTTCATCCTACACAGGCACCTACACACCTCAGCG
Bat_coronavirus_(BtCoV/273/2005) AGGACTGTAGTAAaATCATTACTGGTCTTCAcCCTACACAGGCACCgACACACCTCAGtG
BtRf-BetaCoV/HeB2013 AGGACTGTAGTAAGATCATTACTGGTCTTCAcCCTACACAGGCACCgACACACCTCAGtG
SARS_CORONAVIRUS TcacggTcAAATTCAgattT-----------------------AGcCAcAttcAAaGACt
Severe_acute_respiratory_syndrom TTGAcActAAATTCAAaACTGAAGGtTTATGTGTTGACATACCtGGCATACCtAAGGACA
SARS_coronavirus_civet007 TTGATATAAAgTTCAAGACTGAAGGATTATGTGTTGACATACCAGGCATACCAAAGGACA
SARS_coronavirus_GZ50 TTGATATAAAgTTCAAGACTGAAGGATTATGTGTTGACATACCAGGCATACCAAAGGACA
SARS_coronavirus_Taiwan_TC1 TTGATATAAAgTTCAAGACTGAAGGATTATGTGTTGACATACCAGGCATACCAAAGGACA
Bat_coronavirus_(BtCoV/273/2005) TTGATActAAATTCAAGACTGAAGGccTcTGTGTTGACATACCAGGCATACCtAAGGACA
BtRf-BetaCoV/HeB2013 TTGATActAAATTCAAGACTGAAGGccTcTGTGTTGACATACCAGGCATACCtAAGGACA
SARS_CORONAVIRUS TcttCaAC----------TtTtTAaGAacaacTTCAgAATcAccATTAgCA---------
Severe_acute_respiratory_syndrom TGACCTAtaGaAGACTCATCTCTATGATGGGTTTtAAAATGA--ATTAtCAAGTtAATGG
SARS_coronavirus_civet007 TGACCTACCGTAGACTCATCTCTATGATGGGTTTCAAAATGA--ATTACCAAGTCAATGG
SARS_coronavirus_GZ50 TGACCTACCGTAGACTCATCTCTATGATGGGTTTCAAAATGA--ATTACCAAGTCAATGG
SARS_coronavirus_Taiwan_TC1 TGACCTACCGTAGACTCATCTCTATGATGGGTTTCAAAATGA--ATTACCAAGTCAATGG
Bat_coronavirus_(BtCoV/273/2005) TGACCTAtCGcAGACTCATCTCTATGATGGGcTTCAAAATGA--AcTAtCAAGTCAATGG
BtRf-BetaCoV/HeB2013 TGACCTAtCGcAGACTCATCTCcATGATGGGcTTCAAAATGA--AcTAtCAAGTCAATGG
SARS_CORONAVIRUS ----------------AcagCCtGCtcAtAAGCTtcTtGagcaGTa---GCAaaagcTGc
Severe_acute_respiratory_syndrom TTACCCTAAcATGTTTATCACCCGCGAAGAAGCTATaaGaCAtGTaCGTGCATGGATTGG
SARS_coronavirus_civet007 TTACCCTcATATGTTTATCACCCGCGAAGAAGCTATTCGTCACGTTCGTGCgTGGATTGG
SARS_coronavirus_GZ50 TTACCCTAATATGTTTATCACCCGCGAAGAAGCTATTCGTCACGTTCGTGCgTGGATTGG
SARS_coronavirus_Taiwan_TC1 TTACCCTAATATGTTTATCACCCGCGAAGAAGCTATTCGTCACGTTCGTGCgTGGATTGG
Bat_coronavirus_(BtCoV/273/2005) TTACCCTAATATGTTTATCACCCGtGAAGAAGCcATTCGTCACGTTCGTGCATGGATTGG
BtRf-BetaCoV/HeB2013 TTACCCTAATATGTTTATCACCCGtGAAGAAGCcATTCGTCACGTTCGTGCATGGATTGG
SARS_CORONAVIRUS aTaTGATGgAagGG----------AACTAaActctGAgGCTaTaGcTtgTAAggTtgCcC
Severe_acute_respiratory_syndrom CTTcGATGTcGAGGGgTGTCATGCtACTAGA----GAaGCTGTtGGTACcAAttTACCTt
SARS_coronavirus_civet007 CTTTGATGTAGAGGGCTGTCATGCAACTAGA----GATGCTGTGGGTACTAACCTACCTC
SARS_coronavirus_GZ50 CTTTGATGTAGAGGGCTGTCATGCAACTAGA----GATGCTGTGGGTACTAACCTACCTC
SARS_coronavirus_Taiwan_TC1 CTTTGATGTAGAGGGCTGTCATGCAACTAGA----GATGCTGTGGGTACTAACCTACCTC
Bat_coronavirus_(BtCoV/273/2005) tTTcGAcGTtGAGGGtTGTCATGCAACaAGg----GATGCTGTGGGaACTAACCTACCaC
BtRf-BetaCoV/HeB2013 tTTcGAcGTtGAGGGtTGTCATGCAACaAGg----GATGCTGTGGGaACTAACCTACCaC
SARS_CORONAVIRUS TgttGtccaGcaTTTCTtCA-------------------cAaaGctTGtTTATGTc----
Severe_acute_respiratory_syndrom TaCAGCTAGGtTTTTCTACAGGTGTTAACcTAGTtGCTGTACCtACaGGTTATGTTGAtA
SARS_coronavirus_civet007 TCCAGCTAGGATTTTCTACAGGTGTTAACTTAGTAGCTGTACCGACTGGTTATGTTGACA
SARS_coronavirus_GZ50 TCCAGCTAGGATTTTCTACAGGTGTTAACTTAGTAGCTGTACCGACTGGTTATGTTGACA
SARS_coronavirus_Taiwan_TC1 TCCAGCTAGGATTTTCTACAGGTGTTAACTTAGTAGCTGTACCGACTGGTTATGTTGACA
Bat_coronavirus_(BtCoV/273/2005) TCCAatTAGGATTTTCgACAGGTGTTAACTTAGTAGCTGTACCcACTGGcTATGTTGACA
BtRf-BetaCoV/HeB2013 TCCAatTAGGATTTTCgACAGGTGTTAACTTAGTAGCTGTACCcACTGGcTATGTTGACA
SARS_CORONAVIRUS ----------tACAGcAccCtgCAtgG--AAaGCAAAAC--------aGaaAgtAGTgaA
Severe_acute_respiratory_syndrom CacctAATAAtACAGAtTTttCCAGAGTTAgTGCtAAACCaCCgCCtGGaGAtCAaTTTA
SARS_coronavirus_civet007 CTGAAAATAACACAGAATTCACCAGAGTTAATGCAAAACCTCCACCAGGTGACCAGTTTA
SARS_coronavirus_GZ50 CTGAAAATAACACAGAATTCACCAGAGTTAATGCAAAACCTCCACCAGGTGACCAGTTTA
SARS_coronavirus_Taiwan_TC1 CTGAAAATAACACAGAATTCACCAGAGTTAATGCAAAACCTCCACCAGGTGACCAGTTTA
Bat_coronavirus_(BtCoV/273/2005) CTGAgAATAACACAGAgTTCACtAGAGTcAATGCAAAACCTCCtCCAGGTGACCAaTTcA
BtRf-BetaCoV/HeB2013 CTGAgAATAAtACAGAgTTCACtAGAGTcAATGCAAAACCTCCtCCAGGTGACCAaTTcA
SARS_CORONAVIRUS AcCATtTT------------TtCAAAGGCT------------------------------
Severe_acute_respiratory_syndrom AACAcCTcATACCACTtATGTACAAAGGacTtCCtTGGAATGTAGTGCGTATaAAGATtG
SARS_coronavirus_civet007 AACATCTTATACCACTCATGTAtAAAGGCTTGCCCTGGAATGTAGTGCGTATTAAGATAG
SARS_coronavirus_GZ50 AACATCTTATACCACTCATGTAtAAAGGCTTGCCCTGGAATGTAGTGCGTATTAAGATAG
SARS_coronavirus_Taiwan_TC1 AACATCTTATACCACTCATGTAtAAAGGCTTGCCCTGGAATGTAGTGCGTATTAAGATAG
Bat_coronavirus_(BtCoV/273/2005) AACATCTTATACCACTaATGTACAAgGGCTTGCCCTGGAATGTtGTGCGTATTAAGATcG
BtRf-BetaCoV/HeB2013 AACATCTTATACCACTaATGTACAAgGGCTTGCCCTGGAATGTtGTGCGTATTAAGATcG
SARS_CORONAVIRUS ---------TCAGTagTAtctTtagctAAgaGAaTGTCA-------TtGTGT-----aac
Severe_acute_respiratory_syndrom TACAAATGtTaAGTGAcACACT----tAAAaatcTcTCtGACAGAGTCGTaTTtGTCtTa
SARS_coronavirus_civet007 TACAAATGCTCAGTGATACACT----GAAAGGATTGTCAGACAGAGTCGTGTTCGTCCTT
SARS_coronavirus_GZ50 TACAAATGCTCAGTGATACACT----GAAAGGATTGTCAGACAGAGTCGTGTTCGTCCTT
SARS_coronavirus_Taiwan_TC1 TACAAATGCTCAGTGATACACT----GAAAGGATTGTCAGACAGAGTCGTGTTCGTCCTT
Bat_coronavirus_(BtCoV/273/2005) TACAAATGCTCAGTGAcACgCT----GAAgGGATTGTCtGACAGAGTCGTGTTtGTCCTT
BtRf-BetaCoV/HeB2013 TACAAATGCTCAGTGAcACgCT----GAAgGGATTaTCtGACAGAGTCGTGTTtGTCCTT
SARS_CORONAVIRUS TGGaCaCA-----TTGAGCccACAattTagATGAtGatTcTacTCtgagTTGttgcaaAa
Severe_acute_respiratory_syndrom TGGGCaCATGGCTTTGAGtTgACA---TCtATGAAGTATTTTGTgAAaATaG-----GAC
SARS_coronavirus_civet007 TGGGCGCATGGCTTTGAGCTTACA---TCAATGAAGTAcTTTGTCAAGATTG-----GAC
SARS_coronavirus_GZ50 TGGGCGCATGGCTTTGAGCTTACA---TCAATGAAGTAcTTTGTCAAGATTG-----GAC
SARS_coronavirus_Taiwan_TC1 TGGGCGCATGGCTTTGAGCTTACA---TCAATGAAGTAcTTTGTCAAGATTG-----GAC
Bat_coronavirus_(BtCoV/273/2005) TGGGCtCATGGCTTTGAaCTTACA---TCAATGAAGTATTTTGTCAAGATTG-----GAC
BtRf-BetaCoV/HeB2013 TGGGCtCATGGCTTTGAaCTTACA---TCAATGAAGTATTTTGTCAAGATTG-----GAC
SARS_CORONAVIRUS CTGAgAGtAaGacT----------ACtgAtGTGCActTTa-----------CATCtGACA
Severe_acute_respiratory_syndrom CTGAgcGcACcTGTTGTCTaTGTGAtAgACGTGCcACaTGCTTTTCcACTgCtTCAGACA
SARS_coronavirus_civet007 CTGAAAGAACGTGTTGTCTGTGTGACAAACGTGCAACTTGCTTTTCTACTTCATCAGAtA
SARS_coronavirus_GZ50 CTGAAAGAACGTGTTGTCTGTGTGACAAACGTGCAACTTGCTTTTCTACTTCATCAGAtA
SARS_coronavirus_Taiwan_TC1 CTGAAAGAACGTGTTGTCTGTGTGACAAACGTGCAACTTGCTTTTCTACTTCATCAGAtA
Bat_coronavirus_(BtCoV/273/2005) CaGAAAGAACGTGTTGTCTGTGTGACAAgCGTGCAACTTGCTTcTCTACTTCATCtGACA
BtRf-BetaCoV/HeB2013 CaGAAAGAACGTGTTGTCTGTGTGACAAgCGTGCAACTTGCTTcTCTACTTCATCtGACA
SARS_CORONAVIRUS tTTtaGaCTG---------TaCaGTGG-------CTActTtgATAcaaggTTTgccAcca
Severe_acute_respiratory_syndrom CTTATGCCTGtTGGcATCATTCTaTtGGaTTTGAtTAcGTCTATAAtCCgTTTATGATTG
SARS_coronavirus_civet007 CTTATGCCTGCTGGAATCATTCTGTGGGTTTTGACTATGTCTATAACCCATTTATGATTG
SARS_coronavirus_GZ50 CTTATGCCTGCTGGAATCATTCTGTGGGTTTTGACTATGTCTATAACCCATTTATGATTG
SARS_coronavirus_Taiwan_TC1 CTTATGCCTGCTGGAATCATTCTGTGGGTTTTGACTATGTCTATAACCCATTTATGATTG
Bat_coronavirus_(BtCoV/273/2005) CTTATGCtTGCTGGAAcCAcTCTGTGGGTTTTGACTATGTCTAcAACCCATTcATGATTG
BtRf-BetaCoV/HeB2013 CTTATGCtTGCTGGAATCAcTCTGTGGGTTTTGACTATGTCTAcAACCCgTTTATGATTG
SARS_CORONAVIRUS AcaccCAaCAAT------TTAatGtTgAgtTTgAagGCAtCtATGct----ATTcTtgGG
Severe_acute_respiratory_syndrom ATGTTCAaCAATGGGGtTTTACAGGTAACCTaCAaAGCAACCATGAtCtgtATTGTCAaG
SARS_coronavirus_civet007 ATGTTCAGCAgTGGGGCTTTACgGGTAACCTTCAGAGtAACCATGACCAACATTGcCAGG
SARS_coronavirus_GZ50 ATGTTCAGCAgTGGGGCTTTACgGGTAACCTTCAGAGtAACCATGACCAACATTGcCAGG
SARS_coronavirus_Taiwan_TC1 ATGTTCAGCAgTGGGGCTTTACgGGTAACCTTCAGAGtAACCATGACCAACATTGcCAGG
Bat_coronavirus_(BtCoV/273/2005) ATGTcCAGCAATGGGGCTTTACAGGTAACCTTCAGAGCAACCATGACCAACAcTGTCAaG
BtRf-BetaCoV/HeB2013 ATGTcCAGCAATGGGGtcTTACAGGTAACCTTCAGAGCAACCATGAtCAACAcTGTCAaG
SARS_CORONAVIRUS TgggagtagtcCcTGtgAATtCAtATaT--CTAaac---------TCcTGtgTAGAaacT
Severe_acute_respiratory_syndrom Tc---------CATGGtAATGCACATGTaGCTAGTTGTGATGCaATCATGACTAGgTGTc
SARS_coronavirus_civet007 TA---------CATGGAAATGCACATGTGGCTAGTTGTGATGCTATCATGACTAGATGTT
SARS_coronavirus_GZ50 TA---------CATGGAAATGCACATGTGGCTAGTTGTGATGCTATCATGACTAGATGTT
SARS_coronavirus_Taiwan_TC1 TA---------CATGGAAATGCACATGTGGCTAGTTGTGATGCTATCATGACTAGATGTT
Bat_coronavirus_(BtCoV/273/2005) Tg---------CATGGtAAcGCtCATGTGGCTAGcTGTGATGCTATCATGACTAGATGTc
BtRf-BetaCoV/HeB2013 Tg---------CATGGtAATGCtCATGTGGCTAGTTGTGATGCcATCATGACTAGATGTc
SARS_CORONAVIRUS aAGtAaTCataaaCAccAagagTcaGTctAaaGtagcGgTTG------------------
Severe_acute_respiratory_syndrom TAGCtGTC-----CAcGAGTGCTTTGTTAAGCGtGTTGAcTGGaCTaTTGAATAtCCTAT
SARS_coronavirus_civet007 TAGCAGTC-----CATGAGTGCTTTGTTAAGCGCGTTGATTGGTCTGTTGAATACCCTAT
SARS_coronavirus_GZ50 TAGCAGTC-----CATGAGTGCTTTGTTAAGCGCGTTGATTGGTCTGTTGAATACCCTAT
SARS_coronavirus_Taiwan_TC1 TAGCAGTC-----CATGAGTGCTTTGTTAAGCGCGTTGATTGGTCTGTTGAATACCCTAT
Bat_coronavirus_(BtCoV/273/2005) TtGCAGTC-----CATGAGTGCTTTGTTAAGCGCGTTGATTGGTCTGTTGAATACCCggT
BtRf-BetaCoV/HeB2013 TtGCAGTC-----CATGAGTGCTTTGTTAAGCGCGTTGATTGGTCTGTTGAATACCCgAT
SARS_CORONAVIRUS ---AGtAaAcaAA--agAGGccAAaGtAaCaaGtAcAAAAaTAgcctAAgAaAcaaT---
Severe_acute_respiratory_syndrom aATtGGtGATGAACTGAAGaTTAATGCgGCTTGtAGAAAgGTt---CAACACATGGTTGT
SARS_coronavirus_civet007 TATAGGAGATGAACTGAgGGTTAATtCtGCTTGCAGAAAAGTA---CAACACATGGTTGT
SARS_coronavirus_GZ50 TATAGGAGATGAACTGAgGGTTAATtCtGCTTGCAGAAAAGTA---CAACACATGGTTGT
SARS_coronavirus_Taiwan_TC1 TATAGGAGATGAACTGAgGGTTAATtCtGCTTGCAGAAAAGTA---CAACACATGGTTGT
Bat_coronavirus_(BtCoV/273/2005) TATtGGAGATGAACTGAAGaTcAATGCAGCTTGCAGAAAAGTA---CAgCAtATGGTTGT
BtRf-BetaCoV/HeB2013 TATtGGAGATGAACTGAAGaTcAAcGCAGCaTGCAGAAAAGTA---CAgCACATGGTTGT
SARS_CORONAVIRUS -AAactaGCATTatacaCTGAagTgtaTTaCCAGTTaTgaAgaAaATaGGgcaAtActCA
Severe_acute_respiratory_syndrom tAAagCTGCATTatTaGCaGA--cAAaTTCCCAGTTCTTCAcGACATTGG---tAAcCCt
SARS_coronavirus_civet007 GAAGTCTGCATTGCTTGCTGA--TAAGTTtCCAGTTCTTCATGACATTGG---AAATCCA
SARS_coronavirus_GZ50 GAAGTCTGCATTGCTTGCTGA--TAAGTTtCCAGTTCTTCATGACATTGG---AAATCCA
SARS_coronavirus_Taiwan_TC1 GAAGTCTGCATTGCTTGCTGA--TAAGTTtCCAGTTCTTCATGACATTGG---AAATCCA
Bat_coronavirus_(BtCoV/273/2005) tAAGTCTGCATTGCTTGCTGA--cAAGTTCCCAGTTCTgCATGAtATaGG---AAATCCA
BtRf-BetaCoV/HeB2013 tAAaTCTGCATTGCTTGCTGA--TAAGTTCCCAGTTCTTCATGAtATaGG---AAATCCA
SARS_CORONAVIRUS AcacacATaAAaacaaTACCTCtGGCcaAA--AacATGacAGTTgtaaCTACaccTGagt
Severe_acute_respiratory_syndrom AAaGCTATtAAGTGTGTACCTCAaGCTGAtGTAGAATGGAAGTT----CTAtG-ATGCaC
SARS_coronavirus_civet007 AAGGCTATCAAGTGTGTgCCTCAGGCTGAAGTAGAATGGAAGTT----CTACG-ATGCTC
SARS_coronavirus_GZ50 AAGGCTATCAAGTGTGTgCCTCAGGCTGAAGTAGAATGGAAGTT----CTACG-ATGCTC
SARS_coronavirus_Taiwan_TC1 AAGGCTATCAAGTGTGTgCCTCAGGCTGAAGTAGAATGGAAGTT----CTACG-ATGCTC
Bat_coronavirus_(BtCoV/273/2005) AAGGCTATtAAaTGTGTACCgCAGGCTGAcGTAGAATGGAAGTT----CTACG-ATGtTC
BtRf-BetaCoV/HeB2013 AAGGCcATtAAaTGTGTACCgCAGGCTGAcGTAGAATGGAAGTT----CTACG-ATGCTC
SARS_CORONAVIRUS AGttA-GaAGTaACAgAGaTTATAAg----------------------------------
Severe_acute_respiratory_syndrom AGCCtTGTAGTGACAAAGCTTATAAAATAGAAGAAtTaTTCTATTCTTATGCCACACATt
SARS_coronavirus_civet007 AGCCATGTAGTGACAAAGCTTAcAAAATAGAgGAACTCTTCTATTCTTATGCtACACATC
SARS_coronavirus_GZ50 AGCCATGTAGTGACAAAGCTTAcAAAATAGAgGAACTCTTCTATTCTTATGCtACACATC
SARS_coronavirus_Taiwan_TC1 AGCCATGTAGTGACAAAGCTTAcAAAATAGAgGAgCTCTTCTATTCTTATGCtACACATC
Bat_coronavirus_(BtCoV/273/2005) AGCCATGcAGTGACAAgGCTTATAAgATAGAAGAACTCTTCTAcTCcTATGCCACcCAcC
BtRf-BetaCoV/HeB2013 AGCCATGcAGTGACAAgGCTTATAAgATAGAAGAACTCTTCTATTCcTATGCCACcCAcC
SARS_CORONAVIRUS ------AgccCAC--ATGGaaaTgGCTTGaTcTaaAgcatTAcCaTa-------------
Severe_acute_respiratory_syndrom ctGACAAATTCACaGATGGTGTaTGCcTaTTTTGGAATTGcAAtGTcGATaGaTAtCCtG
SARS_coronavirus_civet007 ACGAtAAATTCACTGATGGTGTTTGtTTGTTTTGGAATTGTAACGTTGATCGTTACCCAG
SARS_coronavirus_GZ50 ACGAtAAATTCACTGATGGTGTTTGtTTGTTTTGGAATTGTAACGTTGATCGTTACCCAG
SARS_coronavirus_Taiwan_TC1 ACGAtAAATTCACTGATGGTGTTTGtTTGTTTTGGAATTGTAACGTTGATCGTTACCCAG
Bat_coronavirus_(BtCoV/273/2005) AtGACAAATTCACTGATGGTGTTTGCTTGTTTTGGAAcTGTAACGTTGATCGTTAtCCAG
BtRf-BetaCoV/HeB2013 AtGACAAATTCACTGATGGTGTTTGCTTGTTTTGGAAcTGTAACGTTGATCGTTACCCgG
SARS_CORONAVIRUS ---------------aTAaacTTtAtAaAcGAG---TGTCAA------------------
Severe_acute_respiratory_syndrom CtAATtCcATTGTtTGTAGaTTTGACACtAGAGTgcTaTCtAACcTtAACTTgCCtGGtT
SARS_coronavirus_civet007 CCAATGCAATTGTGTGTAGGTTTGACACAAGAGTCTTGTCAAACTTGAACTTACCAGGCT
SARS_coronavirus_GZ50 CCAATGCAATTGTGTGTAGGTTTGACACAAGAGTCTTGTCAAACTTGAACTTACCAGGCT
SARS_coronavirus_Taiwan_TC1 CCAATGCAATTGTGTGTAGGTTTGACACAAGAGTCTTGTCAAACTTGAACTTACCAGGCT
Bat_coronavirus_(BtCoV/273/2005) CCAATGCtATcGTtTGTAGGTTTGAtACAcGAGTtcTcTCcAAtcTaAACcTACCtGGtT
BtRf-BetaCoV/HeB2013 CCAAcGCAATTGTtTGTAGGTTTGAtACAAGAGTtTTaTCtAACTTaAACcTACCtGGtT
SARS_CORONAVIRUS ---------GacaTTcaTAaGTG-------------TCCACACTCt--------------
Severe_acute_respiratory_syndrom GTGATGGTGGcAGTTTGTATGTaAATAAACATGCATTCCACACaCCAGCTTTtGATAAAA
SARS_coronavirus_civet007 GTGATGGTGGTAGTTTGTATGTGAATAAgCATGCATTCCACACTCCAGCTTTCGATAAAA
SARS_coronavirus_GZ50 GTGATGGTGGTAGTTTGTATGTGAATAAgCATGCATTCCACACTCCAGCTTTCGATAAAA
SARS_coronavirus_Taiwan_TC1 GTGATGGTGGTAGTTTGTATGTGAATAAgCATGCATTCCACACTCCAGCTTTCGATAAAA
Bat_coronavirus_(BtCoV/273/2005) GTGATGGTGGTAGTcTGTATGTaAAcAAACATGCATTCCACACTCCAGCTTTtGATAAgA
BtRf-BetaCoV/HeB2013 GTGATGGcGGTAGTcTGTATGTaAAcAAACATGCATTCCACACgCCAGCcTTtGATAAgA
SARS_CORONAVIRUS -------------ccTAgcACcATcatCATaC-------------AcAGTtCTTGc----
Severe_acute_respiratory_syndrom GTGCtTTTgtTAATTTAAAACAATTaCCATTtTTcTAtTAcTCTGAcAGTCCaTGTGAGT
SARS_coronavirus_civet007 GTGCATTTACTAATTTAAAgCAATTGCCtTTCTTTTACTATTCTGATAGTCCTTGTGAGT
SARS_coronavirus_GZ50 GTGCATTTACTAATTTAAAgCAATTGCCtTTCTTTTACTATTCTGATAGTCCTTGTGAGT
SARS_coronavirus_Taiwan_TC1 GTGCATTTACTAATTTAAAgCAATTGCCtTTCTTTTACTATTCTGATAGTCCTTGTGAGT
Bat_coronavirus_(BtCoV/273/2005) GTGCATTTACTcATTTgAAACAAcTGCCATTCTTTTAtTAcTCTGATAGTCCTTGcGAGT
BtRf-BetaCoV/HeB2013 GTGCtTTTtCTAATcTtAAACAATTGCCcTTtTTcTAtTATTCaGAcAGTCCcTGTGAGT
SARS_CORONAVIRUS ------------------TGTC--ATAagGATTA-GTaaCACT-AcAgCTGaTgCaTacA
Severe_acute_respiratory_syndrom CTCATGGaAAACAAGTAGTGTCAGATATaGATTATGTaCCACTaAAgTCTGCTACGTGTA
SARS_coronavirus_civet007 CTCATGGCAAACAAGTAGTGTCgGATATTGATTATGTTCCACTCAAATCTGCTACGTGTA
SARS_coronavirus_GZ50 CTCATGGCAAACAAGTAGTGTCgGATATTGATTATGTTCCACTCAAATCTGCTACGTGTA
SARS_coronavirus_Taiwan_TC1 CTCATGGCAAACAAGTAGTGTCgGATATTGATTATGTTCCACTCAAATCTGCTACGTGTA
Bat_coronavirus_(BtCoV/273/2005) CgCATGGCAAgCAgGTtGTGTCAGAcATTGATTATGTTCCACTaAAgTCTGCaACGTGTA
BtRf-BetaCoV/HeB2013 CTCATGGCAAACAgGTgGTGTCAGATATTGATTATGTTCCACTCAAATCTGCTACGTGTA
SARS_CORONAVIRUS TaACACagT---------------CTtTTaGCttaAaACCAgaCAAActAGTAtCaACca
Severe_acute_respiratory_syndrom TaACACGtTGCAATTTAGGTGGTGCTGTcTGt-AGACAtCATGCtAATGAGTACaGAttG
SARS_coronavirus_civet007 TTACACGATGCAATTTgGGTGGTGCTGTTTGC-AGACACCATGCAAATGAGTACCGACAG
SARS_coronavirus_GZ50 TTACACGATGCAATTTAGGTGGTGCTGTTTGC-AGACACCATGCAAATGAGTACCGACAG
SARS_coronavirus_Taiwan_TC1 TTACACGATGCAATTTAGGTGGTGCTGTTTGC-AGACACCATGCAAATGAGTACCGACAG
Bat_coronavirus_(BtCoV/273/2005) TTACACGtTGCAAccTgGGTGGaGCTGTTTGC-AGACAtCATGCAAATGAGTAtaGACAG
BtRf-BetaCoV/HeB2013 TaACACGgTGCAAcTTAGGTGGaGCTGTTTGC-AGACAtCATGCAAATGAGTAtaGACAa
SARS_CORONAVIRUS TAtccA-------AccATgTcATaA------------------TAcGcATcacCcAACtA
Severe_acute_respiratory_syndrom TAtcTcGATGCtTATAAcATGATGATcTCaGCTGGcTTTAGCtTgTGGgTTTACAAACAA
SARS_coronavirus_civet007 TACTTgGATGCATATAATATGATGATTTCTGCTGGATTTAGCCTATGGATTTACAAACAA
SARS_coronavirus_GZ50 TACTTgGATGCATATAATATGATGATTTCTGCTGGATTTAGCCTATGGATTTACAAACAA
SARS_coronavirus_Taiwan_TC1 TACTTgGATGCATATAATATGATGATTTCTGCTGGATTTAGCCTATGGATTTACAAACAA
Bat_coronavirus_(BtCoV/273/2005) TACTTAGATGCATAcAAcATGATGATTTCaGCTGGtTTTAGCCTATGGATTTACAAACAg
BtRf-BetaCoV/HeB2013 TACTTAGATGCATATAAcATGATGATTTCTGCcGGcTTTAGCCTcTGGATTTACAAACAg
SARS_CORONAVIRUS gcaGgcAtaTAgAcCaTaTtaA--------AatAaGcTACAGtGgcaAGAgAAgGTaaCa
Severe_acute_respiratory_syndrom TTTGATACTTATAACCTcTGGAAcACtTTTACaAGacTtCAGAGTTTAGAAAATGTGGCT
SARS_coronavirus_civet007 TTTGATACTTATAACCTGTGGAATACATTTACCAGGTTACAGAGTTTAGAAAATGTGGCT
SARS_coronavirus_GZ50 TTTGATACTTATAACCTGTGGAATACATTTACCAGGTTACAGAGTTTAGAAAATGTGGCT
SARS_coronavirus_Taiwan_TC1 TTTGATACTTATAACCTGTGGAATACATTTACCAGGTTACAGAGTTTAGAAAATGTGGCT
Bat_coronavirus_(BtCoV/273/2005) TTTGAcACaTAcAACCTGTGGAAcACcTTTACCAGGTTACAGAGTcTAGAAAATGTGGCT
BtRf-BetaCoV/HeB2013 TTcGATACaTATAACCTGTGGAATACcTTTACCAGGTTACAGAGTcTAGAAAATGTGGCT
SARS_CORONAVIRUS aAaA------caAAcAgAGaAatgCAtgcttatgTTTGAcaaACAtCAttGcaaAAGCAg
Severe_acute_respiratory_syndrom TtTAATGTTGTaAATAAgGGA---CAC-------TTTGATGGACA-acagGGtGAAGtAC
SARS_coronavirus_civet007 TATAATGTTGTTAATAAAGGA---CAC-------TTTGATGGACA-CgCCGGCGAAGCAC
SARS_coronavirus_GZ50 TATAATGTTGTTAATAAAGGA---CAC-------TTTGATGGACA-CgCCGGCGAAGCAC
SARS_coronavirus_Taiwan_TC1 TATAATGTTGTTAATAAAGGA---CAC-------TTTGATGGACA-CgCCGGCGAAGCAC
Bat_coronavirus_(BtCoV/273/2005) TAcAATGTTaTTAATAAAGGA---CAC-------TTTGATGGACA-gAttGGCGAAGCAC
BtRf-BetaCoV/HeB2013 TAcAATGTTaTTAATAAAGGA---CAC-------TTTGATGGACA-gAttGGCGAAGtAC
SARS_CORONAVIRUS acaT-------AgcAATAATaCccaTagCAaAAgGtaAaAaGGcAT-------------T
Severe_acute_respiratory_syndrom CaGTTTCtATCATTAATAAcaCTGTTTACACAAAaGTtGATGGTgTTGATGTaGAatTgT
SARS_coronavirus_civet007 CTGTTTCCATCATTAATAATGCTGTTTACACAAAGGTAGATGGTATTGATGTGGAGATCT
SARS_coronavirus_GZ50 CTGTTTCCATCATTAATAATGCTGTTTACACAAAGGTAGATGGTATTGATGTGGAGATCT
SARS_coronavirus_Taiwan_TC1 CTGTTTCCATCATTAATAATGCTGTTTACACAAAGGTAGATGGTATTGATGTGGAGATCT
Bat_coronavirus_(BtCoV/273/2005) CTGTgTCtATCATcAATAATGCTGTTTACACtAAaGTAGAcGGcgTTGATGTGGAGATCT
BtRf-BetaCoV/HeB2013 CTGTgTCtATCATcAATAATGCTGTTTACACtAAaGTAGAcGGcgTTGATGTGGAGATCT
SARS_CORONAVIRUS TTcAtAcaAAaAaAACACTggtaaTTAccagTGtAcTcactAGCacaaG--TAAatGTAc
Severe_acute_respiratory_syndrom TTGAAAATAAaACAACAtTaCCTGTTAATGTaGCATTTG--AGCTTTGGGCTAAGCGcAA
SARS_coronavirus_civet007 TTGAAAATAAGACAACACTTCCTGTTAATGTTGCATTTG--AGCTTTGGGCTAAGCGTAA
SARS_coronavirus_GZ50 TTGAAAATAAGACAACACTTCCTGTTAATGTTGCATTTG--AGCTTTGGGCTAAGCGTAA
SARS_coronavirus_Taiwan_TC1 TTGAAAATAAGACAACACTTCCTGTTAATGTTGCATTTG--AGCTTTGGGCTAAGCGTAA
Bat_coronavirus_(BtCoV/273/2005) TcGAgAAcAAGACAACACTTCCTGTgAATGTaGCgTTTG--AGCTTTGGGCTAAGCGTAA
BtRf-BetaCoV/HeB2013 TcGAgAAcAAGACAAtACTTCCTGTgAATGTaGCgTTTG--AGCTTTGGGCTAAaCGcAA
SARS_CORONAVIRUS CAT---------------GcTTAAGttcATACTgAgcAggT--GGTGcTGACATCataaC
Severe_acute_respiratory_syndrom CATTAAACCAGTaCCAGAGgTgAAa---ATACTCAATAATTTGGGTGTgGACATtGCTGC
SARS_coronavirus_civet007 CATTAAACCAGTGCCAGAGATTAAG---ATACTCAATAATTTGGGTGTTGAtATCGCTGC
SARS_coronavirus_GZ50 CATTAAACCAGTGCCAGAGATTAAG---ATACTCAATAATTTGGGTGTTGAtATCGCTGC
SARS_coronavirus_Taiwan_TC1 CATTAAACCAGTGCCAGAGATTAAG---ATACTCAATAATTTGGGTGTTGAtATCGCTGC
Bat_coronavirus_(BtCoV/273/2005) CATcAAgCCAGTGCCAGAGATTAAG---ATACTtAAcAATTTGGGTGTcGACATCGCTGC
BtRf-BetaCoV/HeB2013 CATcAAgCCAGTGCCAGAGATTAAG---ATACTtAAcAATTTGGGTGTcGACATCGCTGC
SARS_CORONAVIRUS aAAaggTGactcCTG---tTgtActAGAtAttttgtAGCttgTtTAcCacacgTACAA--
Severe_acute_respiratory_syndrom TAATACTGTgATCTGGGACTACAAAAGAGAtGCtCCAGCACATaTATC-----TACtATt
SARS_coronavirus_civet007 TAATACTGTAATCTGGGACTACAAAAGAGAAGCCCCAGCACATGTATC-----TACAATA
SARS_coronavirus_GZ50 TAATACTGTAATCTGGGACTACAAAAGAGAAGCCCCAGCACATGTATC-----TACAATA
SARS_coronavirus_Taiwan_TC1 TAATACTGTAATCTGGGACTACAAAAGAGAAGCCCCAGCACATGTATC-----TACAATA
Bat_coronavirus_(BtCoV/273/2005) cAATACTGTtATCTGGGACTACAAAAGAGAAGCgCCAGCACATGTcTC-----aACAATA
BtRf-BetaCoV/HeB2013 cAATACTGTtATCTGGGACTACAAAAGAGAAGCaCCAGCACATGTcTC-----aACAATA
SARS_CORONAVIRUS GGTaTCTGaACAccTttCTtAaATTGttcAtAA-------GAAAGTG--TGccCaTgtAC
Severe_acute_respiratory_syndrom GGTGTtTGttCt-ATGACTGACATaGCCAAGAAACCaACTGAAAcgatTTGTgCac-CAC
SARS_coronavirus_civet007 GGTGTCTGCACA-ATGACTGACATTGCCAAGAAACCTACTGAgAGTGCTTGTTCTT-CAC
SARS_coronavirus_GZ50 GGTGTCTGCACA-ATGACTGACATTGCCAAGAAACCTACTGAgAGTGCTTGTTCTT-CAC
SARS_coronavirus_Taiwan_TC1 GGTGTCTGCACA-ATGACTGACATTGCCAAGAAACCTACTGAgAGTGCTTGTTCTT-CAC
Bat_coronavirus_(BtCoV/273/2005) GGTaTCTGCACA-ATGACTGACATTGCCAAGAAACCTACTGAAAGcGCTTGTTCgT-CgC
BtRf-BetaCoV/HeB2013 GGTaTCTGCACA-ATGACTGACATTGCCAAGAAACCTACTGAAAGcGCTTGTTCgT-CgC
SARS_CORONAVIRUS aTAacagCTTcT---------------------------------------ACaCCCtTA
Severe_acute_respiratory_syndrom TcACTGTCTTtTTTGATGGTAGAGTtGAtGGtCAaGTAGACtTATTTAGAAAtGCCCGTA
SARS_coronavirus_civet007 TTACTGTCTTGTTTGATGGTAGAGTGGAAGGACAGGTAGACCTtTTTAGAAACGCCCGTA
SARS_coronavirus_GZ50 TTACTGTCTTGTTTGATGGTAGAGTGGAAGGACAGGTAGACCTtTTTAGAAACGCCCGTA
SARS_coronavirus_Taiwan_TC1 TTACTGTCTTGTTTGATGGTAGAGTGGAAGGACAGGTAGACCTtTTTAGAAACGCCCGTA
Bat_coronavirus_(BtCoV/273/2005) TTACcGTCTTaTTcGATGGTAGAGTtGAAGGACAGGTtGACtTATTcAGAAAtGCaCGTA
BtRf-BetaCoV/HeB2013 TTACTGTCTTaTTcGATGGTAGAGTtGAAGGACAGGTtGACtTATTcAGAAAtGCaCGTA
SARS_CORONAVIRUS AgGGTtgTcTgcTg---------TtgtcCAcAaGTTTtACACaccaCgTtcAAGactCtt
Severe_acute_respiratory_syndrom ATGGTGTTcTtATtACAGAAGGTagtGTtAAAGGTTTAcaAC----CATCtgtaGGtCCc
SARS_coronavirus_civet007 ATGGTGTTTTAATAACAGAAGGTTCAGTCAAAGGTcTAACAC----CtTCAAAGGGACCA
SARS_coronavirus_GZ50 ATGGTGTTTTAATAACAGAAGGTTCAGTCAAAGGTcTAACAC----CtTCAAAGGGACCA
SARS_coronavirus_Taiwan_TC1 ATGGTGTTTTAATAACAGAAGGTTCAGTCAAAGGTcTAACAC----CtTCAAAGGGACCA
Bat_coronavirus_(BtCoV/273/2005) ATGGTGTTTTAATAACgGAAGGTTCAGTCAAgGGTTTAACAC----CATCAAAaGGACCt
BtRf-BetaCoV/HeB2013 ATGGTGTTTTAATAACgGAAGGTTCAGTCAAgGGTTTAACAC----CATCAAAaGGACCt
SARS_CORONAVIRUS ttgCAAG--AaTcTaAATtGg--CAtgTT-------GAAaCAagtAActCAttGTTTctC
Severe_acute_respiratory_syndrom aaACAAGCTAGTcTtAATGGAGTCACATTAATTGGAGAAgCcGTAAAAACACAGTTcAAt
SARS_coronavirus_civet007 GCACAAGCTAGcGTCAATGGAGTCACATTAATTGGAGAATCAGTAAAAACACAGTTTAAC
SARS_coronavirus_GZ50 GCACAAGCTAGcGTCAATGGAGTCACATTAATTGGAGAATCAGTAAAAACACAGTTTAAC
SARS_coronavirus_Taiwan_TC1 GCACAAGCTAGcGTCAATGGAGTCACATTAATTGGAGAATCAGTAAAAACACAGTTTAAC
Bat_coronavirus_(BtCoV/273/2005) GtgCAAGCaAGTGTCAATGGAGTCACATTgATTGGAGAATCAGTAAAAACACAGTTTAAt
BtRf-BetaCoV/HeB2013 GtgCAAGCaAGTGTCAATGGAGTCACATTgATTGGAGAATCAGTAAAAACACAGTTTAAt
SARS_CORONAVIRUS TA-----------------aCATcAcCtAAC--TcaCCTa----CTgtcTTA--------
Severe_acute_respiratory_syndrom TAtTaTAAGAAAGTtGAtGGtgTTgTCCAACAATTaCCTGAAACtTACTTTACTCAGAGt
SARS_coronavirus_civet007 TACTTTAAGAAAGTAGACGGCATTATtCAACAgTTGCCTGAAACCTACTTTACTCAGAGC
SARS_coronavirus_GZ50 TACTTTAAGAAAGTAGACGGCATTATtCAACAgTTGCCTGAAACCTACTTTACTCAGAGC
SARS_coronavirus_Taiwan_TC1 TACTTTAAGAAAGTAGACGGCATTATtCAACAgTTGCCTGAAACCTACTTTACTCAGAGC
Bat_coronavirus_(BtCoV/273/2005) TAtTTcAAGAAAGTAGAtGGCATcATCCAACAATTGCCTGAAACCTACTTTACaCAGAGt
BtRf-BetaCoV/HeB2013 TAtTTcAAGAAAGTAGAtGGCATcATCCAACAATTGCCTGAAACCTACTTTACaCAGAGt
SARS_CORONAVIRUS ------TTAcAGtAggcTAAGataAGtgCACAAAaGttAgCaGctTcaCcaGccCTtGCT
Severe_acute_respiratory_syndrom AGAaAtTTAcAaGAaTTTAAaCCCAGgagtCAAATGGAAAtTGAtTTCtTaGAatTaGCT
SARS_coronavirus_civet007 AGAGACTTAGAGGATTTTAAGCCCAGATCACAAATGGAAACTGACTTtCTCGAGCTCGCT
SARS_coronavirus_GZ50 AGAGACTTAGAGGATTTTAAGCCCAGATCACAAATGGAAACTGACTTtCTCGAGCTCGCT
SARS_coronavirus_Taiwan_TC1 AGAGACTTAGAGGATTTTAAGCCCAGATCACAAATGGAAACTGACTTtCTCGAGCTCGCT
Bat_coronavirus_(BtCoV/273/2005) AGAGACTTAGAGGATTTTAAGCCCAGATCACAAATGGAAACgGACTTCCTCGAGCTCGCa
BtRf-BetaCoV/HeB2013 AGAGACTTAGAGGATTTTAAGCCCAGATCACAAATGGAAACgGACTTCCTCGAGCTCGCa
SARS_CORONAVIRUS cTGtA-----------------ATAAGC---------ATcttgTaGAgCAggTgGaTT--
Severe_acute_respiratory_syndrom ATGGATGAATTCATtgAaCGgTATAAatTAGAaGGCTATGCCTTCGAACAtATCGTTTAT
SARS_coronavirus_civet007 ATGGATGAATTCATACAGCGATATAAGCTcGAGGGCTATGCCTTCGAACACATCGTTTAT
SARS_coronavirus_GZ50 ATGGATGAATTCATACAGCGATATAAGCTcGAGGGCTATGCCTTCGAACACATCGTTTAT
SARS_coronavirus_Taiwan_TC1 ATGGATGAATTCATACAGCGATATAAGCTcGAGGGCTATGCCTTCGAACACATCGTTTAT
Bat_coronavirus_(BtCoV/273/2005) ATGGATGAATTCATACAGCGATAcAAGCTAGAaGGCTATGCCTTCGAgCAtATCGTTTAT
BtRf-BetaCoV/HeB2013 ATGGATGAATTCATACAGCGATAcAAGCTAGAGGGCTATGCCTTCGAgCAtATCGTTTAT
SARS_CORONAVIRUS --AaAcTTCAa-------------------CTctATTT----------------------
Severe_acute_respiratory_syndrom GGAGATTTtAGTCATaGtCAgtTAGGtGGTtTaCATcTAcTGATtGGaCTAGCtAAaCGt
SARS_coronavirus_civet007 GGAGATTTCAGTCATGGACAACTtGGCGGTCTTCATTTAATGATAGGCtTAGCCAAGCGC
SARS_coronavirus_GZ50 GGAGATTTCAGTCATGGACAACTtGGCGGTCTTCATTTAATGATAGGCtTAGCCAAGCGC
SARS_coronavirus_Taiwan_TC1 GGAGATTTCAGTCATGGACAACTtGGCGGTCTTCATTTAATGATAGGCtTAGCCAAGCGC
Bat_coronavirus_(BtCoV/273/2005) GGAGATTTCAGTCATGGACAACTAGGCGGaCTTCATcTAATGATAGGtCTtGCCAAGaGa
BtRf-BetaCoV/HeB2013 GGAGATTTCAGTCATGGACAACTAGGCGGaCTTCATTTAATGATAGGtCTtGCCAAGaaa
SARS_CORONAVIRUS --------------------gTTgGAG-----------TgTtaACAatgCAGTGgcAAg-
Severe_acute_respiratory_syndrom TttaAgGAaTCACCttTTgAATTAGAaGATTTTATtCCTATGGACAGtACAGTtAAAAAc
SARS_coronavirus_civet007 TCACAAGATTCACCACTTAAATTAGAGGATTTTATCCCTATGGACAGCACAGTGAAAAAT
SARS_coronavirus_GZ50 TCACAAGATTCACCACTTAAATTAGAGGATTTTATCCCTATGGACAGCACAGTGAAAAAT
SARS_coronavirus_Taiwan_TC1 TCACAAGATTCACCACTTAAATTAGAGGATTTTATCCCTATGGACAGCACAGTGAAAAAT
Bat_coronavirus_(BtCoV/273/2005) TCACAAGAcTCACCgtTaAAATTAGAGGATTTTATCCCTATGGACAGCACAGTGAAgAAT
BtRf-BetaCoV/HeB2013 TCACAAGAcTCACCgtTaAAATTAGAGGATTTTATCCCTATGGAtAGtACgGTGAAgAAT
SARS_CORONAVIRUS ------ATAACAGtT------ACAGGTTCATCtAAgTGTGTGTGTTCTGTTATTGATtTa
Severe_acute_respiratory_syndrom TAtTTCATAACAGATGCGCAAACAGGTTCATCtAAgTGTGTGTGTTCTGTTATTGATtTa
SARS_coronavirus_civet007 TACTTCATAACAGATGCGCAAACAGGTTCATCAAAATGTGTGTGTTCTGTgATTGATCTT
SARS_coronavirus_GZ50 TACTTCATAACAGATGCGCAAACAGGTTCATCAAAATGTGTGTGTTCTGTgATTGATCTT
SARS_coronavirus_Taiwan_TC1 TACTTCATAACAGATGCGCAAACAGGTTCATCAAAATGTGTGTGTTCTGTgATTGATCTT
Bat_coronavirus_(BtCoV/273/2005) TAtTTCATAACAGATGCtCAAACAGGTTCgTCAAAATGTGTcTGcTCTGTTATTGATCTT
BtRf-BetaCoV/HeB2013 TAtTTCATAACAGATGCtCAAACAGGTTCgTCAAAATGTGTcTGcTCTGTTATTGATCTT
SARS_CORONAVIRUS TTACTTGATGAtTTTGTtGAAATAATAAAaTCcCAAGATTTaTCtGTAGTTTCtAAgGTt
Severe_acute_respiratory_syndrom TTACTTGATGAtTTTGTtGAAATAATAAAaTCcCAAGATTTaTCtGTAGTTTCtAAgGTt
SARS_coronavirus_civet007 TTACTTGATGACTTTGTCGAgATAATAAAGTCACAAGATTTGTCAGTgaTTTCAAAAGTG
SARS_coronavirus_GZ50 TTACTTGATGACTTTGTCGAgATAATAAAGTCACAAGATTTGTCAGTgaTTTCAAAAGTG
SARS_coronavirus_Taiwan_TC1 TTACTTGATGACTTTGTCGAgATAATAAAGTCACAAGATTTGTCAGTgaTTTCAAAAGTG
Bat_coronavirus_(BtCoV/273/2005) TTACTTGATGACTTTGTaGAAATAATAAAGTCACAAGATcTtTCAGTAGTTTCAAAAGTG
BtRf-BetaCoV/HeB2013 TTACTTGATGACTTTGTaGAAATAATAAAGTCACAAGATcTtTCAGTAGTTTCAAAAGTG
SARS_CORONAVIRUS GTCAAAGTgACtATTGACTATaCaGAAATTTCATTTATGCTTTGGTGTAAAGATGGcCAT
Severe_acute_respiratory_syndrom GTCAAAGTgACtATTGACTATaCaGAAATTTCATTTATGCTTTGGTGTAAAGATGGcCAT
SARS_coronavirus_civet007 GTCAAgGTtACAATTGACTATGCTGAAATTTCATTcATGCTTTGGTGTAAgGATGGACAT
SARS_coronavirus_GZ50 GTCAAgGTtACAATTGACTATGCTGAAATTTCATTcATGCTTTGGTGTAAgGATGGACAT
SARS_coronavirus_Taiwan_TC1 GTCAAgGTtACAATTGACTATGCTGAAATTTCATTcATGCTTTGGTGTAAgGATGGACAT
Bat_coronavirus_(BtCoV/273/2005) GTCAAAGTcACAATaGACTATGCTGAAATaTCATTTATGCTTTGGTGTAAAGATGGACAT
BtRf-BetaCoV/HeB2013 GTCAAAGTcACAATaGACTATGCTGAAATaTCATTTATGCTTTGGTGTAAAGATGGACAT
SARS_CORONAVIRUS GTaGAAACaTTTTACCCAAAATTACAAtCtAGTCAAGCGTGGCAACCGGGTGTTGCtATG
Severe_acute_respiratory_syndrom GTaGAAACaTTTTACCCAAAATTACAAtCtAGTCAAGCGTGGCAACCGGGTGTTGCtATG
SARS_coronavirus_civet007 GTTGAAACCTTcTACCCAAAAcTACAAGCAAGTCAAGCGTGGCAACCaGGTGTTGCGATG
SARS_coronavirus_GZ50 GTTGAAACCTTcTACCCAAAAcTACAAGCAAGTCAAGCGTGGCAACCaGGTGTTGCGATG
SARS_coronavirus_Taiwan_TC1 GTTGAAACCTTcTACCCAAAAcTACAAGCAAGTCAAGCGTGGCAACCaGGTGTTGCGATG
Bat_coronavirus_(BtCoV/273/2005) GTTGAAACCTTTTACCCAAAATTACAAGCgAGTCAgGCaTGGCAACCGGGcGTTGCaATG
BtRf-BetaCoV/HeB2013 GTTGAAACCTTTTACCCAAAATTACAAGCgAGTCAgGCaTGGCAACCGGGcGTTGCaATG
SARS_CORONAVIRUS CCTAAtcTtTACAAaATGCAAAGAATGCTatTaGAAAAGTGTGACCTTCAaAATTATGGT
Severe_acute_respiratory_syndrom CCTAAtcTtTACAAaATGCAAAGAATGCTatTaGAAAAGTGTGACCTTCAaAATTATGGT
SARS_coronavirus_civet007 CCTAACTTGTACAAGATGCAAAGAATGCTTCTTGAAAAGTGTGACCTTCAGAATTATGGT
SARS_coronavirus_GZ50 CCTAACTTGTACAAGATGCAAAGAATGCTTCTTGAAAAGTGTGACCTTCAGAATTATGGT
SARS_coronavirus_Taiwan_TC1 CCTAACTTGTACAAGATGCAAAGAATGCTTCTTGAAAAGTGTGACCTTCAGAATTATGGT
Bat_coronavirus_(BtCoV/273/2005) CCcAACTTGTAtAAGATGCAAAGAATGCTTCTTGAAAAaTGTGACCTTCAGAATTATGGT
BtRf-BetaCoV/HeB2013 CCcAACTTGTAtAAGATGCAAAGAATGCTTCTTGAAAAaTGTGACCTTCAGAATTATGGT
SARS_CORONAVIRUS GAtAgTGCaacatTACCtAAAGGcATAATGATGAATGTCGCAAAATATACTCAACTGTGT
Severe_acute_respiratory_syndrom GAtAgTGCaacatTACCtAAAGGcATAATGATGAATGTCGCAAAATATACTCAACTGTGT
SARS_coronavirus_civet007 GAAAATGCTGTTATACCAAAAGGAATAATGATGAATGTCGCAAAgTATACTCAACTGTGT
SARS_coronavirus_GZ50 GAAAATGCTGTTATACCAAAAGGAATAATGATGAATGTCGCAAAgTATACTCAACTGTGT
SARS_coronavirus_Taiwan_TC1 GAAAATGCTGTTATACCAAAAGGAATAATGATGAATGTCGCAAAgTATACTCAACTGTGT
Bat_coronavirus_(BtCoV/273/2005) GAAAAcGCTGTTATACCAAAAGGAATAATGATGAATGTCGCAAAATATACcCAACTGTGT
BtRf-BetaCoV/HeB2013 GAAAAcGCTGTTATACCAAAAGGAATAATGATGAATGTCGCAAAATATACcCAACTGTGT
SARS_CORONAVIRUS CAATAtTTAAAcACAtTaACATTAGCTGTACCCTAtAAtATGAGAGTTATACAtTTTGGT
Severe_acute_respiratory_syndrom CAATAtTTAAAcACAtTaACATTAGCTGTACCCTAtAAtATGAGAGTTATACAtTTTGGT
SARS_coronavirus_civet007 CAATACTTAAATACACTTACtTTAGCTGTACCCTACAACATGAGAGTTATtCACTTTGGT
SARS_coronavirus_GZ50 CAATACTTAAATACACTTACtTTAGCTGTACCCTACAACATGAGAGTTATtCACTTTGGT
SARS_coronavirus_Taiwan_TC1 CAATACTTAAATACACTTACtTTAGCTGTACCCTACAACATGAGAGTTATtCACTTTGGT
Bat_coronavirus_(BtCoV/273/2005) CAATACTTAAAcACACTTACATTAGCTGTgCCtTACAACATGAGAGTcATACACTTTGGc
BtRf-BetaCoV/HeB2013 CAATACTTAAATACACTTACATTAGCTGTgCCtTACAACATGAGAGTcATACACTTTGGc
SARS_CORONAVIRUS GCTGGtTCTGATAAAGGAGTTGCACCAGGTACAGCTGTttTaAGACAGTGGTTGCCtACg
Severe_acute_respiratory_syndrom GCTGGtTCTGATAAAGGAGTTGCACCAGGTACAGCTGTttTaAGACAGTGGTTGCCtACg
SARS_coronavirus_civet007 GCTGGCTCTGATAAAGGAGTTGCACCAGGTACAGCTGTaCTCAGACAaTGGTTGCCAACT
SARS_coronavirus_GZ50 GCTGGCTCTGATAAAGGAGTTGCACCAGGTACAGCTGTGCTCAGACAaTGGTTGCCAACT
SARS_coronavirus_Taiwan_TC1 GCTGGCTCTGATAAAGGAGTTGCACCAGGTACAGCTGTGCTCAGACAaTGGTTGCCAACT
Bat_coronavirus_(BtCoV/273/2005) GCTGGCTCTGAcAAAGGAGTgGCgCCtGGTACAGCTGTGCTCAGACAGTGGTTGCCAAtT
BtRf-BetaCoV/HeB2013 GCTGGCTCTGAcAAAGGAGTgGCgCCtGGTACAGCTGTGCTCAGACAGTGGTTGCCAAtT
SARS_CORONAVIRUS GGtACgCTgCTTGTCGATTCAGATCTTAATGACTTTGTCTCTGAtGCAGATTCaACTTTg
Severe_acute_respiratory_syndrom GGtACgCTgCTTGTCGATTCAGATCTTAATGACTTTGTCTCTGAtGCAGATTCaACTTTg
SARS_coronavirus_civet007 GGCACACTACTTGTCGATTCAGATCTTAATGACTTcGTCTCcGACGCAGATTCTACTTTA
SARS_coronavirus_GZ50 GGCACACTACTTGTCGATTCAGATCTTAATGACTTcGTCTCcGACGCAGATTCTACTTTA
SARS_coronavirus_Taiwan_TC1 GGCACACTACTTGTCGATTCAGATCTTAATGACTTcGTCTCcGACGCAGATTCTACTTTA
Bat_coronavirus_(BtCoV/273/2005) GGCACACTACTTGTCGATTCtGAcCTTAATGAtTTTGTCTCTGACGCtGATTCTACaTTA
BtRf-BetaCoV/HeB2013 GGCACACTACTTGTCGATTCtGAcCTTAATGAtTTTGTCTCTGACGCtGATTCTACaTTA
SARS_CORONAVIRUS ATTGGtGAtTGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGtGATATG
Severe_acute_respiratory_syndrom ATTGGtGAtTGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGtGATATG
SARS_coronavirus_civet007 ATTGGAGACTGTGCAACaGTACATACgGCTAATAAATGGGAcCTtATTATTAGCGATATG
SARS_coronavirus_GZ50 ATTGGAGACTGTGCAACaGTACATACgGCTAATAAATGGGAcCTtATTATTAGCGATATG
SARS_coronavirus_Taiwan_TC1 ATTGGAGACTGTGCAACaGTACATACgGCTAATAAATGGGAcCTtATTATTAGCGATATG
Bat_coronavirus_(BtCoV/273/2005) ATTGGAGACTGTGCtACTGTACATACAGCTAATAAATGGGATCTCATTgTTAGCGATATG
BtRf-BetaCoV/HeB2013 ATTGGAGACTGTGCtACTGTACATACAGCTAAcAAATGGGATCTCATTgTTAGCGATATG
SARS_CORONAVIRUS TAcGACCCTAAGACTAAAaATGTtACAAAAGAaAATGACTCTAAAGAgGGtTTTTTCACT
Severe_acute_respiratory_syndrom TAcGACCCTAAGACTAAAaATGTtACAAAAGAaAATGACTCTAAAGAgGGtTTTTTCACT
SARS_coronavirus_civet007 TATGACCCTAgGACcAAACATGTGACAAAAGAGAATGACTCTAAAGAAGGGTTTTTCACT
SARS_coronavirus_GZ50 TATGACCCTAgGACcAAACATGTGACAAAAGAGAATGACTCTAAAGAAGGGTTTTTCACT
SARS_coronavirus_Taiwan_TC1 TATGACCCTAgGACcAAACATGTGACAAAAGAGAATGACTCTAAAGAAGGGTTTTTCACT
Bat_coronavirus_(BtCoV/273/2005) TATGACCCTAAaACTAAgCATGTGACAgAgGAGAATGACTCaAAAGAAGGGTTTTTCACc
BtRf-BetaCoV/HeB2013 TATGACCCTAAaACTAAACATGTGACAgAgGAGAATGACTCaAAAGAAGGGTTTTTCACc
SARS_CORONAVIRUS TAcaTtTGTGGgT----------------------------TTtTAcGGtctTAAtGAcA
Severe_acute_respiratory_syndrom TAcaTtTGTGGgTTTATAcAACAAAAgCTAGCtCTtGGAGGTTCcgTGGCTaTAAAGATA
SARS_coronavirus_civet007 TATCTGTGTGGATTTATAAAgCAAAAACTAGCCCTGGGtGGTTCTATaGCTGTAAAGATA
SARS_coronavirus_GZ50 TATCTGTGTGGATTTATAAAgCAAAAACTAGCCCTGGGtGGTTCTATaGCTGTAAAGATA
SARS_coronavirus_Taiwan_TC1 TATCTGTGTGGATTTATAAAgCAAAAACTAGCCCTGGGtGGTTCTATaGCTGTAAAGATA
Bat_coronavirus_(BtCoV/273/2005) TATCTGTGTGGATTTATAAAACAAAAACTAGCCCTGGGAGGTTCcgTGGCTGTAAAGATA
BtRf-BetaCoV/HeB2013 TATCTGTGTGGATTTATAAAACAAAAACTAGCCCTGGGAGGTTCcgTGGCTGTAAAGATA
SARS_CORONAVIRUS A-----CcTTCTTGaAATaCT---------------------------------------
Severe_acute_respiratory_syndrom ACAGAaCATTCTTGGAATGCTGAtCTTTAtAAGCTcATGGGACAcTTCgCATGGTGGACA
SARS_coronavirus_civet007 ACAGAGCATTCTTGGAATGCTGACCTTTACAAGCTTATGGGcCATTTCTCATGGTGGACA
SARS_coronavirus_GZ50 ACAGAGCATTCTTGGAATGCTGACCTTTACAAGCTTATGGGcCATTTCTCATGGTGGACA
SARS_coronavirus_Taiwan_TC1 ACAGAGCATTCTTGGAATGCTGACCTTTACAAGCTTATGGGcCATTTCTCATGGTGGACA
Bat_coronavirus_(BtCoV/273/2005) ACAGAGCATTCTTGGAATGCTGAtCTcTACAAGCTTATGGGAtATTTCTCATGGTGGACA
BtRf-BetaCoV/HeB2013 ACAGAGCATTCTTGGAATGCTGAtCTcTACAAGCTTATGGGAtATTTCTCATGGTGGACA
SARS_CORONAVIRUS -------ccAaAAAgagAAAgtCAaCATCAat-------------ATTGttGgTgACTtT
Severe_acute_respiratory_syndrom GCcTTTGTTACtAATGTgAATGCgTCATCATCtGAAGCATTTTTAATTGGAtgTAAtTAT
SARS_coronavirus_civet007 GCTTTTGTTACAAATGTAAATGCATCATCATCGGAAGCATTTTTAATTGGgGCTAACTAT
SARS_coronavirus_GZ50 GCTTTTGTTACAAATGTAAATGCATCATCATCGGAAGCATTTTTAATTGGgGCTAACTAT
SARS_coronavirus_Taiwan_TC1 GCTTTTGTTACAAATGTAAATGCATCATCATCGGAAGCATTTTTAATTGGgGCTAACTAT
Bat_coronavirus_(BtCoV/273/2005) GCTTTTGTcACAAATGTcAATGCgTCATCcTCtGAgGCATTTTTgATTGGAGtTAAtTAc
BtRf-BetaCoV/HeB2013 GCTTTTGTcACAAATGTcAATGCgTCATCcTCtGAgGCATTTTTAATTGGAGtTAAtTAc
SARS_CORONAVIRUS ------AAaCttAAtGAAgAgATcG---------CCAT-tATttTggCatCtTTTTCTG-
Severe_acute_respiratory_syndrom CTTGGCAAaCCacgcGAACAAATaGATGGtTATgtCATGCATGCaAAtTACATaTTtTGG
SARS_coronavirus_civet007 CTTGGCAAGCtGAAGGAACAAATTGATGGCTATACCATGCATGCTAACTACATTTTCTGG
SARS_coronavirus_GZ50 CTTGGCAAGCCGAAGGAACAAATTGATGGCTATACCATGCATGCTAACTACATTTTCTGG
SARS_coronavirus_Taiwan_TC1 CTTGGCAAGCCGAAGGAACAAATTGATGGCTATACCATGCATGCTAACTACATTTTCTGG
Bat_coronavirus_(BtCoV/273/2005) CTTGGtAAGCCGAAaGAgCAAATTGATGGCTATACCATGCATGCTAACTACgTcTTCTGG
BtRf-BetaCoV/HeB2013 CTTGGtAAGCCGAAaGAgCAAATTGATGGCTATACCATGCATGCTAACTACgTcTTCTGG
SARS_CORONAVIRUS ------------CtTccaCAagTGctTTtgT-----------------------------
Severe_acute_respiratory_syndrom AGGAAtACAAATCCaATtCAGTTGTCTTCCTATTCttTATTTGACATGAGtAAATTTCCc
SARS_coronavirus_civet007 AGGAACACAAATCCTATCCAGTTGTCTTCCTATTCACTcTTTGACATGAGCAAATTTCCT
SARS_coronavirus_GZ50 AGGAACACAAATCCTATCCAGTTGTCTTCCTATTCACTcTTTGACATGAGCAAATTTCCT
SARS_coronavirus_Taiwan_TC1 AGGAACACAAATCCTATCCAGTTGTCTTCCTATTCACTcTTTGACATGAGCAAATTTCCT
Bat_coronavirus_(BtCoV/273/2005) AGGAAtACAAATCCTATtCAaTTGTCTTCtTATTCAtTATTTGACATGAGCAAATTcCCT
BtRf-BetaCoV/HeB2013 AGGAAtACAAATCCTATtCAaTTGTCTTCtTATTCAtTATTTGACATGAGCAAATTcCCT
SARS_CORONAVIRUS -----------GGaAACTG-TGaAAgGTtT-----GGAttAT-AAAgCAtTcAaAcaAaT
Severe_acute_respiratory_syndrom CTTAAATTAAGGGGtACTGCTGTtATGTCTtTAAAaGAaggTCAAATCAATGATATGATT
SARS_coronavirus_civet007 CTTAAATTAAGaGGAACTGCTGTAATGTCTCTtAAGGAGAATCAAATCAATGATATGATT
SARS_coronavirus_GZ50 CTTAAATTAAGaGGAACTGCTGTAATGTCTCTtAAGGAGAATCAAATCAATGATATGATT
SARS_coronavirus_Taiwan_TC1 CTTAAATTAAGaGGAACTGCTGTAATGTCTCTtAAGGAGAATCAAATCAATGATATGATT
Bat_coronavirus_(BtCoV/273/2005) CTcAAATTAAGGGGgACTGCTGTtATGTCTtTAAAaGAGAATCAAATCAATGAcATGATT
BtRf-BetaCoV/HeB2013 CTcAAATTAAGGGGgACTGCTGTtATGTCTtTAAAaGAGAATCAAATCAATGAcATGATT
SARS_CORONAVIRUS TgTTgaaTcCTGtGgtAAtttTAaAgTTAcaAaagGAaAAgctAAaAaAGgTGcc-----
Severe_acute_respiratory_syndrom TtaTCTCTTCTt-agtAAAGGTAGACTTATaATTAGAGAAAACAACAGAGTTGTtaTTTC
SARS_coronavirus_civet007 TATTCTCTTCTG-GAAAAAGGTAGgCTTATCATTAGAGAAAACAACAGAGTTGTGGTTTC
SARS_coronavirus_GZ50 TATTCTCTTCTG-GAAAAAGGTAGgCTTATCATTAGAGAAAACAACAGAGTTGTGGTTTC
SARS_coronavirus_Taiwan_TC1 TATTCTCTTCTG-GAAAAAGGTAGgCTTATCATTAGAGAAAACAACAGAGTTGTGGTTTC
Bat_coronavirus_(BtCoV/273/2005) TATTCcCTgtTG-GAAAAgGGTAGACTTATCATTAGAGAAAACAACAcAGTTGTaGTcTC
BtRf-BetaCoV/HeB2013 TATTCcCTgtTG-GAAAAgGGTAGACTTATCATTAGAGAAAACAACAcAGTTGTaGTcTC
SARS_CORONAVIRUS ---TGgaATatTgGTgAACAg--AAAtcAAtAcTGagTccTcT----TTATgcaTT----
Severe_acute_respiratory_syndrom tAGTGATgTTCTTGTTAACAACTAAACGAACAATGTTTgTTTT----TctTgTtTTAtTg
SARS_coronavirus_civet007 AAGTGATATTCTTGTTAACAACTAAACGAAC-ATGTTTATTTTCTTATTATTTCTTACTC
SARS_coronavirus_GZ50 AAGTGATATTCTTGTTAACAACTAAACGAAC-ATGTTTATTTTCTTATTATTTCTTACTC
SARS_coronavirus_Taiwan_TC1 AAGTGATATTCTTGTTAACAACTAAACGAAC-ATGTTTATTTTCTTATTATTTCTTACTC
Bat_coronavirus_(BtCoV/273/2005) AAGTGATgTTCTTGTTAAtcAtTAAACGAAC-ATGaaaATT------TTAaTTtTTgCTt
BtRf-BetaCoV/HeB2013 AAGTGATgTTCTTGTTAAtcAtTAAACGAAC-ATGaaaATT------TTAaTTtTTgCTt
SARS_CORONAVIRUS --------------------------TGCAtCA---------GAgGcTGcTCgtGtT---
Severe_acute_respiratory_syndrom cCACTAGT--------CtCTAgtCAGTGtgttA-------------ATcTTacAaCc---
SARS_coronavirus_civet007 TCACTAGTGGTAGTGACCtTgACCgGTGCACCA----CTTTTGATGATGTTCAAGCT---
SARS_coronavirus_GZ50 TCACTAGTGGTAGTGACCtTgACCgGTGCACCA----CTTTTGATGATGTTCAAGCT---
SARS_coronavirus_Taiwan_TC1 TCACTAGTGGTAGTGACCtTgACCgGTGCACCA----CTTTTGATGATGTTCAAGCT---
Bat_coronavirus_(BtCoV/273/2005) TCc-------TAGTtACCCTAgttAaaGCACaAGAAGgTTgTGgcG-TGaTCAAcCTCAg
BtRf-BetaCoV/HeB2013 TCc-------TAGTtACCCTAgttAaaGCACaAGAAGgTTgTGgcG-TGaTCAAcCTCAa
SARS_CORONAVIRUS ------------gTACgaTCAAttTtC---------------------------------
Severe_acute_respiratory_syndrom ---AgAACtcAATTACcCcCtgCATACactaaTTCtTtcAcacGtGGtGTTTAtTAcCCT
SARS_coronavirus_civet007 -------CCTAATTACACTCAACATAC-----TTCATCtAtGAGGGGGGTTTACTATCCT
SARS_coronavirus_GZ50 -------CCTAATTACACTCAACATAC-----TTCATCtAtGAGGGGGGTTTACTATCCT
SARS_coronavirus_Taiwan_TC1 -------CCTAATTACACTCAACATAC-----TTCATCtAtGAGGGGGGTTTACTATCCT
Bat_coronavirus_(BtCoV/273/2005) GACACAACCTAAaTtaACaCAAgtctC-----cTCcTCgcgtAGaGGtGTTTAtTATaaT
BtRf-BetaCoV/HeB2013 GACACAACCTAtaTtaACaCAAgtctC-----cTCcTCgcgtAGaGGtGTTTAtTATaaT
SARS_CORONAVIRUS ---------------TCccgCACTCTTgAaactgCTCAaaA-------------TTCTgT
Severe_acute_respiratory_syndrom GAcaAAgTTTTCAGATCctcagtTtTaCATTcAACTCAGGAcTTgTTCtTACCtTTCTtT
SARS_coronavirus_civet007 GATGAAATTTTtAGATCAGACACTCTTtATTTAACTCAGGATTTATTtCTtCCATTtTAT
SARS_coronavirus_GZ50 GATGAAATTTTtAGATtAGACACTCTTtATTTAACTCAGGATTTATTtCTtCCATTtTAT
SARS_coronavirus_Taiwan_TC1 GATGAAATTTTtAGATCAGACACTCTTtATTTAACTCAGGATTTATTtCTtCCATTtTAT
Bat_coronavirus_(BtCoV/273/2005) GATGAtATaTTCcGtTCtGAtgtTtTaCATcTcACgCAGGATTatTTCtTACCATTCcAT
BtRf-BetaCoV/HeB2013 GATGAtATaTTCcGtTCtGAtgtTtTaCATcTcACgCAGGATTatTTCtTACCATTCcAT
SARS_CORONAVIRUS gCgtgTtTTACAGaaggCCgc------------------------------------TaT
Severe_acute_respiratory_syndrom TCcAATGTTACttGGTTCCATgCTATacATgTctctgggaccAAtggTacTaAgAgGTTT
SARS_coronavirus_civet007 TCTAATGTTACAGGGTTtCATACTATTAA---------------------TCATACGTTT
SARS_coronavirus_GZ50 TCTAATGTTACAGGGTTtCATACTATTAA---------------------TCATACGTTT
SARS_coronavirus_Taiwan_TC1 TCTAATGTTACAGGGTTtCATACTATTAA---------------------TCATACGTTT
Bat_coronavirus_(BtCoV/273/2005) TCTAAccTaACAcaGTaCttTtCTcTTAATATTGAGTCAGATAAAATTGTTtA---tTTT
BtRf-BetaCoV/HeB2013 TCTAAccTaACAcaGTaCttTtCTcTTAATATTGAGTCAGATAAAATTGTTtA---tTTT
SARS_CORONAVIRUS aACAAtaCTa--------------GATGGaATTTcacagtaTTcaCTGagACtcAttgAT
Severe_acute_respiratory_syndrom GAtAACCCTGTCcTACCATTTAAtGATGGTgTTTA-----TTTTGCTtCCACtGAGAAgT
SARS_coronavirus_civet007 GACAACCCTGTCATACCtTTTAAGGATGGTATTTA-----TTTTGCTGCCACAGAGAAAT
SARS_coronavirus_GZ50 GACAACCCTGTCATACCtTTTAAGGATGGTATTTA-----TTTTGCTGCCACAGAGAAAT
SARS_coronavirus_Taiwan_TC1 GgCAACCCTGTCATACCtTTTAAGGATGGTATTTA-----TTTTGCTGCCACAGAGAAAT
Bat_coronavirus_(BtCoV/273/2005) GACAAtCCcaTatTgaaATTTggtGAcGGTgTTTA-----cTTcGCaGCCACcGAaAAgT
BtRf-BetaCoV/HeB2013 GACAAtCCcaTatTgaaATTTggtGAcGGTgTTTA-----cTTcGCaGCCACcGAaAAgT
SARS_CORONAVIRUS gctATGaTGTtCacatCTGa---TTTGG--CTACTA-------------ACAaTC--Tag
Severe_acute_respiratory_syndrom CtAAcaTaaTAaGAGGCTGGaTTTTTGGTaCTACTtTagAttcgAAGACcCAGTCccTac
SARS_coronavirus_civet007 CAAATGTTGTcCGtGGtTGGGTTTTTGGTTCTACcATGAACAACAAGtCACAGTCgGTGA
SARS_coronavirus_GZ50 CAAATGTTGTcCGtGGtTGGGTTTTTGGTTCTACcATGAACAACAAGtCACAGTCgGTGA
SARS_coronavirus_Taiwan_TC1 CAAATGTTGTcCGtGGtTGGGTTTTTGGTTCTACcATGAACAACAAGtCACAGTCgGTGA
Bat_coronavirus_(BtCoV/273/2005) CtAATGTaaTAaGAGGCTGGGTgTTTGGTTCcACTtTtgACAACAccACtCAGTCtGctA
BtRf-BetaCoV/HeB2013 CtAATGTaaTAaGAGGCTGGGTgTTTGGTTCcACTtTtgACAACAccACtCAGTCtGctA
SARS_CORONAVIRUS TTgTaATggcCtAcatTACaggTGgTGTTgTtCag----tTgACTTcGcAgTGgcTAACt
Severe_acute_respiratory_syndrom TTATTgTTAAtAAcgCTACTAATGTTGTTATtaaAGtcTGTgAaTTTcAATTtTGTAAt-
SARS_coronavirus_civet007 TTATTATTAACAATTCTACTAATGTTGTTATACGAGCATGTAACTTTGAATTGTGTgAC-
SARS_coronavirus_GZ50 TTATTATTAACAATTCTACTAATGTTGTTATACGAGCATGTAACTTTGAATTGTGTgAC-
SARS_coronavirus_Taiwan_TC1 TTATTATTAACAATTCTACTAATGTTGTTATACGAGCATGTAACTTTGAATTGTGTgAC-
Bat_coronavirus_(BtCoV/273/2005) TTATagTcAAtAATTCcACacAcaTTaTTATACGtGtgTGctAtTTTaAccTcTGTAAa-
BtRf-BetaCoV/HeB2013 TTATagTcAAtAATTCcACacAcaTTaTTATACGtGtgTGctAtTTTaAccTcTGTAAa-
SARS_CORONAVIRUS AACatCTTtggcaCTGTTTaT----gAA---------------------aaACtCAaACc
Severe_acute_respiratory_syndrom gAtCCaTTtTTgGgTGTTTaT----tAcCaCAaaaacaacaaaagtTGGaTggAaAGtgA
SARS_coronavirus_civet007 AACCCtTTCTTTGtTGTTTCT----AAACCCA--------------TGGGTACACAGACA
SARS_coronavirus_GZ50 AACCCtTTCTTTGCTGTTTCT----AAACCCA--------------TGGGTACACAGACA
SARS_coronavirus_Taiwan_TC1 AACCCtTTCTTTGCTGTTTCT----AAACCCA--------------TGGGTACACAGACA
Bat_coronavirus_(BtCoV/273/2005) gACCCCaTgTaTaCTGTgTCTGCTGgcACCCA--------------aaaGTcCtCAtg--
BtRf-BetaCoV/HeB2013 gAtCCCaTgTaTaCcGTgTCTGCTGgcACCCA--------------aGtGTcCtCAtg--
SARS_CORONAVIRUS CgTcC--------------------TTgATTG----------------------------
Severe_acute_respiratory_syndrom gtTcagAgttTATTC--TAgTGCgaaTAATTGCACTTTtGAaTAtgTcTCTcAgcCtTTT
SARS_coronavirus_civet007 CATACTATGATATTCGATAATGCATTTAATTGCACTTTCGAGTACATATCTGATGCCTTT
SARS_coronavirus_GZ50 CATACTATGATATTCGATAATGCATTTAATTGCACTTTCGAGTACATATCTGATGCCTTT
SARS_coronavirus_Taiwan_TC1 CATACTATGATATTCGATAATGCATTTAATTGCACTTTCGAGTACATATCTGATGCCTTT
Bat_coronavirus_(BtCoV/273/2005) --------GgTtTatcAgAgTGCtTTcAATTGCACaTaCGAtagagTggaaaAaagCTTc
BtRf-BetaCoV/HeB2013 --------GgTtTaCcAgAgTGCtTTcAATTGCACaTaCGAtagagTggaaaAaagCTTc
SARS_CORONAVIRUS --GCTTGA------AGAgAAG---------------------------------TTTAAg
Severe_acute_respiratory_syndrom CttaTgGACcTTgaAGgAAAacagGGTAATTTcAAAaAtcTtaGgGAaTTTGTGTTTAAg
SARS_coronavirus_civet007 tCGCTTGAtGTTTCAGAAAAGTCAGGTAATTTTAAACACTTACGAGAGTTTGTGTTTAAA
SARS_coronavirus_GZ50 tCGCTTGAtGTTTCAGAAAAGTCAGGTAATTTTAAACACTTACGAGAGTTTGTGTTTAAA
SARS_coronavirus_Taiwan_TC1 tCGCTTGAtGTTTCAGAAAAGTCAGGTAATTTTAAACACTTACGAGAGTTTGTGTTTAAA
Bat_coronavirus_(BtCoV/273/2005) CaaCTaGACacaTCccctAAGaCtGGTAATTTTActgACTTACGtGAGTTTGTcTTTAAA
BtRf-BetaCoV/HeB2013 CaaCTaGACacaTCccctAAGaCtGGTAATTTTActgACTTACGtGAGTTTGTcTTTAAA
SARS_CORONAVIRUS gAaggTGtaGaGTTTCTtAgaG------AcGGtTgggAAatTgTTAA-----------AT
Severe_acute_respiratory_syndrom AATAtTGATGGtTaTtTtAAaaTaTATtctaagcAcAcgCCTATTAATtTAGTgCGTGAT
SARS_coronavirus_civet007 AATAAaGATGGGTTTCTCtATGTTTATAAGGGCTATcAACCTATagATgTAGTTCGTGAT
SARS_coronavirus_GZ50 AATAAaGATGGGTTTCTCtATGTTTATAAGGGCTATcAACCTATagATgTAGTTCGTGAT
SARS_coronavirus_Taiwan_TC1 AATAAaGATGGGTTTCTCtATGTTTATAAGGGCTATcAACCTATagATgTAGTTCGTGAT
Bat_coronavirus_(BtCoV/273/2005) AATcgTGATGGGTTTtTCAcTGcTTAccAGactTATAccCCagTTAAccTccTTaGaGgT
BtRf-BetaCoV/HeB2013 AATcgTGATGGGTTTtTCAcTGTTTAccAGactTATAccCCagTTAAccTccTTaGaGgT
SARS_CORONAVIRUS tTAtCTc------------------AACCTgTgCTTgtgAAATTGtCggTgG--------
Severe_acute_respiratory_syndrom CTcCCTcagGGTTTTtcggCTTTAgAACCatTggTa---gAtTTGCCaaTaGGTATTAAC
SARS_coronavirus_civet007 CTACCTTCTGGTTTTAACACTTTgAAACCTATTtTT---AAgTTGCCTCTTGGTATTAAg
SARS_coronavirus_GZ50 CTACCTTCTGGTTTTAACACTTTgAAACCTATTtTT---AAgTTGCCTCTTGGTATTAAC
SARS_coronavirus_Taiwan_TC1 CTACCTTCTGGTTTTAACACTTTgAAACCTATTtTT---AAgTTGCCTCTTGGTATTAAC
Bat_coronavirus_(BtCoV/273/2005) tTgCCaTCaGGTcTTtcagtTTTAAAACCcATTCTT---AAATTaCCatTTGGaATTAAt
BtRf-BetaCoV/HeB2013 tTgCCaTCaGGTcTTtcagtTTTAAAACCcATTCTT---AAATTaCCgtTTGGaATTAAt
SARS_CORONAVIRUS ---ACAAA--------------------------------TTgT--CACCTGtgCAAAgg
Severe_acute_respiratory_syndrom ATcACtAggTTTcaAaCttTaCTTgCtttacatagaAGttaTTTgaCtCCTGgTgAttCt
SARS_coronavirus_civet007 ATTACAAATTTTAGAGCCATTCTTAC----------AGCCTTTT--CACCTGCTCAAggC
SARS_coronavirus_GZ50 ATTACAAATTTTAGAGCCATTCTTAC----------AGCCTTTT--CACCTGCTCAAgaC
SARS_coronavirus_Taiwan_TC1 ATTACAAATTTTAGAGCCATTCTTAC----------AGCCTTTT--CACCTGCTCAAgaC
Bat_coronavirus_(BtCoV/273/2005) ATTACttcTTTTAGAGtggTTaTggC----------tatgTT--------cagTaAAACC
BtRf-BetaCoV/HeB2013 ATTACttcTTTTAGAGtggTTaTggC----------AatgTT--------cagTaAAACC
SARS_CORONAVIRUS AaaTtAAGGaGagtGT---------------------TcaGacATTaTAgGtCAACCACg
Severe_acute_respiratory_syndrom tCTTCAgGttGgACagCtGgtgCTGCAGCtTATTATGTgGGtTATcTTcAaCCtAggACt
SARS_coronavirus_civet007 ACTT---GGGGCACGTCAG---CTGCAGCCTATTtTGTtGGCTATTTaAAGCCAACtACA
SARS_coronavirus_GZ50 ACTT---GGGGCACGTCAG---CTGCAGCCTATTtTGTtGGCTATTTaAAGCCAACtACA
SARS_coronavirus_Taiwan_TC1 AtTT---GGGGCACGTCAG---CTGCAGCCTATTtTGTtGGCTATTTaAAGCCAACtACA
Bat_coronavirus_(BtCoV/273/2005) ACTTCtAattatgtGcCAGAAAgTGCtGCtTATTATGTgGGtaATcTTAAaCagtCCACc
BtRf-BetaCoV/HeB2013 ACTTCtAattatgtGcCAGAAAgTGCtGCtTATTATGTgGGCaATcTTAAaCagtCCACt
SARS_CORONAVIRUS TTc----------------------------cCgaAGgTG--------TGactTCcAtgc
Severe_acute_respiratory_syndrom TTTcTatTaAAaTATAATGAAAATGGAACcATtACAGATGCTGTaGAcTGTgCaCttgAc
SARS_coronavirus_civet007 TTTATGCTCAAgTATgATGAAAATGGtACAATCACAGATGCTGTTGATTGTTCTCAAAAT
SARS_coronavirus_GZ50 TTTATGCTCAAgTATgATGAAAATGGtACAATCACAGATGCTGTTGATTGTTCTCAAAAT
SARS_coronavirus_Taiwan_TC1 TTTATGCTCAAgTATgATGAAAATGGtACAATCACAGATGCTGTTGATTGTTCTCAAAAT
Bat_coronavirus_(BtCoV/273/2005) TTTATGCTCAgtTtTAATcAgAATGGAACtATtgtAGATGCTGTgGATTGTTCTCAAgAT
BtRf-BetaCoV/HeB2013 TTTATGCTCAgcTtTAATcAgAATGGAACtATtgtAGATGCTGTgGATTGTTCTCAAgAT
SARS_CORONAVIRUS CaAtgcGCgacAtTCcgAaGaACgcTgAAGcGCTggG-----GgCAAA------------
Severe_acute_respiratory_syndrom CCtCTctCAGAAacaAAgTGtACgtTgAAatcCTTcactgTaGAaAAAGGAATcTAtCAA
SARS_coronavirus_civet007 CCACTTGCtGAACTCAAATGCtCTGTTAAGAGCTTTGAGATTGACAAAGGAATTTACCAg
SARS_coronavirus_GZ50 CCACTTGCtGAACTCAAATGCtCTGTTAAGAGCTTTGAGATTGACAAAGGAATTTACCAg
SARS_coronavirus_Taiwan_TC1 CCACTTGCtGAACTCAAATGCtCTGTTAAGAGCTTTGAGATTGACAAAGGAATTTACCAg
Bat_coronavirus_(BtCoV/273/2005) CCACTTGCAGAgtTaAAgTGtACTacaAAaAGtTTTaAtgTctcCAAAGGcATTTAtCAA
BtRf-BetaCoV/HeB2013 CCACTTGCAGAgtTaAAgTGtACTacaAAaAGtTTTaAtgTctcCAAAGGcATTTAtCAA
SARS_CORONAVIRUS ----------------------------------TTGTGcaATTTgcggCcAATgTTtgt
Severe_acute_respiratory_syndrom ACtTCTAAcTTtAGAGTccaACCAaCAGaAtcTaTTGTtAGATTT---CCTAATATTACA
SARS_coronavirus_civet007 ACCTCTAATTTCAGgGTTgTtCCcTCAGGAGATGTTGTGAGATTc---CCTAATATTACA
SARS_coronavirus_GZ50 ACCTCTAATTTCAGgGTTgTtCCcTCAGGAGATGTTGTGAGATTc---CCTAATATTACA
SARS_coronavirus_Taiwan_TC1 ACCTCTAATTTCAGgGTTgTtCCcTCAGGAGATGTTGTGAGATTc---CCTAATATTACA
Bat_coronavirus_(BtCoV/273/2005) ACtTCcAATTTCAGAGTatcACCAgttactGAgGTTGTtAGATTT---CCaAATATTACA
BtRf-BetaCoV/HeB2013 ACtTCcAATTTCAGAGTatcACCAgttactGAgGTTGTtAGATTT---CCaAATATTACA
SARS_CORONAVIRUS AAtcaGTtcCtTgTctGAttaGTTccTggT-CCcCAAAATTTCCTTggGTtTgTtCt---
Severe_acute_respiratory_syndrom AACTTGTGcCCTTTTGGtGAaGTTTTTAAcGCCACcAgATTTgCaTCTGTtTATGCtTGG
SARS_coronavirus_civet007 AACTTGTGTCCTTTTGGAGAGGTTTTTAATGCtACtAAATTcCCTTCTGTCTATGCATGG
SARS_coronavirus_GZ50 AACTTGTGTCCTTTTGGAGAGGTTTTTAATGCtACtAAATTcCCTTCTGTCTATGCATGG
SARS_coronavirus_Taiwan_TC1 AACTTGTGTCCTTTTGGAGAGGTTTTTAATGCtACtAAATTcCCTTCTGTCTATGCATGG
Bat_coronavirus_(BtCoV/273/2005) AAtcTcTGTCCTTTTGacaAGGTTTTTAATGCCACAcgcTTTCCTagTGTCTATGCcTGG
BtRf-BetaCoV/HeB2013 AAtcTcTGTCCTTTTGacaAGGTTTTTAATGCCACAcgcTTTCCTagTGTCTATGCcTGG
SARS_CORONAVIRUS ----GgAccAcgtcTgCcgAaagcTTGTGTTaC-----AtTgTaTGCTtT----------
Severe_acute_respiratory_syndrom aAcAGgAAgAgAATcagcAA----cTGTGTTGCTGATTAtTCTGTcCTaTAtAAtTCcgC
SARS_coronavirus_civet007 GAGAGgAAAAgAATTTCTAA----TTGTGTTGCTGATTACTCTGTGCTCTACAACTCAAC
SARS_coronavirus_GZ50 GAGAGAAAAAAAATTTCTAA----TTGTGTTGCTGATTACTCTGTGCTCTACAACTCAAC
SARS_coronavirus_Taiwan_TC1 GAGAGAAAAAAAATTTCTAA----TTGTGTTGCTGATTACTCTGTGCTCTACAACTCAAC
Bat_coronavirus_(BtCoV/273/2005) GAaAGAAcAAAgATTTCTgA----TTGTGTTGCaGATTACaCTGTttTCTACAACTCAAC
BtRf-BetaCoV/HeB2013 GAaAGAActAAgATTTCTgA----TTGTGTTGCaGATTACaCTGTttTCTACAACTCAAC
SARS_CORONAVIRUS -----------------AGTGgcAgtaCGTTTtTGCC---gAG-------------GCTT
Severe_acute_respiratory_syndrom ATCaTTTTCcACtTTTAAGTGtTATGGaGTgTCTcCtACTAAaTTaAATGATCTcTGCTT
SARS_coronavirus_civet007 ATCTTTTTCAACCTTTAAGTGCTATGGCGTTTCTGCCACTAAGTTGAATGATCTtTGCTT
SARS_coronavirus_GZ50 ATtTTTTTCAACCTTTAAGTGCTATGGCGTTTCTGCCACTAAGTTGAATGATCTtTGCTT
SARS_coronavirus_Taiwan_TC1 ATtTTTTTCAACCTTTAAGTGCTATGGCGTTTCTGCCACTAAGTTGAATGATCTtTGCTT
Bat_coronavirus_(BtCoV/273/2005) tTCTTTTTCgACtTTcAAcTGtTAcGGaGTcTCTcCttCTAAGTTGAtTGATtTgTGtTT
BtRf-BetaCoV/HeB2013 tTCTTTTTCgACtTTcAAcTGtTAcGGaGTcTCTcCttCTAAGTTGAtTGATtTgTGtTT
SARS_CORONAVIRUS CTtAgAaGcCTcaGCAGcagaTTTctTAGT------------------------------
Severe_acute_respiratory_syndrom taCtAATGTCTATGCAGATTCaTTTGTAaTtAgAGGtGATGAAGTcAGACAAATcGCtCC
SARS_coronavirus_civet007 CTCcAATGTCTATGCAGATTCTTTTGTAGTCAAgGGAGATGAtGTAAGACAAATAGCGCC
SARS_coronavirus_GZ50 CTCcAATGTCTATGCAGATTCTTTTGTAGTCAAgGGAGATGAtGTAAGACAAATAGCGCC
SARS_coronavirus_Taiwan_TC1 CTCcAATGTCTATGCAGATTCTTTTGTAGTCAAgGGAGATGAtGTAAGACAAATAGCGCC
Bat_coronavirus_(BtCoV/273/2005) taCAAgTGTgTATGCAGAcaCaTTTtTgaTaAgAttttccGAAGTcAGACAAgTAGCaCC
BtRf-BetaCoV/HeB2013 taCAAgTGTgTATGCAGAcaCaTTTtTgaTaAgAttttcaGAAGTcAGACAAgTgGCaCC
SARS_CORONAVIRUS --GACAgttTGGccTTgTTGtTG-------TTggcctTTACCAGAcatTTT---------
Severe_acute_respiratory_syndrom AGGgCAAACTGGaaagATTGCTGATTATAATTATAAATTACCAGATGATTTtACAGGCTG
SARS_coronavirus_civet007 AGGACAAACTGGTGTTATTGCTGATTATAATTATAAATTgCCAGATGATTTCAtgGGtTG
SARS_coronavirus_GZ50 AGGACAAACTGGTGTTATTGCTGATTATAATTATAAATTgCCAGATGATTTCAtgGGtTG
SARS_coronavirus_Taiwan_TC1 AGGACAAACTGGTGTTATTGCTGATTATAATTATAAATTgCCAGATGATTTCAtgGGtTG
Bat_coronavirus_(BtCoV/273/2005) tGGtCAgACTGGTGTTATTGCaGAcTAcAATTATAAAcTACCtGAcGAcTTtACAGGCTG
BtRf-BetaCoV/HeB2013 tGGtCAgACTGGTGTTATTGCaGAcTAcAATTATAAAcTACCtGAcGAcTTtACAGGCTG
SARS_CORONAVIRUS -------GCT-------------------------CTcaAgCTGGT--------------
Severe_acute_respiratory_syndrom cGTtATAGCTTGGAATtCTAacAAtcTTGATtCTAaggttggTGGTAATTATAATTAcct
SARS_coronavirus_civet007 TGTCcTtGCTTGGAATACTAGgAACATTGATGCTACTTCAACTGGTAATTATAATTATAA
SARS_coronavirus_GZ50 TGTCcTtGCTTGGAATACTAGgAACATTGATGCTACTTCAACTGGTAATTATAATTATAA
SARS_coronavirus_Taiwan_TC1 TGTCcTtGCTTGGAATACTAGgAACATTGATGCTACTTCAACTGGTAATTATAATTATAA
Bat_coronavirus_(BtCoV/273/2005) TGTtATAGCTTGGAAcACTgctAAgcaaGAcG---------tcGGTAgcTATttT-----
BtRf-BetaCoV/HeB2013 TGTtATAGCTTGGAAcACTgctAAgcaaGAcG---------tcGGTAgcTATttT-----
SARS_CORONAVIRUS ------------TcaAtcTGtCAAGCagcAGCaaagcaAGAGcagCAT------------
Severe_acute_respiratory_syndrom gTATAGaTtgtTTAGgaAgtctAAtCTcAAaCCtTTTGAGAGAGAtATtTCaAcTGaaat
SARS_coronavirus_civet007 ATATAGGTATCTTAGACATGGCAAGCTTAgGCCCTTTGAGAGAGACATATCTAATGTGCC
SARS_coronavirus_GZ50 ATATAGGTATCTTAGACATGGCAAGCTTAgGCCCTTTGAGAGAGACATATCTAATGTGCC
SARS_coronavirus_Taiwan_TC1 ATATAGGTATCTTAGACATGGCAAGCTTAgGCCCTTTGAGAGAGACATATCTAATGTGCC
Bat_coronavirus_(BtCoV/273/2005) -TATAGGTcTCaTcGctcTaGCAAatTaAAaCCCTTTGAaAGAGAC--------------
BtRf-BetaCoV/HeB2013 -TATAGGTcTCaTcGctcTaGCAAatTaAAaCCCTTTGAaAGAGAC--------------
SARS_CORONAVIRUS ------------------------CACCgCcatTGC----------------caGCCATT
Severe_acute_respiratory_syndrom cTatcaggCcGgTaGCAcACCTTGtAatggtgtTGaaggTtTTAATTGTTAcTttCCtTT
SARS_coronavirus_civet007 TTTCTCtTCTGATGGCAAACCTTGCACCCCACCTGC---TCcTAATTGTTATTGGCCATT
SARS_coronavirus_GZ50 TTTCTCccCTGATGGCAAACCTTGCACCCCACCTGC---TCTTAATTGTTATTGGCCATT
SARS_coronavirus_Taiwan_TC1 TTTCTCccCTGATGGCAAACCTTGCACCCCACCTGC---TCTTAATTGTTATTGGCCATT
Bat_coronavirus_(BtCoV/273/2005) -cTtTCATCaGtTGaagAAaaTgGC---------------------------cGtaCAcT
BtRf-BetaCoV/HeB2013 -cTtTCATCaGAaGaaA---------------------------ATgGTgtccGtaCAcT
SARS_CORONAVIRUS ctAgcAGgAgaagTTc----------CcCtACTgCTGcC-----------------tgGA
Severe_acute_respiratory_syndrom AcAatcaTATGGTTTc--------cAacCCACTAaTGGtgTTGGtTACCAACCaTACAGA
SARS_coronavirus_civet007 AAgaGgtTATGGTTTT--------TACACCACTAgTGGCATTGGCTACCAACCTTACAGA
SARS_coronavirus_GZ50 AAATGAtTATGGTTTT--------TACACCACTACTGGCATTGGCTACCAACCTTACAGA
SARS_coronavirus_Taiwan_TC1 AAATGAtTATGGTTTT--------TACACCACTACTGGCATTGGCTACCAACCTTACAGA
Bat_coronavirus_(BtCoV/273/2005) cAgTacGTATGaTTTTAAcCAAaATgtACCtC--------TTGagTACCAAgCcactAGA
BtRf-BetaCoV/HeB2013 cAgTacGTATGaTTTTAAtCAAtATgtACCtC--------TTGagTACCAAgCcactAGA
SARS_CORONAVIRUS GTTGaA------TtTcTTGAACTgTTg-------CGaCtACGtgaTGaGGAaCgAgA---
Severe_acute_respiratory_syndrom GTaGTAGTACTTTCTTTTGAACTTcTAcATGCACCaGCaACtGTTTGTGGACCtAAAaag
SARS_coronavirus_civet007 GTTGTAGTACTTTCTTTTGAACTTTTAAATGCACCGGCCACGGTTTGTGGACCAAAATTA
SARS_coronavirus_GZ50 GTTGTAGTACTTTCTTTTGAACTTTTAAATGCACCGGCCACGGTTTGTGGACCAAAATTA
SARS_coronavirus_Taiwan_TC1 GTTGTAGTACTTTCTTTTGAACTTTTAAATGCACCGGCCACGGTTTGTGGACCAAAATTA
Bat_coronavirus_(BtCoV/273/2005) GTTGTtGTtCTTTCTTTTGAACTTcTtAATGCACCtGCtACaGTgTGTGGACCAAAATTA
BtRf-BetaCoV/HeB2013 GTTGTtGTtCTTTCaTTTGAACTccTcAATGCACCtGCtACaGTgTGTGGACCAAAATTA
SARS_CORONAVIRUS ------------------------------------------AgaGGcTTgACTGccgCc
Severe_acute_respiratory_syndrom TCtACTaAttTGgTTAAaAACaAaTGTGTCAATTTCAACTTcAATGGtTTaACaGGcACa
SARS_coronavirus_civet007 TCCACTGACCTtATTAAGAACCAGTGTGTCAATTTtAAtTTTAATGGAcTCACTGGTACT
SARS_coronavirus_GZ50 TCCACTGACCTtATTAAGAACCAGTGTGTCAATTTtAAtTTTAATGGAcTCACTGGTACT
SARS_coronavirus_Taiwan_TC1 TCCACTGACCTtATTAAGAACCAGTGTGTCAATTTtAAtTTTAATGGAcTCACTGGTACT
Bat_coronavirus_(BtCoV/273/2005) TCCACTtcatTGgTTAAGAACCAGTGcGTCAAcTTCAACTTTAATGGATTtAaaGGTACT
BtRf-BetaCoV/HeB2013 TCCACTtcatTGgTTAAGAACCAGTGcGTCAAcTTCAACTTTAATGGATTtAaaGGTACT
SARS_CORONAVIRUS tcTGc-----tcCCTTCTgCgtAGAaGccT---------------TTTGGCaaTGtTGTT
Severe_acute_respiratory_syndrom GGTGTtcTtACTgagTCTaacAAaAaGTTTCtgCCtTTcCAACAATTTGGCaGaGAcaTT
SARS_coronavirus_civet007 GGTGTGTTAACTCCTTCTTCAAAGAGaTTTCAACCATTTCAACAATTTGGCCGTGATGTT
SARS_coronavirus_GZ50 GGTGTGTTAACTCCTTCTTCAAAGAGaTTTCAACCATTTCAACAATTTGGCCGTGATGTT
SARS_coronavirus_Taiwan_TC1 GGTGTGTTAACTCCTTCTTCAAAGAGaTTTCAACCATTTCAACAATTTGGCCGTGATGTT
Bat_coronavirus_(BtCoV/273/2005) GGTGTGTTgACcgacTCgTCtAAaAcGTTTCAgtCtTTTCAgCAgTTTGGtCGgGATGca
BtRf-BetaCoV/HeB2013 GGTGTGTTgACcgacTCgTCtAAaAcGTTTCAgtCtTTTCAgCAgTTTGGtCGgGATGca
SARS_CORONAVIRUS cCT--------TGAggaAGTTgtaaCacGATtgCagcAttgTTaGcAggATTgcgggTgc
Severe_acute_respiratory_syndrom gCTGAcactACTGATgCtGTc----CGtGATC-CacAgACAcTTGAgATtcTtGACATTa
SARS_coronavirus_civet007 TCTGATTTCACTGATTCcGTT----CGAGATC-CTAAAACATcTGAAATATTAGACATTT
SARS_coronavirus_GZ50 TCTGATTTCACTGATTCcGTT----CGAGATC-CTAAAACATcTGAAATATTAGACATTT
SARS_coronavirus_Taiwan_TC1 TCTGATTTCACTGATTCcGTT----CGAGATC-CTAAAACATcTGAAATATTAGACATTT
Bat_coronavirus_(BtCoV/273/2005) TCTGATTTtACTGATTCAGTg----CGtGAcC-CgcAAACtTTacggATAcTtGACATTT
BtRf-BetaCoV/HeB2013 TCTGATTTtACTGATTCAGTg----CGtGAcC-CgcAAACtTTacggATAcTtGACATTT
SARS_CORONAVIRUS CAatGTGaTCTTTTGGTGtatTcAagGctccctCAgtTGcAAC-------cCATaTGA--
Severe_acute_respiratory_syndrom CACCaTGtTCTTTTGGTGGTGTcAGTGTtATAACACCaGGAACAAATACTTCtaaccAgG
SARS_coronavirus_civet007 CACCtTGCTCTTTTGGgGGTGTAAGTGTAATtACACCTGGAACAAATgCTTCATCTGAAG
SARS_coronavirus_GZ50 CACCtTGCTCTTTTGGgGGTGTAAGTGTAATtACACCTGGAACAAATgCTTCATCTGAAG
SARS_coronavirus_Taiwan_TC1 CACCtTGCTCTTTTGGgGGTGTAAGTGTAATtACACCTGGAACAAATgCTTCATCTGAAG
Bat_coronavirus_(BtCoV/273/2005) CACCGTGCTCTTTTGGTGGTGTgAGTGTcATAACACCaGGAACtAAcACTTCATCTGcAG
BtRf-BetaCoV/HeB2013 CACCGTGCTCTTTTGGTGGTGTgAGTGTcATAACACCaGGAACtAAcACTTCATCTGcAG
SARS_CORONAVIRUS -TGCcGTctT---------TGTTAgCacCAtaGggaagtccaGcTTCTggccCAgTTCct
Severe_acute_respiratory_syndrom TTGCTGTTCTtTATCAgGATGTTAACTGCACaGA-------aGTccCTgttGCtATTC--
SARS_coronavirus_civet007 TTGCTGTTCTATATCAAGATGTTAACTGCACTGA-------TGTTTCTACAttAATTC--
SARS_coronavirus_GZ50 TTGCTGTTCTATATCAAGATGTTAACTGCACTGA-------TGTTTCTACAGCAATTC--
SARS_coronavirus_Taiwan_TC1 TTGCTGTTCTATATCAAGATGTTAACTGCACTGA-------TGTTTCTACAGCAATTC--
Bat_coronavirus_(BtCoV/273/2005) TgGCTGTTCTtTAcCAAGATGTaAACTGCACTGA-------TGTTcCcAgAaCAATaC--
BtRf-BetaCoV/HeB2013 TgGCTGTTCTtTAcCAAGATGTaAACTGCACTGA-------TGTTcCcACAaCAtTaC--
SARS_CORONAVIRUS AgGtAGtagAA---AtACCAtCTTGGacTGagatctTTcATTtTACcGtcACCAccAcGa
Severe_acute_respiratory_syndrom ATGCAGATCAACTtACtCCtaCTTGGCGTG------TTTATTCTACaGGttCtA--ATGT
SARS_coronavirus_civet007 ATGCAGAaCAACTCACACCAGCTTGGCGca------TaTATTCTACTGGAAaCA--ATGT
SARS_coronavirus_GZ50 ATGCAGATCAACTCACACCAGCTTGGCGca------TaTATTCTACTGGAAaCA--ATGT
SARS_coronavirus_Taiwan_TC1 ATGCAGATCAACTCACACCAGCTTGGCGca------TaTATTCTACTGGAAaCA--ATGT
Bat_coronavirus_(BtCoV/273/2005) AaGCAGATCAAtTagCACCctCTTGGCGTG------TTTATaCcACTGGAcCCt--ATGT
BtRf-BetaCoV/HeB2013 ATGCAGATCAAtTagCACCctCTTGGCGTG------TTTATaCcACTGGAcCCt--ATGT
SARS_CORONAVIRUS ATTC----gTCtgGtA-GCTcTtcggTAGtAGCcaattTGgtCATcTgGAC---TgCTAT
Severe_acute_respiratory_syndrom tTTtCAAACaCgtGCAGGCTGTtTaATAGGgGC-----TGAACATGTCaACAacTCaTAT
SARS_coronavirus_civet007 ATTCCAgACTCAAGCAGGCTGTCTTATAGGAGC-----TGAgCATGTCGACACTTCtTAT
SARS_coronavirus_GZ50 ATTCCAgACTCAAGCAGGCTGTCTTATAGGAGC-----TGAgCATGTCGACACTTCtTAT
SARS_coronavirus_Taiwan_TC1 ATTCCAgACTCAAGCAGGCTGTCTTATAGGAGC-----TGAgCATGTCGACACTTCtTAT
Bat_coronavirus_(BtCoV/273/2005) tTTCCAAACaCAAGCAGGgTGcCTTATAGGAGC-----TGAACATGTCaACgCaTCCTAT
BtRf-BetaCoV/HeB2013 tTTCCAAACaCAAGCAGGgTGcCTTATAGGAGC-----TGAACATGTCaACgCaTCCTAT
SARS_CORONAVIRUS tgGTGTtA-------ATTGGAaC--GC-cTTGTcCTcGagggaATtt-------AaggTC
Severe_acute_respiratory_syndrom GAGTGTGACATaCCcATTGGtGCaGGtATaTGcGCTAGTTAtCAgACtcagactAaTTct
SARS_coronavirus_civet007 GAGTGcGACATTCCTATTGGAGCTGGCATTTGTGCTAGTTACCATAC-------AGTTTC
SARS_coronavirus_GZ50 GAGTGcGACATTCCTATTGGAGCTGGCATTTGTGCTAGTTACCATAC-------AGTTTC
SARS_coronavirus_Taiwan_TC1 GAGTGcGACATTCCTATTGGAGCTGGCATTTGTGCTAGTTACCATAC-------AGTTTC
Bat_coronavirus_(BtCoV/273/2005) cAGTGTGACATTCCaATTGGtGCTGGCATTTGTGCTAGcTAtCATAC-------AGccTC
BtRf-BetaCoV/HeB2013 cAGTGTGACATTCCaATTGGtGCTGGCATTTGTGCTAGcTAtCATAC-------AGccTC
SARS_CORONAVIRUS TTccTtgccaTgttgAGTgagAGCggtgAAcCaagacgcagTATTaTtGggTAaAC----
Severe_acute_respiratory_syndrom ccTcggcgggcACGTAGTgtAgctagtcAATC---------cATcaTtGCCTAcACTATG
SARS_coronavirus_civet007 TTcAT-----TACGTAGTACtAGCCAAAAATC---------TATTGTGGCtTATACTATG
SARS_coronavirus_GZ50 TTTAT-----TACGTAGTACtAGCCAAAAATC---------TATTGTGGCtTATACTATG
SARS_coronavirus_Taiwan_TC1 TTTAT-----TACGTAGTACtAGCCAAAAATC---------TATTGTGGCtTATACTATG
Bat_coronavirus_(BtCoV/273/2005) acacT-----TACGgAGTACAgGtCAAAAATC---------cATTGTGGCCTATACTATG
BtRf-BetaCoV/HeB2013 acTtT-----TACGgAGTACAgGtCAAAAATC---------TATTGTGGCCTATACTATG
SARS_CORONAVIRUS ---cTtGGgGCcGAcg----------TTgtTtTgATcgCgC----------CCcACTgcg
Severe_acute_respiratory_syndrom TCAcTtGGTGCaGAAAATTCAgTTGCTTACTCTAATAACtCtATTGCCATACCcACaAAt
SARS_coronavirus_civet007 TCtTTAGGTGCTGAtAgTTCAATTGCTTACTCTAATAACACCATTGCtATACCTACTAAC
SARS_coronavirus_GZ50 TCtTTAGGTGCTGAtAgTTCAATTGCTTACTCTAATAACACCATTGCtATACCTACTAAC
SARS_coronavirus_Taiwan_TC1 TCtTTAGGTGCTGAtAgTTCAATTGCTTACTCTAATAACACCATTGCtATACCTACTAAC
Bat_coronavirus_(BtCoV/273/2005) TCATTAGGTGCTGAAAATTCtgTgGCaTAtgCTAATAAttCCATTGCCATACCTACTAAt
BtRf-BetaCoV/HeB2013 TCATTAGGTGCTGAAAATTCtgTgGCaTAtgCTAATAAttCCATTGCCATACCcACTAAt
SARS_CORONAVIRUS TTcTCcATTctgGTTACTgC--------------------------------CaGTtGA-
Severe_acute_respiratory_syndrom TTTaCtATTAGtGTTACcACAGAAaTtcTaCCaGTgTCTATGaCcAAgACATCaGTAGAT
SARS_coronavirus_civet007 TTTTCAATTAGCaTTACTACAGAAGTAATGCCTGTTTCTATGGCTAAAACcTCCGTAGAT
SARS_coronavirus_GZ50 TTTTCAATTAGCaTTACTACAGAAGTAATGCCTGTTTCTATGGCTAAAACcTCCGTAGAT
SARS_coronavirus_Taiwan_TC1 TTTTCAATTAGCaTTACTACAGAAGTAATGCCTGTTTCTATGGCTAAAACcTCCGTAGAT
Bat_coronavirus_(BtCoV/273/2005) TTTTCtATTAGtGTcACTACtGAAGTgATGCCTGTTTCTATGGCTAAAACATCtGTcGAT
BtRf-BetaCoV/HeB2013 TTTTCtATTAGtGTcACTACtGAAGTgATGCCTGTTTCTATGGCTAAAACATCtGTcGAT
SARS_CORONAVIRUS ------------ATCTGaGGg---TCcACcaAAcGTAaT--------------gcggGGT
Severe_acute_respiratory_syndrom TGTAcaATGTACATtTGtGGtGATTCaACTGAATGcAgcAATCTttTGtTgCAATATGGc
SARS_coronavirus_civet007 TGTAATATGTACATCTGCGGAGATTCTACTGAATGTgCTAATtTGCTtCTCCAATATGGT
SARS_coronavirus_GZ50 TGTAATATGTACATCTGCGGAGATTCTACTGAATGTgCTAATtTGCTtCTCCAATATGGT
SARS_coronavirus_Taiwan_TC1 TGTAATATGTACATCTGCGGAGATTCTACTGAATGTgCTAATtTGCTtCTCCAATATGGT
Bat_coronavirus_(BtCoV/273/2005) TGTAcTATGTACATCTGtGGtGATTCTttaGAgTGcAgTAAcCTaCTGCTtCAgTATGGT
BtRf-BetaCoV/HeB2013 TGTAcTATGTACATCTGtGGtGATTCTttaGAgTGcAgTAAcCTaCTGCTtCAgTATGGT
SARS_CORONAVIRUS gcaTTTcGC---tgAtTttgggGTcCAtTaTCAGaCATTttaGTT---------------
Severe_acute_respiratory_syndrom AGtTTTTGtACACAAtTAAAcCGTGCttTaaCtGGaATaGCTGTTGAACAaGAcAAAAAC
SARS_coronavirus_civet007 AGCTTTTGCAgACAACTAAATCGTGCACTCTCAGGtATTGCTGcTGAACAGGATcgcAAC
SARS_coronavirus_GZ50 AGCTTTTGCACACAACTAAATCGTGCACTCTCAGGtATTGCTGcTGAACAGGATcgcAAC
SARS_coronavirus_Taiwan_TC1 AGCTTTTGCACACAACTAAATCGTGCACTCTCAGGtATTGCTGcTGAACAGGATcgcAAC
Bat_coronavirus_(BtCoV/273/2005) AGCTTcTGtACcCAACTtAATCGTGCcCTtTCtGGCATTGCTGTaGAACAGGATAAAAAC
BtRf-BetaCoV/HeB2013 AGCTTcTGtACcCAACTtAAcCGTGCcCTtTCtGGCATTGCTGTaGAACAGGAcAAAAAC
SARS_CORONAVIRUS ----------TGTTCGtTtAgaTgAAAtctA---AaAcAACACgAACgTcAtgAtAcTcT
Severe_acute_respiratory_syndrom ACcCAAGAAGTtTTtGCaCAAGTCAAACAAATtTACAAAACACCAcCaaTtAAAGATTTT
SARS_coronavirus_civet007 ACACgtGAAGTGTTCGtTCAAGTCAAACAAATGTACAAAACcCCAACTTTgAAAGATTTT
SARS_coronavirus_GZ50 ACACgtGAAGTGTTCGCTCAAGTCAAACAAATGTACAAAACcCCAACTTTgAAAGATTTT
SARS_coronavirus_Taiwan_TC1 ACACgtGAAGTGTTCGCTCAAGTCAAACAAATGTACAAAACcCCAACTTTgAAAtATTTT
Bat_coronavirus_(BtCoV/273/2005) ACcCAAGAgGTGTTtGCcCAgGTtAAACAgATGTAtAAAACACCAACcaTAAgAGATTTT
BtRf-BetaCoV/HeB2013 ACcCAAGAgGTGTTtGCcCAgGTtAAACAgATGTAtAAAACACCAACTaTAAgAGATTTT
SARS_CORONAVIRUS aa------aAAgTcTTCAtAgAacgaACaAcgCaCTacAAgaCtAcCcAAt---------
Severe_acute_respiratory_syndrom GGTGGTTTTAATTTTTCACAAATATTACCAGAtCCatcAAAaCCAAgcAAGAGGTCaTTT
SARS_coronavirus_civet007 GGTGGTTTTAATTTTTCACAAATATTACCtGACCCTCTAAAGCCAACTAAGAGGTCTTTT
SARS_coronavirus_GZ50 GGTGGTTTTAATTTTTCACAAATATTACCtGACCCTCTAAAGCCAACTAAGAGGTCTTTT
SARS_coronavirus_Taiwan_TC1 GGTGGTTTTAATTTTTCACAAATATTACCtGACCCTCTAAAGCCAACTAAGAGGTCTTTT
Bat_coronavirus_(BtCoV/273/2005) GGTGGTTTTAATTTcTCtCAgATATTACCAGACCCTtTgAAGCCtACTAAGcGtTCTTTT
BtRf-BetaCoV/HeB2013 GGTGGTTTTAATTTcTCtCAgATATTACCAGACCCTtTgAAaCCtACTAAGcGtTCTTTT
SARS_CORONAVIRUS -TTagGttCcTGgcaaTTAATtgtaaAAGGTaAa------------------CAgGAAAC
Severe_acute_respiratory_syndrom ATTGAaGAtcTaCTtTTcAAc-----AAaGTGACACTtGCaGATGCTGGCTTCATcAAAC
SARS_coronavirus_civet007 ATTGAGGACTTGCTCTTTAAT-----AAGGTGACACTCGCTGATGCTGGCTTCATGAAgC
SARS_coronavirus_GZ50 ATTGAGGACTTGCTCTTTAAT-----AAGGTGACACTCGCTGATGCTGGCTTCATGAAgC
SARS_coronavirus_Taiwan_TC1 ATTGAGGACTTGCTCTTTAAT-----AAGGTGACACTCGCTGATGCTGGCTTCATGAAgC
Bat_coronavirus_(BtCoV/273/2005) ATaGAGGAtTTGCTCTacAAc-----AAaGTaACACTCGCgGATGCaGGtTTCATGAAAC
BtRf-BetaCoV/HeB2013 ATaGAGGAtTTGCTCTacAAc-----AAaGTaACACTCGCgGATGCaGGCTTCATGAAAC
SARS_CORONAVIRUS tgTATa-----------------ATTAccGaTA------------------------TCg
Severe_acute_respiratory_syndrom AATATGGtGAtTGCCTtGGTGATATTgcTGCTAGAGAcCTCATTTGTGCaCAAAAGTTtA
SARS_coronavirus_civet007 AATATGGCGAATGCCTAGGTGATATTAATGCTAGAGATCTCATTTGTGCGCAgAAGTTCA
SARS_coronavirus_GZ50 AATATGGCGAATGCCTAGGTGATATTAATGCTAGAGATCTCATTTGTGCGCAgAAGTTCA
SARS_coronavirus_Taiwan_TC1 AATATGGCGAATGCCTAGGTGATATTAATGCTAGAGATCTCATTTGTGCGCAgAAGTTCA
Bat_coronavirus_(BtCoV/273/2005) AgTATGcaGAcTGtCTgGGTGgTATTAAcGCaAGAGATCTCATcTGTGCtCAAAAGTTtA
BtRf-BetaCoV/HeB2013 AgTATGcaGAcTGttTgGGTGgTATTAAcGCaAGAGATCTCATcTGTGCtCAAAAGTTtA
SARS_CORONAVIRUS ATGtAC--------------------CTtACTaATGATgT--TTctTtttTA-------G
Severe_acute_respiratory_syndrom AcGGcCTTACtGTtTTGCCACCTtTGCTCACaGATGAaATGATTGCTcaaTACACTtCTG
SARS_coronavirus_civet007 ATGGACTTACAGTgTTGCCACCTCTGCTCACTGATGATATGATTGCTGCCTACACTGCTG
SARS_coronavirus_GZ50 ATGGACTTACAGTgTTGCCACCTCTGCTCACTGATGATATGATTGCTGCCTACACTGCTG
SARS_coronavirus_Taiwan_TC1 ATGGACTTACAGTgTTGCCACCTCTGCTCACTGATGATATGATTGCTGCCTACACTGCTG
Bat_coronavirus_(BtCoV/273/2005) ATGGACTgACAGTcTTaCCACCTtTGCTCACTGATGAcATGATTGCTGCCTAtACTGCaG
BtRf-BetaCoV/HeB2013 ATGGACTcACAGTcTTaCCACCTtTGCTCACTGATGAcATGATTGCaGCCTACACTGCTG
SARS_CORONAVIRUS CaCaTAtTcAGT---------------GGATGGttATgT----------tcaCaCcTttA
Severe_acute_respiratory_syndrom CaC-TgtTagcgGGTACaatCACTtCTGGtTGGACcTTTGGTGCAGGtGCTGCatTaCAA
SARS_coronavirus_civet007 CTC-TAGTTAGTGGTACTGCCACTGCTGGATGGACATTTGGTGCtGGCGCTGCTCTTCAA
SARS_coronavirus_GZ50 CTC-TAGTTAGTGGTACTGCCACTGCTGGATGGACATTTGGTGCtGGCGCTGCTCTTCAA
SARS_coronavirus_Taiwan_TC1 CTC-TAGTTAGTGGTACTGCCACTGCTGGATGGACATTTGGTGCtGGCGCTGCTCTTCAA
Bat_coronavirus_(BtCoV/273/2005) CgC-TcaTTAGTGGcACTGCCACTGCaGGcTGGACtTTcGGTGCAGGtGCaGCcCTTCAA
BtRf-BetaCoV/HeB2013 CgC-TcaTTAGTGGcACTGCCACTGCaGGcTGGACtTTcGGTGCAGGtGCaGCcCTTCAA
SARS_CORONAVIRUS gTACCTTTctggATaacAATtGCTTATA---TCAtTtGtAT-----TTcCaCAAAgcaTT
Severe_acute_respiratory_syndrom ATACCaTTTGCTATGCAAATGGCTTATAGGTTtAATGGtATTGGAGTTACaCAgAATGTT
SARS_coronavirus_civet007 ATACCTTTTGCTATGCAAATGGCaTATAGGTTCAATGGCATTGGAGTTACCCAAAATGTT
SARS_coronavirus_GZ50 ATACCTTTTGCTATGCAAATGGCaTATAGGTTCAATGGCATTGGAGTTACCCAAAATGTT
SARS_coronavirus_Taiwan_TC1 ATACCTTTTGCTATGCAAATGGCaTATAGGTTCAATGGCATTGGAGTTACCCAAAATGTT
Bat_coronavirus_(BtCoV/273/2005) ATACCTTTTGCTATGCAAATGGCTTATAGGTTtAATGGCATTGGAGTTACtCAAAATGTT
BtRf-BetaCoV/HeB2013 ATACCTTTTGCTATGCAAATGGCTTATAGGTTtAAcGGCATTGGAGTTACtCAAAATGTT
SARS_CORONAVIRUS -TCTATtgGttCtttAg--tAATTaCC--------TAAagAGaCGtgTAGTC---TTtAA
Severe_acute_respiratory_syndrom CTCTATGAGAACCAAAAAttgATTGCCAACCAATTTAAtAgtGCtATTgGcaAAATTCAA
SARS_coronavirus_civet007 CTCTATGAGAACCAAAAACAAATcGCCAACCAATTTAACAAGGCGATTAGTCAAATTCAA
SARS_coronavirus_GZ50 CTCTATGAGAACCAAAAACAAATcGCCAACCAATTTAACAAGGCGATTAGTCAAATTCAA
SARS_coronavirus_Taiwan_TC1 CTCTATGAGAACCAAAAACAAATcGCCAACCAATTTAACAAGGCGATTAGTCAAATTCAA
Bat_coronavirus_(BtCoV/273/2005) CTCTAcGAGAACCAAAAACAAATTGCCAAtCAgTTcAAtAAGGCtATTAcTCAAATTCAA
BtRf-BetaCoV/HeB2013 CTCTAcGAGAACCAAAAACAAATTGCCAAtCAgTTcAAtAAGGCtATTAcTCAAATTCAA
SARS_CORONAVIRUS tggTgttTc-------CtTtAgtacttTTGaagAAGCTGC-----GcTGTgcACCttttT
Severe_acute_respiratory_syndrom GAcTCACTTtCttCcACAgCAAgTGCAcTtGGaAAaCTtCAAGAtGTgGTCAACCAaAAT
SARS_coronavirus_civet007 GAATCACTTACAACAACATCAACTGCATTGGGCAAGCTGCAAGACGTTGTtAACCAGAAT
SARS_coronavirus_GZ50 GAATCACTTACAACAACATCAACTGCATTGGGCAAGCTGCAAGACGTTGTtAACCAGAAT
SARS_coronavirus_Taiwan_TC1 GAATCACTTACAACAACATCAACTGCATTGGGCAAGCTGCAAGACGTTGTtAACCAGAAT
Bat_coronavirus_(BtCoV/273/2005) GAATCACTcACAACtACATCgACaGCATTGGGCAAGCTGCAAGACGTaGTCAACCAGAAT
BtRf-BetaCoV/HeB2013 GAATCACTcACAACtACATCgACaGCATTGGGCAAGCTGCAAGACGTaGTCAACCAGAAT
SARS_CORONAVIRUS GtTaAAtaAagAAAtgtAtcTaaaGTTgcgtAgtgatGtgCTAATTccGGTGacATccCg
Severe_acute_respiratory_syndrom GCaCAAGCtTTAAACACgCTT---GTTAAACAACTTAGCTCcAATTTTGGTGCAATTTCA
SARS_coronavirus_civet007 GCTCAAGCATTAAACACACTT---GTTAAACAACTTAGCTCTAATTTTGGTGCAATTTCA
SARS_coronavirus_GZ50 GCTCAAGCATTAAACACACTT---GTTAAACAACTTAGCTCTAATTTTGGTGCAATTTCA
SARS_coronavirus_Taiwan_TC1 GCTCAAGCATTAAACACACTT---GTTAAACAACTTAGCTCTAATTTTGGTGCAATTTCA
Bat_coronavirus_(BtCoV/273/2005) GCTCAAGCATTAAAtACACTT---GTcAAACAACTTAGCTCcAATTTTGGTGCtATTTCA
BtRf-BetaCoV/HeB2013 GCTCAAGCATTAAAtACACTT---GTcAAACAACTTAGCTCcAATTTTGGTGCtATTTCA
SARS_CORONAVIRUS gaaccG--AgATaATgaCC-ccaAtGACTacgTggAGc--AGGatGAcaTcCtcATcGtC
Severe_acute_respiratory_syndrom AGTGTttTAAATGATATCCTTTCACGtCTTGAcAAAGTtGAGGCtGAaGTgCAAATTGAt
SARS_coronavirus_civet007 AGTGTGCTAAATGATATCCTTTCgCGACTTGATAAAGTCGAGGCGGAGGTACAAATTGAC
SARS_coronavirus_GZ50 AGTGTGCTAAATGATATCCTTTCgCGACTTGATAAAGTCGAGGCGGAGGTACAAATTGAC
SARS_coronavirus_Taiwan_TC1 AGTGTGCTAAATGATATCCTTTCgCGACTTGATAAAGTCGAGGCGGAGGTACAAATTGAC
Bat_coronavirus_(BtCoV/273/2005) AGTGcttTgAATGAcATCCTcTCACGACTTGAcAAAGTtGAGGCaGAGGTgCAAATTGAC
BtRf-BetaCoV/HeB2013 AGTGcttTgAATGATATCCTcTCACGACTTGAcAAAGTtGAGGCaGAGGTgCAAATTGAC
SARS_CORONAVIRUS AaGTTGAgaAagGGCcaggagCtgAGaCTTCgAgCCTATG-----------CcAAaaAGG
Severe_acute_respiratory_syndrom AGGTTGATcACAGGCAGACTTCAAAGttTgCAgACaTATGTgACtCAACAAtTAATtAGa
SARS_coronavirus_civet007 AGGTTaATTACAGGCAGACTTCAAAGCCTTCAAACCTATGTAACACAACAACTAATCAGG
SARS_coronavirus_GZ50 AGGTTaATTACAGGCAGACTTCAAAGCCTTCAAACCTATGTAACACAACAACTAATCAGG
SARS_coronavirus_Taiwan_TC1 AGGTTaATTACAGGCAGACTTCAAAGCCTTCAAACCTATGTAACACAACAACTAATCAGG
Bat_coronavirus_(BtCoV/273/2005) AGGTTGATTACAGGCAGAtTaCAAAGCCTcCAAACCTATGTAACACAACAACTAATCAGa
BtRf-BetaCoV/HeB2013 AGGTTGATTACAGGCAGAtTaCAAAGCCTcCAAACCTATGTAACACAACAAtTAATCAGa
SARS_CORONAVIRUS GCTttgGcAAggAGcatgcCaagTggAAcCcTaCTGC-----------------------
Severe_acute_respiratory_syndrom GCTGCaGAAATCAGaGCTTCTGCT--AATCTTGCTGCTACTAAAATGTCaGAGTGTGTaC
SARS_coronavirus_civet007 GCTGCTGAAATCAGGGCTTCTGCT--AATCTTGCTGCTACTAAAATGTCTGAGTGTGTTC
SARS_coronavirus_GZ50 GCTGCTGAAATCAGGGCTTCTGCT--AATCTTGCTGCTACTAAAATGTCTGAGTGTGTTC
SARS_coronavirus_Taiwan_TC1 GCTGCTGAAATCAGGGCTTCTGCT--AATCTTGCTGCTACTAAAATGTCTGAGTGTGTTC
Bat_coronavirus_(BtCoV/273/2005) GCTGCTGAAATCAGGGCTTCTGCT--AATCTTGCTGCTACcAAAATGTCTGAGTGTGTTC
BtRf-BetaCoV/HeB2013 GCTGCTGAAATCAGGaCTTCTGCT--AATCTTGCTGCTACTAAAATGTCTGAGTGTGTTC
SARS_CORONAVIRUS --------------AGgGgTGgCTTTT---GAAtacGaT-CCAgacaATGcCCT------
Severe_acute_respiratory_syndrom TTGGACAATCAAAAAGAGTTGAtTTTTGTGGAAAGGGCTAtCAtCTTATGTCCTTCCCtC
SARS_coronavirus_civet007 TTGGACAATCAAAAAGAGTTGACTTTTGcGGAAAGGGCTACCACCTTATGTCCTTCCCAC
SARS_coronavirus_GZ50 TTGGACAATCAAAAAGAGTTGACTTTTGTGGAAAGGGCTACCACCTTATGTCCTTCCCAC
SARS_coronavirus_Taiwan_TC1 TTGGACAATCAAAAAGAGTTGACTTTTGTGGAAAGGGCTACCACCTTATGTCCTTCCCAC
Bat_coronavirus_(BtCoV/273/2005) TTGGACAATCgAAAAGAGTTGAtTTTTGTGGAAAaGGCTACCACCTTATGTCtTTCCCtC
BtRf-BetaCoV/HeB2013 TTGGACAATCgAAAAGAGTTGAtTTTTGTGGAAAaGGtTAtCACCTTATGTCtTTCCCtC
SARS_CORONAVIRUS -----GaggCACAcaGTGT---------------------------AcCCCAAGcccGAG
Severe_acute_respiratory_syndrom AgtCAGCaCCtCATGGTGTaGTCTTCtTgCATGTgACtTATGTcCCtgCaCAAG--AaAa
SARS_coronavirus_civet007 AAGCAGCCCCgCATGGTGTTGTCTTCCTACATGTCACGTATGTGCCATCCCAgG--AGAG
SARS_coronavirus_GZ50 AAGCAGCCCCgCATGGTGTTGTCTTCCTACATGTCACGTATGTGCCATCCCAgG--AGAG
SARS_coronavirus_Taiwan_TC1 AAGCAGCCCCgCATGGTGTTGTCTTCCTACATGTCACGTATGTGCCATCCCAgG--AGAG
Bat_coronavirus_(BtCoV/273/2005) AAtCcGCtCCACATGGTGTTGTgTTCtTACATGTCACtTATGTGCCATCaCAAG--AaAa
BtRf-BetaCoV/HeB2013 AAtCcGCtCCACATGGTGTTGTgTTCtTACATGTCACtTATGTGCCATCaCAAG--AaAG
SARS_CORONAVIRUS GAA--TggCCAaAGaGtgAGtAcTcgGagctggATGAgGatgAgtCgcAggctCCctaTG
Severe_acute_respiratory_syndrom GAACTTCACaACtGCtCCtGCcATTTG----TCATGAtGGaAAAGCAcACTTtCCTCGTG
SARS_coronavirus_civet007 GAACTTCACCACAGCGCCAGCAATTTG----TCATGAAGGCAAAGCATACTTCCCTCGTG
SARS_coronavirus_GZ50 GAACTTCACCACAGCGCCAGCAATTTG----TCATGAAGGCAAAGCATACTTCCCTCGTG
SARS_coronavirus_Taiwan_TC1 GAACTTCACCACAGCGCCAGCAATTTG----TCATGAAGGCAAAGCATACTTCCCTCGTG
Bat_coronavirus_(BtCoV/273/2005) GAACTTCACCACtGCcCCAGCAATTTG----TCATGAAGGtAAgGCATACTTCCCTCGTG
BtRf-BetaCoV/HeB2013 GAACTTCACCACcGCcCCAGCAATTTG----TCATGAAGGCAAAGCATACTTCCCTCGTG
SARS_CORONAVIRUS A------------ccCcAAcGGCAagcCagaaagGtTTTAcTACAatGtGGAgTccTgTg
Severe_acute_respiratory_syndrom AAGGTGTcTTTGTtTCaAATGGCACaca----cTGGTTTgTaACACAaAGGAATTTTTaT
SARS_coronavirus_civet007 AAGGTGTtTTTGTGTtTAgTGGCACTTC----TTGGTTTATTACACAGAGGAAcTTcTTT
SARS_coronavirus_GZ50 AAGGTGTtTTTGTGTtTAATGGCACTTC----TTGGTTTATTACACAGAGGAAcTTcTTT
SARS_coronavirus_Taiwan_TC1 AAGGTGTtTTTGTGTtTAATGGCACTTC----TTGGTTTATTACACAGAGGAAcTTcTTT
Bat_coronavirus_(BtCoV/273/2005) AAGGTGTgTTTGTaTCTAATGGCAgTTC----TTGGTTTATTACACAGAGGAATTTTTaT
BtRf-BetaCoV/HeB2013 AAGGTGTgTTTGTaTCTAATGGCAgTTt----TTGGTTTATTACACAGAGGAATTTTTaT
SARS_CORONAVIRUS gCTC--------------------------TcTGcgTCctGAAAccatTGcTaTaGTagT
Severe_acute_respiratory_syndrom gaaCCACAAATcATTACTACAGACAAcACATTTGTgTCtGGtAAcTG-TGATGTtGTaAT
SARS_coronavirus_civet007 TCTCCACAAATAATTACTACAGACAATACATTTGTCTCAGGAAATTG-TGATGTCGTTAT
SARS_coronavirus_GZ50 TCTCCACAAATAATTACTACAGACAATACATTTGTCTCAGGAAATTG-TGATGTCGTTAT
SARS_coronavirus_Taiwan_TC1 TCTCCACAAATAATTACTACAGACAATACATTTGTCTCAGGAAATTG-TGATGTCGTTAT
Bat_coronavirus_(BtCoV/273/2005) TCaCCACAgATAATcACaACAGACAATACATTTGTCgCcGGAAgTTG-TGATGTCGTcAT
BtRf-BetaCoV/HeB2013 TCaCCACAgATAATcACaACAGACAATACATTTGTCgCcGGAAgTTG-TGATGTCGTcAT
SARS_CORONAVIRUS cGGCATagatgCtTTAAttctAgAaTTTgTacTtCtagtaaaagTacaCAAttgtAGC--
Severe_acute_respiratory_syndrom aGGaAT-----tgTcAACAACACAGTTTATGATCC---------TtTGCAACCTGAatTa
SARS_coronavirus_civet007 TGGCAT-----CATTAACAACACAGTTTATGATCC---------TCTGCAACCTGAGCTT
SARS_coronavirus_GZ50 TGGCAT-----CATTAACAACACAGTTTATGATCC---------TCTGCAACCTGAGCTT
SARS_coronavirus_Taiwan_TC1 TGGCAT-----CATTAACAACACAGTTTATGATCC---------TCTGCAACCTGAGCTT
Bat_coronavirus_(BtCoV/273/2005) TGGaAT-----CATTAACAAtACAGTTTATGATCC---------TCTGCAACCTGAGCTT
BtRf-BetaCoV/HeB2013 TGGaAT-----CATTAAtAAtACAGTTTATGATCC---------TCTGCAACCTGAGCTT
SARS_CORONAVIRUS -AaTaAagtAAAGAAataAGgcAtAtAAtTAgTaCAAAcAcggTttaAaCACCgtgTaac
Severe_acute_respiratory_syndrom GACTCATTCAAgGAg--GAGtTAGAtAAaTAtTTtAAgAATCATAC-ATCACCAGATGTT
SARS_coronavirus_civet007 GACTCATTCAAAGAA--GAGCTgGACAAGTACTTCAAAAATCATAC-ATCACCAGATGTT
SARS_coronavirus_GZ50 GACTCATTCAAAGAA--GAGCTgGACAAGTACTTCAAAAATCATAC-ATCACCAGATGTT
SARS_coronavirus_Taiwan_TC1 GACTCATTCAAAGAA--GAGCTgGACAAGTACTTCAAAAATCATAC-ATCACCAGATGTT
Bat_coronavirus_(BtCoV/273/2005) GACTCATTtAAAcAA--GAGCTAGACAAGTACTTCAAAAATCATAC-ATCACCtGATGTT
BtRf-BetaCoV/HeB2013 GACTCATTtAAAcAA--GAGCTAGAtAAGTACTTCAAAAATCATAC-ATCACCtGATGTT
SARS_CORONAVIRUS tATgTTaGtagt------tGtAcTAACaacTtTGTt-------------AAGAAAagGct
Severe_acute_respiratory_syndrom GATtTaGGtGACATcTCtGGCATTAAtGCTTCaGTtGTaAACATTCAAAAAGAAATTGAC
SARS_coronavirus_civet007 GATCTTGGCGACATTTCAGGCATTAACGCTTCTGTCGTCAACATTCAAgAAGAAATTGAC
SARS_coronavirus_GZ50 GATCTTGGCGACATTTCAGGCATTAACGCTTCTGTCGTCAACATTCAAAAAGAAATTGAC
SARS_coronavirus_Taiwan_TC1 GATCTTGGCGACATTTCAGGCATTAACGCTTCTGTCGTCAACATTCAAAAAGAAATTGAC
Bat_coronavirus_(BtCoV/273/2005) GATCTTGGCGAtATTTCAGGCATTAACGCTTCTGTCGTCgAtATTCAAAAAGAAATTGAC
BtRf-BetaCoV/HeB2013 GATCTTGGCGACATTTCAGGCATcAAtGCTTCTGTCGTCgAtATTCAgAAAGAAATTGAC
SARS_CORONAVIRUS tagCatAATtA----GCTAtAgtATcccAAgGgAc---------ACtaTtAAcAgCaGct
Severe_acute_respiratory_syndrom CGCCTCAATGAGGTtGCcA-AgAATTTAAATGAATCtCTCATcGAtCTcCAAGAACTtGG
SARS_coronavirus_civet007 CGCCTCAATGAGGTCGCTA-AAAATTTAAATGAATCACTCATcGACCTTCAAGAAtTGGG
SARS_coronavirus_GZ50 CGCCTCAATGAGGTCGCTA-AAAATTTAAATGAATCACTCATTGACCTTCAAGAAtTGGG
SARS_coronavirus_Taiwan_TC1 CGCCTCAATGAGGTCGCTA-AAAATTTAAATGAATCACTCATTGACCTTCAAGAAtTGGG
Bat_coronavirus_(BtCoV/273/2005) CGCCTCAATGAGGTCGCcA-AAAATTTAAATGAATCACTCATTGACCTTCAAGAACTtGG
BtRf-BetaCoV/HeB2013 CGCCTCAATGAGGTtGCcA-AAAATTTAAATGAATCACTCATTGACCTTCAAGAACTtGG
SARS_CORONAVIRUS AAAccATGAGtAgcaagggttttcAaAcctAATactCTaGaTAattcaTTaGGtTt--CT
Severe_acute_respiratory_syndrom AAAgTATGAGCAg----------TATATaAAATGGCCaTGGTA---caTTTGGCTaGGtT
SARS_coronavirus_civet007 AAAATATGAGCAA----------TATATTAAATGGCCTTGGTA---TGTTTGGCTCGGCT
SARS_coronavirus_GZ50 AAAATATGAGCAA----------TATATTAAATGGCCTTGGTA---TGTTTGGCTCGGCT
SARS_coronavirus_Taiwan_TC1 AAAATATGAGCAA----------TATATTAAATGGCCTTGGTA---TGTTTGGCTCGGCT
Bat_coronavirus_(BtCoV/273/2005) cAAATATGAGCAA----------TATATTAAATGGCCTTGGTA---TGTcTGGCTtGGCT
BtRf-BetaCoV/HeB2013 cAAATATGAGCAA----------TATATTAAATGGCCTTGGTA---TGTcTGGCTtGGCT
SARS_CORONAVIRUS TaATAGtaaGACTAg----aATtGTC---------------------TaCATaAgcAGcc
Severe_acute_respiratory_syndrom TtATAGCTGGctTgATTGCCATAGTaATGGTgACAATtaTGCTTTGcTGtATGACcAGTT
SARS_coronavirus_civet007 TCATtGCTGGACTAATTGCCATcGTCATGGTTACAATCTTGCTTTGTTGCATGACTAGTT
SARS_coronavirus_GZ50 TCATtGCTGGACTAATTGCCATcGTCATGGTTACAATCTTGCTTTGTTGCATGACTAGTT
SARS_coronavirus_Taiwan_TC1 TCATtGCTGGACTAATTGCCATcGTCATGGTTACAATCTTGCTTTGTTGCATGACTAGTT
Bat_coronavirus_(BtCoV/273/2005) TtATAGCaGGgtTAgTaGgatTAtTCATGGccAtcATtcTtCTTTGTTaCtTtACTAGcT
BtRf-BetaCoV/HeB2013 TtATAGCaGGgtTAgTaGgatTAtTtATGGccAtcATtcTtCTTTGTTaCtTtACTAGcT
SARS_CORONAVIRUS aTTagAtcTGtgT---GGcCAacctCTtcTGTaaTTtTTaaactattattTGCtgGTTTa
Severe_acute_respiratory_syndrom GcTGtAGTTGtCTCAAGGGCtgtTGtTCTTGTGGaTCcTG---------CTGCAAaTTTG
SARS_coronavirus_civet007 GTTGCAGTTGCCTCAAGGGtgCATGCTCTTGTGGTTCTTG---------CTGCAAGTTTG
SARS_coronavirus_GZ50 GTTGCAGTTGCCTCAAGGGtgCATGCTCTTGTGGTTCTTG---------CTGCAAGTTTG
SARS_coronavirus_Taiwan_TC1 GTTGCAGTTGCCTCAAGGGtgCATGCTCTTGTGGTTCTTG---------CTGCAAGTTTG
Bat_coronavirus_(BtCoV/273/2005) GcTGCAGcTGCtgtAAaGGCAtgTGCTCcTGTGGTTCTTG---------CTGCAgaTTTG
BtRf-BetaCoV/HeB2013 GcTGtAGcTGCtgtAAaGGCAtgTGCTCcTGTGGTTCTTG---------CTGCAgaTTTG
SARS_CORONAVIRUS AgtAtaATGtCTCctA--CAacTtcggtAGtTtTCAcATTACAcT---CAagAACGtctT
Severe_acute_respiratory_syndrom ATGAAGAcGACTCTGAGCCAGTgCTCAAAGGaGTCAAATTACATTACACATAAACGAACT
SARS_coronavirus_civet007 ATGAgGATGACTCTGAGCCAGTTCTCAAgGGTGTCAAATTACATTACACATAAACGAACT
SARS_coronavirus_GZ50 ATGAgGATGACTCTGAGCCAGTTCTCAAgGGTGTCAAATTACATTACACATAAACGAACT
SARS_coronavirus_Taiwan_TC1 ATGAgGATGACTCTGAGCCAGTTCTCAAgGGTGTCAAATTACATTACACATAAACGAACT
Bat_coronavirus_(BtCoV/273/2005) ATGAAGAcGACTCTGAGCCAGTgCTCAAAGGaGTCAAATTACATTACACATAAACGAACT
BtRf-BetaCoV/HeB2013 ATGAAGATGACTCTGAGCCAGTgCTCAAAGGaGTCAAATTACATTACACATAAACGAACT
SARS_CORONAVIRUS T-cTGtA-----TggTagGAtTTTcCACTacTtctTCAgagACTGgttttAgAtCttcgC
Severe_acute_respiratory_syndrom T-ATGGATTTGTTTATGAGAATcTTCACaaTTGGAaCtgTaACTt----tgaAGC----a
SARS_coronavirus_civet007 T-ATGGATTTGTTTATGAGAATTTTtACTCTTGGATCAATTACTG----CACAGC----C
SARS_coronavirus_GZ50 T-ATGGATTTGTTTATGAGAtTTTTtACTCTTGGATCAATTACTG----CACAGC----C
SARS_coronavirus_Taiwan_TC1 T-ATGGATTTGTTTATGAGAtTTTTtACTCTTGGATCAATTACTG----CACAGC----C
Bat_coronavirus_(BtCoV/273/2005) TaATGGATTTGTTTATGAGtATTTTCACaCTTGGATCAATcACac----gtCAaC----C
BtRf-BetaCoV/HeB2013 T-ATGGATTTGTTTATGAGtATTTTCACaCTTGGATCAATTACac----gtCAaC----C
SARS_CORONAVIRUS AGGcAAgATT----ATcCaTtcCCTGCgcGTcCTcT---------------GActtCagT
Severe_acute_respiratory_syndrom AGGtgAAATcaAggATGCTaCTCCTtCAgaTttTGTTCgcGCTACtGCAACGATACCGaT
SARS_coronavirus_civet007 AGtAAAAATTGACAATGCTTCTCaTGCAAGTACTGTTCgTGCTACAGCAACGATACCGCT
SARS_coronavirus_GZ50 AGtAAAAATTGACAATGCTTCTCCTGCAAGTACTGTTCATGCTACAGCAACGATACCGCT
SARS_coronavirus_Taiwan_TC1 AGtAAAAATTGACAATGCTTCTCCTGCAAGTACTGTTCATGCTACAGCAACGATACCGCT
Bat_coronavirus_(BtCoV/273/2005) AaGtAAgATTGAaAATGCTTtTCtTGCAAGTACTGTTCATGCTACtGCAACGATACCGCT
BtRf-BetaCoV/HeB2013 AaGtAAgATTGAaAATGCTTtTCtTGCAAGTACTGTTCATGCTACtGCAACGATACCGCT
SARS_CORONAVIRUS ACA--------------TCaaAcGaaTT-----TGatGTTtCA------aCTGgTTTT--
Severe_acute_respiratory_syndrom ACAAGCCTCACTCCCTTTCGGATGGCTTaTTgTTGGCGTTGCACTTCTTGCTGTTTTTCA
SARS_coronavirus_civet007 ACAAGCCTCACTCCCTTTCGGATGGCTTGTTATTGGCGTTGCAtTTCTTGCTGTTTTTCA
SARS_coronavirus_GZ50 ACAAGCCTCACTCCCTTTCGGATGGCTTGTTATTGGCGTTGCAtTTCTTGCTGTTTTTCA
SARS_coronavirus_Taiwan_TC1 ACAAGCCTCACTCCCTTTCGGATGGCTTGTTATTGGCGTTGCAtTTCTTGCTGTTTTTCA
Bat_coronavirus_(BtCoV/273/2005) ACAAGCCTCAtTCtCTTTCcGATGGCTTGTTATTGGCGTTGCACTTCTTGCTGTTTTTCA
BtRf-BetaCoV/HeB2013 ACAAGCCTCACTCtCTTTCcGATGGCTTGTTgcTGGCGTTGCACTTCTTGCTGTTTTTCA
SARS_CORONAVIRUS --GtGCTcCaAAgAcAA----------------------------CgTATACAccaGGtA
Severe_acute_respiratory_syndrom GAGCGCTtCCAAAATcATaaCcCTCAAaAAgAGATGGCAaCTAGCaCTcTcCA-AGGGtg
SARS_coronavirus_civet007 GAGCGCTACCAAAATAATTGCGCTCAATAAAAGATGGCAGCTAGCCCTtTAtA-AGGGCt
SARS_coronavirus_GZ50 GAGCGCTACCAAAATAATTGCGCTCAATAAAAGATGGCAGCTAGCCCTtTAtA-AGGGCt
SARS_coronavirus_Taiwan_TC1 GAGCGCTACCAAAATAATTGCGCTCAATAAAAGATGGCAGCTAGCCCTtTAtA-AGGGCt
Bat_coronavirus_(BtCoV/273/2005) aAGCGCTtCCAAAgTAATTGCGCTtcATAAgAagTGGCAGCTtGCCtTATACA-AaGGCA
BtRf-BetaCoV/HeB2013 aAGCGCTtCCAAAgTgATTGCGCTtcATAAgAGgTGGCAaCTtGCCtTAcACA-AaGGCA
SARS_CORONAVIRUS TttgGTTtATacGtggCTT--------TATTaGTTgCA--TTgTTaACATgc--------
Severe_acute_respiratory_syndrom TtCAcTTtgTTTGCAACTTgCTGtTGtTgTTTGTaACAgTTTAcTCACAcCTTTTGCTcG
SARS_coronavirus_civet007 TCCAGTTCATTaGCAAtTTACTGCTGCTATTTGTTACcATcTATTCACATCTTTTGCTTG
SARS_coronavirus_GZ50 TCCAGTTCATTTGCAAtTTACTGCaGCTATTTGTTACcATcTATTCACATCTTTTGCTTG
SARS_coronavirus_Taiwan_TC1 TCCAGTTCATTTGCAAtTTACTGCTGCTATTTGTTACcATcTATTCACATCTTTTGCTTG
Bat_coronavirus_(BtCoV/273/2005) TCCAaTTagTTTGtAACTTgCTGCTaCTcTTTGTgACAATTTATTCACATtTTcTaCTTt
BtRf-BetaCoV/HeB2013 TCCAaTTtgTTTGCAACTTgCTGCTaCTcTTTGTgACAATTTATTCACATCTTcTaCTTt
SARS_CORONAVIRUS ------CAaaCA----------------aTAggTtTATGtaacaATtTAgcTcCTttctT
Severe_acute_respiratory_syndrom TtGCTGCtGGCcTtGAaGCcCctTTTcTcTAtCTtTATGCtTTagTcTAcTTctTgCAga
SARS_coronavirus_civet007 TCGCTGCAGGtATGGAGGCGCAATTTTTGTACCTCTATGCCTTGATATATTTTCTACAAT
SARS_coronavirus_GZ50 TCGCTGCAGGtATGGAGGCGCAATTTTTGTACCTCTATGCCTTGATATATTTTCTACAAT
SARS_coronavirus_Taiwan_TC1 TCGCTGCAGGtATGGAGGCGCAATTTTTGTACCTCTATGCCTTGATATATTTTCTACAAT
Bat_coronavirus_(BtCoV/273/2005) TaGCTGCtGGCATtGAGGtaCAATTTTTGTACaTCTATGCtTTGATtTATaTTCTgCAAa
BtRf-BetaCoV/HeB2013 TaGCTGCtGGCATGGAGGtaCAATTTTTGTACaTCTATGCtTTGATtTATaTTCTgCAAa
SARS_CORONAVIRUS aaAagAggGTgTGTAG-------------TGTTtGgTTgGTTtG--GTaCAAgatC---A
Severe_acute_respiratory_syndrom GtATAAACtTtgtaAGAATaATaATGAGgctTTGGCTTTGcTGGAAaTGCcgtTCCAAaA
SARS_coronavirus_civet007 GCATcAACGcAgGTAGAATTATTATGAGATGTTGGCTTTGTTGGAAGTGCAAATCCAAGA
SARS_coronavirus_GZ50 GCATcAACGcATGTAGAATTATTATGAGATGTTGGCTTTGTTGGAAGTGCAAATCCAAGA
SARS_coronavirus_Taiwan_TC1 GCATcAACGcATGTAGAATTATTATGAGATGTTGGCTTTGTTGGAAGTGCAAATCCAAGA
Bat_coronavirus_(BtCoV/273/2005) tttTAAgCtTtTGcAGAtTTgTcATGAGATGcTGGCTTTGTTGGAAGTGCAAATCCAAGA
BtRf-BetaCoV/HeB2013 cttTAAgttTtTGcAGAtTTATcATGAGATGcTGGCTTTGTTGGAAGTGCAAATCCAAGA
SARS_CORONAVIRUS AttggTTgCTcTgTGAa----------------------------------ATaAgaAtT
Severe_acute_respiratory_syndrom ACCCATTACTTTATGATGCCAACTAtTTTcTTTGCTGGCAtACtaATtgtTAcGACTAtT
SARS_coronavirus_civet007 ACCCATTACTTTATGAaGCCAACTACTTTGTTTGCTGGCACACACATAACTATGACTACT
SARS_coronavirus_GZ50 ACCCATTACTTTATGATGCCAACTACTTTGTTTGCTGGCACACACATAACTATGACTACT
SARS_coronavirus_Taiwan_TC1 ACCCATTACTTTATGATGCCAACTACTTTGTTTGCTGGCACACACATAACTATGACTACT
Bat_coronavirus_(BtCoV/273/2005) AtCCATTAtTaTATGATGCCAACTACTTTGTTTGCTGGCAtACAtATAAtTATGACTACT
BtRf-BetaCoV/HeB2013 AtCCATTAtTaTATGATGCCAACTACTTTGTTTGCTGGCAtACAtATAAtTATGACTACT
SARS_CORONAVIRUS GTcTttCtTATAAt--------------AATTGTC-caACTTAgGGTcA----ATTTCtg
Severe_acute_respiratory_syndrom GTATACCtTAcAAtAGTGTaACttcTtCAATTGTCaTTACTTcAGGTGAtGGCAcaaCAA
SARS_coronavirus_civet007 GTATACCATATAACAGTGTCACAGATACAATTGTCGTTACTgAAGGTGACGGCATTTCAA
SARS_coronavirus_GZ50 GTATACCATATAACAGTGTCACAGATACAATTGTCGTTACTgAAGGTGACGGCATTTCAA
SARS_coronavirus_Taiwan_TC1 GTATACCATATAACAGTGTCACAGATACAATTGTCGTTACTgAAGGTGACGGCATTTCAA
Bat_coronavirus_(BtCoV/273/2005) GTATACCATAcAACAGTGTCACAGATACAATcGTCGTTACTTcAGGTGACGGCATTTCAA
BtRf-BetaCoV/HeB2013 GTATACCATAcAACAGTGTCACAGATACAATcGTCGTTACTTcAGGTGACGGCATTTCAA
SARS_CORONAVIRUS tAC--------AAAcAAcACcAtCcAATTtaTaagTA----------------aCtGGTt
Severe_acute_respiratory_syndrom gtCCtAtttctgAAcAtGACTACCAgATTGGTGGTTATaCTGAaaAatGGgAaTCtGGaG
SARS_coronavirus_civet007 CACCAAAACTCAAAGAAGACTACCAAATTGGTGGTTATTCTGAGGATAGGCACTCAGGTG
SARS_coronavirus_GZ50 CACCAAAACTCAAAGAAGACTACCAAATTGGTGGTTATTCTGAGGATAGGCACTCAGGTG
SARS_coronavirus_Taiwan_TC1 CACCAAAACTCAAAGAAGACTACCAAATTGGTGGTTATTCTGAGGATAGGCACTCAGGTG
Bat_coronavirus_(BtCoV/273/2005) CACCAgAACTCAAAGAAGACTACCAAATTGGTGGTTATTCTGAGGATtGGCACTCAGGTG
BtRf-BetaCoV/HeB2013 CACCAgAACTCAAAGAAGACTACCAAATTGGTGGTTATTCTGAGGATtGGCAtTCAGGTG
SARS_CORONAVIRUS TTAtg------GTtGTTGT--gTaaCTgTTT-------------------------TCTt
Severe_acute_respiratory_syndrom TaAAAGACTgTGTtGTatTACAcaGtTAcTTCACttcAGacTAtTACCAGCTgtAcTCaA
SARS_coronavirus_civet007 TTAAAGACTATGTCGTTGTACATGGCTATTTCACCGAAGTTTACTACCAGCTTGAGTCTA
SARS_coronavirus_GZ50 TTAAAGACTATGTCGTTGTACATGGCTATTTCACCGAAGTTTACTACCAGCTTGAGTCTA
SARS_coronavirus_Taiwan_TC1 TTAAAGACTATGTCGTTGTACATGGCTATTTCACCGAAGTTTACTACCAGCTTGAGTCTA
Bat_coronavirus_(BtCoV/273/2005) TTAAAGACTATGTCGTTGTACATGGCTATTTCACCGAAGTTcACTACCAGCTTGAGTCTA
BtRf-BetaCoV/HeB2013 TTAAAGACTATGTCGTTGTACATGGCTATTTCACCGAAGTTcACTACCAGCTTGAGTCTA
SARS_CORONAVIRUS tgtAgA-------AaACAtccGTAaTaggAccttTgtATTCT--------gAggActTTG
Severe_acute_respiratory_syndrom CtCAAtTgAgTACAGACACTGGTgTTGAAcATGtTACcTTCTTCATCTacAAtAAaaTTG
SARS_coronavirus_civet007 CACAAATTACTACAGACACTGGTATTGAAAATGCTACATTCTTCATCTTTAACAAGCTTG
SARS_coronavirus_GZ50 CACAAATTACTACAGACACTGGTATTGAAAATGCTACATTCTTCATCTTTAACAAGCTTG
SARS_coronavirus_Taiwan_TC1 CACAAATTACTACAGACACTGGTATTGAAAATGCTACATTCTTCATCTTTAACAAGCTTG
Bat_coronavirus_(BtCoV/273/2005) CACAAATTACTACAGACACTGGTATTcAAAAcGCTACATTCTTCATCTTTAACAAGCTTG
BtRf-BetaCoV/HeB2013 CACAAATTACTACAGACACTGGTATTcAAAAcGCTACATTCTTCATCTTTAACAAGCTTG
SARS_CORONAVIRUS TaAgtaAagC---ACCGtcTaTGC-AATACA--------AaGttTCTTtAGaAGTTaT--
Severe_acute_respiratory_syndrom TTgAtGAgCCtgaAgaacATGTcCAAATtCACACAATCGACGGtTCaTCcGGAGTTGTTA
SARS_coronavirus_civet007 TTAAAGACCC---ACCGAATGTGCAAATACACACAATCGACGGCTCTTCAGGAGTTGcTA
SARS_coronavirus_GZ50 TTAAAGACCC---ACCGAATGTGCAAATACACACAATCGACGGCTCTTCAGGAGTTGcTA
SARS_coronavirus_Taiwan_TC1 TTAAAGACCC---ACCGAATGTGCAAATACACACAATCGACGGCTCTTCAGGAGTTGcTA
Bat_coronavirus_(BtCoV/273/2005) TTAAgGAtCC---gCCGAATGTGCAAATACACACAATCGACGGCTCTTCAGGAGTTGTaA
BtRf-BetaCoV/HeB2013 TTAAAGgtCC---gCCGAATGTGCAAATACACACAATCGACGGCTCTTCAGGAGTTGTaA
SARS_CORONAVIRUS --------ATG-------TTTATagTGAcCacACtGgtaAtTACcAGtGTaC--TcactA
Severe_acute_respiratory_syndrom ATCCAGtAATGGAaCCAATTTATGATGAaCCGAC-GACGACTACTAGCGTGCCTTTGTAA
SARS_coronavirus_civet007 ATCCAGCAAcGGATCCAATTTATGATGAGCCGAC-GACGACTACTAGCGTGCCTTTGTAA
SARS_coronavirus_GZ50 ATCCAGCAATGGATCCAATTTATGATGAGCCGAC-GACGACTACTAGCGTGCCTTTGTAA
SARS_coronavirus_Taiwan_TC1 ATCCAGCAATGGATCCAATTTATGATGAGCCGAC-GACGACTACTAGCGTGCCTTTGTAA
Bat_coronavirus_(BtCoV/273/2005) ATCCAGCAATGGAcCCAATTTATGATGAGCCGAC-GACGACTACTAGCGTGCCTTTGTAA
BtRf-BetaCoV/HeB2013 ATCCAGCAATGGAcCCAATTTATGATGAGCCGAC-GACGACTACTAGCGTGCCTTTGTAA
SARS_CORONAVIRUS GCgaAgaAgAaTcAccAgGAgtcaAataACTtcTatGT-------aAAgCAaGTAa----
Severe_acute_respiratory_syndrom GCACAAGctgaTGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAgACAGGTACGTTA
SARS_coronavirus_civet007 GCACAAGAAAGTGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAAACAGGTACGTTA
SARS_coronavirus_GZ50 GCACAAGAAAGTGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAAACAGGTACGTTA
SARS_coronavirus_Taiwan_TC1 GCACAAGAAAGTGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAAACAGGTACGTTA
Bat_coronavirus_(BtCoV/273/2005) GCACAAGAAAGTGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAAACAGGTACGTTA
BtRf-BetaCoV/HeB2013 GCACAAGAAAGTGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAAACAGGTACGTTA
SARS_CORONAVIRUS --AGTTtgaAaCcTA------------------GTGaTgTTaaTaCc-----tAtTgGCa
Severe_acute_respiratory_syndrom ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTtACACTAGCC
SARS_coronavirus_civet007 ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTCACACTAGCC
SARS_coronavirus_GZ50 ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTCACACTAGCC
SARS_coronavirus_Taiwan_TC1 ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTCACACTAGCC
Bat_coronavirus_(BtCoV/273/2005) ATAGTTAATAGCGTACTTCTTTTTgTTGCTTTCGTGGTATTCTTGCTAGTtACACTAGCC
BtRf-BetaCoV/HeB2013 ATAGTTAATAGCGTACTTCTTTTTgTTGCTTTCGTGGTATTCTTGCTAGTtACACTAGCC
SARS_CORONAVIRUS AatCTacCaatGgTTC-----------TAaaGCcGaAAaAcccTgA--GgGAGaTcAcgc
Severe_acute_respiratory_syndrom ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTcTt---
SARS_coronavirus_civet007 ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTTTA---
SARS_coronavirus_GZ50 ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTTTA---
SARS_coronavirus_Taiwan_TC1 ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTTTA---
Bat_coronavirus_(BtCoV/273/2005) ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTTTA---
BtRf-BetaCoV/HeB2013 ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTTTA---
SARS_CORONAVIRUS actAAAttAA-----------TAggCGtGTGcTtAgAATaTa-----TTtTaAAatAacc
Severe_acute_respiratory_syndrom GTAAAACCttCttTTTACGTtTACTCtCGTGTTAAAAATCTGAAtTCTTCTa---GAGTT
SARS_coronavirus_civet007 GTAAAACCAACGGTTTACGTCTACTCGCGTGTTAAAAATCTGAACTCTTCTGAAGGAGTT
SARS_coronavirus_GZ50 GTAAAACCAACGGTTTACGTCTACTCGCGTGTTAAAAATCTGAACTCTTCTGAAGGAGTT
SARS_coronavirus_Taiwan_TC1 GTAAAACCAACGGTTTACGTCTACTCGCGTGTTAAAAATCTGAACTCTTCTGAAGGAGTT
Bat_coronavirus_(BtCoV/273/2005) GTAAAACCAACaGTTTACGTtTACTCGCGTGTTAAAAATCTGAACTCcTCTGAttGtGTT
BtRf-BetaCoV/HeB2013 GTAAAACCAACaGTTTACGTtTACTCGCGTGTTAAAAATCTGAACTCTTCTGAttGtGTT
SARS_CORONAVIRUS atcaATaTTCT--TaaAcACaAAtTccCTAagA------------TtTTTGaAA------
Severe_acute_respiratory_syndrom CCTGATCTTCTGGTCTAAACGAACTAAaTATTAtatTagTTtTTCTGTTTGGAACTTTAA
SARS_coronavirus_civet007 CCTGATCTTCTGGTCTAAACGAACTAACTATTA---TTATTATTCTGTTTGGAACTTTAA
SARS_coronavirus_GZ50 CCTGATCTTCTGGTCTAAACGAACTAACTATTA---TTATTATTCTGTTTGGAACTTTAA
SARS_coronavirus_Taiwan_TC1 CCTGATCTTCTGGTCTAAACGAACTAACTATTA---TTATTATTCTGTTTGGAACTTTAA
Bat_coronavirus_(BtCoV/273/2005) CCTGATCTTCTGGTCTAAACGAACTAACTATTA-------TtTTCTGTTTGGAACTTTAA
BtRf-BetaCoV/HeB2013 CCTGATCTTCTGGTCTAAACGAACTAACTA------TTATTATTCTGTTTGGAACTTTAA
SARS_CORONAVIRUS ------TTAcCcTGt------------------TTtCCtTcaAGGtcCaTAAgAAAaggC
Severe_acute_respiratory_syndrom ttTTa---gcCATGGCAGAttcCAACGGTACTATTACCGTTGAaGAGCTTAAAAAgCTCC
SARS_coronavirus_civet007 CATTGCTTATCATGGCAGA---CAACaGTACTATTACCGTTGAGGAGCTTAAgcAACTCC
SARS_coronavirus_GZ50 CATTGCTTATCATGGCAGA---CAACGGTACTATTACCGTTGAGGAGCTTAAAcAACTCC
SARS_coronavirus_Taiwan_TC1 CATTGCTTATCATGGCAGA---CAACGGTACTATTACCGTTGAGGAGCTTAAAcAACTCC
Bat_coronavirus_(BtCoV/273/2005) CATTGCTTATCATGGCtGA---gAACGGaACcATTtCtGTTGAGGAGCTTAAAAgACTCC
BtRf-BetaCoV/HeB2013 CATTGCTTATCATGGCtGA---gAACGGaACcATTtCtGTTGAGGAGCTTAAAAgACTCC
SARS_CORONAVIRUS TGa------GagACaTAtTcAaAaG-----------------------------TgCAAT
Severe_acute_respiratory_syndrom TtGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTtaCaTGGATTtgtcTtCTACAAT
SARS_coronavirus_civet007 TGGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTAGCCTGGATTATGTTACTACAAT
SARS_coronavirus_GZ50 TGGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTAGCCTGGATTATGTTACTACAAT
SARS_coronavirus_Taiwan_TC1 TGGAACAATGGAACCTAGTAATAGGTTTCCTATgCCTAGCCTGGATTATGTTACTACAAT
Bat_coronavirus_(BtCoV/273/2005) TGGAACAATGGAACCTAGTAATAGGcTTCCTcTTCCTcGCCTGGATTATGTTAtTACAAT
BtRf-BetaCoV/HeB2013 TGGAACAATGGAACCTAGTAATAGGcTTCCTtTTCCTcGCCTGGATTATGTTAtTACAAT
SARS_CORONAVIRUS -----TATTCgcActaGAAtAaacTcT-----------gAaCTcacTTTCCaTCcaaCTt
Severe_acute_respiratory_syndrom TTGCCTATgCcAAcaGGAAtAGGTTTTTGTAtATAATtAAGtTaaTTTTCC-TCTGGCTg
SARS_coronavirus_civet007 TTGCCTATTCTAATCGGAACAGGTTTTTGTACATAATAAAGCTTGTTTTCC-TCTGGCTC
SARS_coronavirus_GZ50 TTGCCTATTCTAATCGGAACAGGTTTTTGTACATAATAAAGCTTGTTTTCC-TCTGGCTC
SARS_coronavirus_Taiwan_TC1 TTGCCTATTCTAATCGGAACAGGTTTTTGTACATAATAAAGCTTGTTTTCC-TCTGGCTC
Bat_coronavirus_(BtCoV/273/2005) TTGCCTATTCTAATCGGAACAGGcTTTTGTACATAATAAAGCTTGTcTTCC-TCTGGCTC
BtRf-BetaCoV/HeB2013 TTGCCTATTCTAATCGGAACAGGcTTTTGTACATAATAAAGCTTGTcTTCC-TCTGGCTC
SARS_CORONAVIRUS TTG----------------------TTGTttTTGtgGtaaTaaACAcccaaAAaTGGaTc
Severe_acute_respiratory_syndrom TTaTGGCCAGTAACttTaGCTTGtTTTGTGCTTGCTGCTGTtTACAGAATaAATTGGaTc
SARS_coronavirus_civet007 TTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTCTACAGAATTAATTGGGTG
SARS_coronavirus_GZ50 TTGTGGCCAGTAACACTTGCTTGtTTTGTGCTTGCTGCTGTCTACAGAATTAATTGGGTG
SARS_coronavirus_Taiwan_TC1 TTGTGGCCAGTAACACTTGCTTGtTTTGTGCTTGCTGCTGTCTACAGAATTAATTGGGTG
Bat_coronavirus_(BtCoV/273/2005) TTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTtTACAGAATTAATTGGGTG
BtRf-BetaCoV/HeB2013 TTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTtTACAGAATTAATTGGGTG
SARS_CORONAVIRUS AtT-aCaaaATTGaaAT--------------TcacAGaCTTtA------aTAaCaACaTT
Severe_acute_respiratory_syndrom ACcGGtGGaATTGCtATcGCAATGGCTTGTcTTGTAGGCTTGATGTGGCTcAGCTAC-TT
SARS_coronavirus_civet007 ACTGGCGGGATTGCGATTGCAATGGCTTGTATTGTAGGCTTGATGTGGCTTAGCTAC-TT
SARS_coronavirus_GZ50 ACTGGCGGGATTGCGATTGCAATGGCTTGTATTGTAGGCTTGATGTGGCTTAGCTAC-TT
SARS_coronavirus_Taiwan_TC1 ACTGGCGGGATTGCGATTGCAATGGCTTGTATTGTAGGCTTGATGTGGCTTAGCTAC-TT
Bat_coronavirus_(BtCoV/273/2005) ACTGGCGGtATTGCGATTGCAATGGCTTGcATcGTAGGCTTGATGTGGCTTAGCTAC-TT
BtRf-BetaCoV/HeB2013 ACTGGCGGtATTGCGATTGCAATGGCTTGcATcGTAGGCTTGATGTGGCTTAGCTAC-TT
SARS_CORONAVIRUS aGTaGCgTtaTTaAcaataagtaggGaCTGggTctTCGaAtC----tAAaGTaGT-----
Severe_acute_respiratory_syndrom CaTTGCTTCtTTCA-----------GaCTGTTTGCgCGTACgCGtTCcATGTGGTCATTC
SARS_coronavirus_civet007 CGTTGCTTCCTTCA-----------GGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTC
SARS_coronavirus_GZ50 CGTTGCTTCCTTCA-----------GGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTC
SARS_coronavirus_Taiwan_TC1 CGTTGCTTCCTTCA-----------GGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTC
Bat_coronavirus_(BtCoV/273/2005) CGTTGCTTCCTTCA-----------GGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTC
BtRf-BetaCoV/HeB2013 tGTTGCTTCCTTCA-----------GGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTC
SARS_CORONAVIRUS -ACCaAaAAtCcA----------------GCCTCTt---------ATTaTG-ttAGACtt
Severe_acute_respiratory_syndrom AAtCCAGAAACtAACATTCTTCTCAAcGTGCCaCTCCatGGcACtATTcTGACCAGACCG
SARS_coronavirus_civet007 AACCCAGAAACAAACATTCTTCTCAATGTGCCTCTCCGGGGGACAATTGTGACCAGACCG
SARS_coronavirus_GZ50 AACCCAGAAACAAACATTCTTCTCAATGTGCCTCTCCGGGGGACAATTGTGACCAGACCG
SARS_coronavirus_Taiwan_TC1 AACCCAGAAACAAACATTCTTCTCAATGTGCCTCTCCGGGGGACAATTGTGACCAGACCG
Bat_coronavirus_(BtCoV/273/2005) AACCCAGAAACAAACATTCTTCTCAATGTGCCTCTtCGaGGGACAATTGTaACCAGACCG
BtRf-BetaCoV/HeB2013 AACCCAGAAACAAACATTCTTCTCAATGTGCCTCTtCGaGGGACAATTGTaACCAGACCG
SARS_CORONAVIRUS CTCAgtGgAAGcaAAaTaaaCAcc---------ATCATT-------------aAATGGta
Severe_acute_respiratory_syndrom CTtcTaGAAAGTGAACTcGTaATcGGaGCTGTGATCcTTCGTGGaCAtCTtCGtATtGCt
SARS_coronavirus_civet007 CTCATGGAAAGTGAACTTGTCATTGGTGCTGTGATCATTCGTGGTCACtTGCGAATGGCC
SARS_coronavirus_GZ50 CTCATGGAAAGTGAACTTGTCATTGGTGCTGTGATCATTCGTGGTCACtTGCGAATGGCC
SARS_coronavirus_Taiwan_TC1 CTCATGGAAAGTGAACTTGTCATTGGTGCTGTGATCATTCGTGGTCACtTGCGAATGGCC
Bat_coronavirus_(BtCoV/273/2005) CTCATGGAAAGTGAACTTGTCATTGGcGCTGTGATCATTCGTGGTCACCTGCGAATGGCt
BtRf-BetaCoV/HeB2013 CTCATGGAAAGTGAACTTGTCATTGGcGCTGTGATCATTCGTGGTCACCTGCGAATGGCt
SARS_CORONAVIRUS GGACA-------------------------GggtTatCAAA-------------------
Severe_acute_respiratory_syndrom GGACACcatCTAGGaCGCTGTGACATcAAGGACCTGCCtAAAGAaATCACTGTtGCTACA
SARS_coronavirus_civet007 GGACACTCCCTAGGGCGCTGTGACATTAAGGACCTGCCAAAAGAGATCACTGTGGCTACA
SARS_coronavirus_GZ50 GGACACTCCCTAGGGCGCTGTGACATTAAGGACCTGCCAAAAGAGATCACTGTGGCTACA
SARS_coronavirus_Taiwan_TC1 GGACACTCCCTAGGGCGCTGTGACATTAAGGACCTGCCAAAAGAGATCACTGTGGCTACA
Bat_coronavirus_(BtCoV/273/2005) GGACACTCCCTAGGGCGCTGTGAtATTAAGGACCTGCCAAAgGAGATCACTGTGGCTACA
BtRf-BetaCoV/HeB2013 GGACACTCCCTAGGGCGCTGTGAtATTAAGGACCTGCCAAAgGAGATCACTGTGGCTACg
SARS_CORONAVIRUS ----------ccTCTTAgTACcAtTg------GTCcCAGagaCaTGTAtaGCAtgGAacC
Severe_acute_respiratory_syndrom TCACGAACGCTTTCTTATTACAAATTgGGAGCtTCGCAG---CGTGTA-GcaggTGAcTC
SARS_coronavirus_civet007 TCACGAACGCTTTCTTATTACAAATTAGGAGCGTCGCAG---CGTGTA-GGCACTGATTC
SARS_coronavirus_GZ50 TCACGAACGCTTTCTTATTACAAATTAGGAGCGTCGCAG---CGTGTA-GGCACTGATTC
SARS_coronavirus_Taiwan_TC1 TCACGAACGCTTTCTTATTACAAATTAGGAGCGTCGCAG---CGTGTA-GGCACTGATTC
Bat_coronavirus_(BtCoV/273/2005) TCACGAACGCTTTCTTATTACAAATTAGGAGCGTCGCAG---CGTGTA-GGCACTGATTC
BtRf-BetaCoV/HeB2013 TCACGAACGCTTTCTTATTACAAATTAGGAGCGTCGCAG---CGTGTA-GGCACTGATTC
SARS_CORONAVIRUS AaGT------------AAC---------ATTGGAAAagA-AAggTAAgaACA--------
Severe_acute_respiratory_syndrom AGGTTTTGCTGCATACAgtCGCTACaGgATTGGcAACTATAAATTAAACACAGACCAttC
SARS_coronavirus_civet007 AGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTATAAATTAAAtACAGACCACGC
SARS_coronavirus_GZ50 AGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTATAAATTAAAtACAGACCACGC
SARS_coronavirus_Taiwan_TC1 AGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTATAAATTAAAtACAGACCACGC
Bat_coronavirus_(BtCoV/273/2005) AGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTAcAAATTAAACACAGACCACtC
BtRf-BetaCoV/HeB2013 AGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTAcAAATTAAACACAGACCACtC
SARS_CORONAVIRUS -------------AgTccTGagTTGaatGTAaAactgagGAtctgAaAacTTTtAgCTTG
Severe_acute_respiratory_syndrom CaGTAGCAgtGACAATATTGCTTTGCTtGTACAGTAAGTGACAACAGATGTTTCATCTcG
SARS_coronavirus_civet007 CGGTAGCAACGACAATATTGCTTTGCTAGTACAGTAAGTGACAACAGATGTTTCATCTTG
SARS_coronavirus_GZ50 CGGTAGCAACGACAATATTGCTTTGCTAGTACAGTAAGTGACAACAGATGTTTCATCTTG
SARS_coronavirus_Taiwan_TC1 CGGTAGCAACGACAATATTGCTTTGCTAGTACAGTAAGTGACAACAGATGTTTCATCTTG
Bat_coronavirus_(BtCoV/273/2005) tGGTAGCAACGACAATATTGCTTTGCTAGTACAGTAAGTGACAACAGATGTTTCATCTcG
BtRf-BetaCoV/HeB2013 tGGTAGCAACGACAATATTGCTTTGCTAGTACAGTAAGTGACAACAGATGTTTCATCTcG
SARS_CORONAVIRUS TgGgtTTaCAa---ACAAT----ttGATAcTtATaAcCtcTg-GAacACTTTtAcaA---
Severe_acute_respiratory_syndrom TTGACTTtCAGGTTACtATAGCAGAGATATTacTaATtATTATGAGGACTTTtAaagTTt
SARS_coronavirus_civet007 TTGACTTCCAGGTTACAATAGCAGAGATATTGATTATCATTATGAGGACTTTCAGGATTG
SARS_coronavirus_GZ50 TTGACTTCCAGGTTACAATAGCAGAGATATTGATTATCATTATGAGGACTTTCAGGATTG
SARS_coronavirus_Taiwan_TC1 TTGACTTCCAGGTTACAATAGCAGAGATATTGATTATCATTATGAGGACTTTCAGGATTG
Bat_coronavirus_(BtCoV/273/2005) TTGACTTtCAGGTTACAATAGCAGAGATATTGATTATCATTATGAGGACTTTCAGGATTG
BtRf-BetaCoV/HeB2013 TTGACTTtCAGGTTACAATAGCAGAGATATTGATTATCATTATGAGGACTTTCAGGATTG
SARS_CORONAVIRUS -------------------------gAcTTCAgagtTtAGAaAATgtggctTTTAAtgtT
Severe_acute_respiratory_syndrom CCATTTGGAATCTTGAttacATcATAAacctcATAaTtAaAaAtT----TATcTAAGtCa
SARS_coronavirus_civet007 CtATTTGGAATCTTGACGTTATAATAAGTTCAATAGTGAGACAAT----TATTTAAGCCT
SARS_coronavirus_GZ50 CtATTTGGAATCTTGACGTTATAATAAGTTCAATAGTGAGACAAT----TATTTAAGCCT
SARS_coronavirus_Taiwan_TC1 CtATTTGGAATCTTGACGTTATAATAAGTTCAATAGTGAGACAAT----TATTTAAGCCT
Bat_coronavirus_(BtCoV/273/2005) CCATTTGGAATCTTGAtGTacTAATAAGTTCAATAGTGAGACAAT----TATTTAAGCCT
BtRf-BetaCoV/HeB2013 CCATTTGGAATCTTGAtGTacTAATAAGTTCAATAGTGAGACAAT----TATTTAAGCCT
SARS_CORONAVIRUS gTAAaTAAGggacAcTtTgaTGgacaAcAgGgTGAAGtACCagT----TTctATcATtaA
Severe_acute_respiratory_syndrom CTAACTgAGAAtAAATATTCTcAaTTAGATGAaGAgcAACCaATGGAGaTtGATT-----
SARS_coronavirus_civet007 CTAACTAAGAAGAAtTATTCgGAGTTAGATGATGAAGAACCTATGGAGTTAGATTATCCA
SARS_coronavirus_GZ50 CTAACTAAGAAGAAtTATTCgGAGTTAGATGATGAAGAACCTATGGAGTTAGATTATCCA
SARS_coronavirus_Taiwan_TC1 CTAACTAAGAAGAAtTATTCgGAGTTAGATGATGAAGAACCTATGGAGTTAGATTATCCA
Bat_coronavirus_(BtCoV/273/2005) CTAACTAAGAAGAAATATcCTcAGTTAGATGATGAAGAACCTATGGAGTTAGATTATCCA
BtRf-BetaCoV/HeB2013 CTAACTAAGAAGAAATATcCTcAGTTAGATGATGAAGAACCTATGGAGTTAGATTATCCA
SARS_CORONAVIRUS TAAcACtgtttACAcaAAAgT-----------------TGATgGTgTTgAtgT-------
Severe_acute_respiratory_syndrom --AAACGA---ACATGAAAATTATTCTtTTCtTGgCAcTGATaacAcTcgCtaCTTGtGA
SARS_coronavirus_civet007 TAAAACGA---ACATGAAAATTATTCTCTTCCTGACATTGATTGTATTTACATCTTGCGA
SARS_coronavirus_GZ50 TAAAACGA---ACATGAAAATTATTCTCTTCCTGACATTGATTGTATTTACATCTTGCGA
SARS_coronavirus_Taiwan_TC1 TAAAACGA---ACATGAAAATTATTCTCTTCCTGACATTGATTGTATTTACATCTTGCGA
Bat_coronavirus_(BtCoV/273/2005) TAAAACGA---ACATGAAAATTATTCTCTTCCTGACAcTGATTGcAcTTgCAaCTTGCGA
BtRf-BetaCoV/HeB2013 TAAAAaGA---ACATGAAAATTATTCcCTTCtTGACATTGATTGTAcTTgCAaCTTGCGA
SARS_CORONAVIRUS --------------AGaAtTGTtTgAaAa---------------TAAAAcAACaTTaCCt
Severe_acute_respiratory_syndrom GCTtTATCACTAcCAaGAGTGTGTTAGAGGTACaACaGTACTttTAAAAGAACCTTGCtC
SARS_coronavirus_civet007 GCTATATCACTATCAGGAGTGTGTTAGAGGTACGACTGTACTACTAAAAGAACCTTGCCC
SARS_coronavirus_GZ50 GCTATATCACTATCAGGAGTGTGTTAGAGGTACGACTGTACTACTAAAAGAACCTTGCCC
SARS_coronavirus_Taiwan_TC1 GCTATATCACTATCAGGAGTGTGTTAGAGGTACGACTGTACTACTAAAAGAACCTTGCCC
Bat_coronavirus_(BtCoV/273/2005) GtTATATCACTATCAGGAGTGTGTTAGAGGTACcACTGTACTAtTAgAAGAACCTTGCCC
BtRf-BetaCoV/HeB2013 GtTATATCACTATCAaGAGTGTGTTAGAGGTACcACTGTACTAtTAgAAGAACCTTGCCC
SARS_CORONAVIRUS gT----------------tAATgtAgCATTTgAgCtTtggGCTaA----------GCgCa
Severe_acute_respiratory_syndrom tTCtGGAACATACGAGGGCAATTCACCATTTCAtCCTCTaGCTGAtAACAAATTTGCACT
SARS_coronavirus_civet007 ATCAGGAACATACGAGGGCAATTCACCATTTCACCCTCTTGCTGAtAAtAAATTTGCACT
SARS_coronavirus_GZ50 ATCAGGAACATACGAGGGCAATTCACCATTTCACCCTCTTGCTGACAAtAAATTTGCACT
SARS_coronavirus_Taiwan_TC1 ATCAGGAACATACGAGGGCAATTCACCATTTCACCCTCTTGCTGACAAtAAATTTGCACT
Bat_coronavirus_(BtCoV/273/2005) ATCAGGAACATAtGAGGGCAATTCACCATTTCAtCCcCTTGCTGACAACAAATTTGCACT
BtRf-BetaCoV/HeB2013 gTCAGGAACtTACGAGGGCAATTCACCATTTCAtCCTCTTGCTGAtAACAAATTTGCACT
SARS_CORONAVIRUS AcaTTaaACcAG---------------TaCcaGaGgTGAaaaTACTCaAtA--------A
Severe_acute_respiratory_syndrom gACTTGCttTAGCACtCAaTTTGCTTTTGCTTGTcCTGACGGcgtaaaACAcgtCTATCA
SARS_coronavirus_civet007 AACTTGCACTAGCACACACTTTGCTTTTGCTTGTGCTGACGGTACTCGACAcACCTATCA
SARS_coronavirus_GZ50 AACTTGCACTAGCACACACTTTGCTTTTGCTTGTGCTGACGGTACTCGACATACCTATCA
SARS_coronavirus_Taiwan_TC1 AACTTGCACTAGCACACACTTTGCTTTTGCTTGTGCTGACGGTACTCGACATACCTATCA
Bat_coronavirus_(BtCoV/273/2005) AACTTGCAtTAGCACACAtTTTGCTTTTGCcTGTGCTGACGGTACTaGACATACCTATCA
BtRf-BetaCoV/HeB2013 AACTTGCACTAGCACACAtTTTGCTTTTGCTTGTGCTGACGGTACTaGACATACCTATCA
SARS_CORONAVIRUS ttTGgGTGt--GgaCAtTgctgCtAAtACTgTgaTCtgggActAcAaAAGAGatGcTcCA
Severe_acute_respiratory_syndrom GtTaCGTGCcAGATCAGTTTCACCtAAACTgT--TC----ATCAGACAAGAGGAaGTTCA
SARS_coronavirus_civet007 GCTGCGTGCAAGATCAGTTTCACCAAAACTTT--TC----ATCAGACAAGAGGAGGTTCA
SARS_coronavirus_GZ50 GCTGCGTGCAAGATCAGTTTCACCAAAACTTT--TC----ATCAGACAAGAGGAGGTTCA
SARS_coronavirus_Taiwan_TC1 GCTGCGTGCAAGATCAGTTTCACCAAAACTTT--TC----ATCAGACAAGAGGAGGTTCA
Bat_coronavirus_(BtCoV/273/2005) GCTtCGTGCAAGATCAGTTTCACCtAAACTTT--TC----AcCAGACAAGAGaAaGTTtA
BtRf-BetaCoV/HeB2013 GCTtCGTGCAAGATCAGTTTCACCtAAACTTT--TC----ATCAGACAAGAGaAaGTTtA
SARS_CORONAVIRUS gCAcAtAtaTCTACT--------------ATTGgTG---------------------TTT
Severe_acute_respiratory_syndrom ----AGAaCTtTACTCtCCAaTTTTTCTtATTGTTGCgGCaaTAGTgTTTATAAcACTTT
SARS_coronavirus_civet007 ACA-AGAGCTCTACTCGCCACTTTTTCTCATTGTTGCTGCTCTAGTATTTtTAATACTTT
SARS_coronavirus_GZ50 ACA-AGAGCTCTACTCGCCACTTTTTCTCATTGTTGCTGCTCTAGTATTTtTAATACTTT
SARS_coronavirus_Taiwan_TC1 ACA-AGAGCTCTACTCGCCACTTTTTCTCATTGTTGCTGCTCTAGTATTTtTAATACTTT
Bat_coronavirus_(BtCoV/273/2005) cCA-AGAGCTCTAtTCGCCgCTTTTTCTCATTGTTGCgGCTtTAGTATTTATAATACTTT
BtRf-BetaCoV/HeB2013 cCA-AGAGCTCTAtTCGCCgCTTTTTCTCATTGTTGCTGCTtTAGTATTTATAATACTTT
SARS_CORONAVIRUS GtTctAtgAcT--------GACAtAgccAAgaAaCcaACTgaAA-------CgATTTGTG
Severe_acute_respiratory_syndrom GCTTCACacTcAAaAGAAAGACAGAATGAtTGAaCTttCaTTAATTGACTTCTATTTGTG
SARS_coronavirus_civet007 GCTTCACCATTAAGAGAAAGACAGAATGAATGAGCTCACTTTAATTGACTTCTATTTGTG
SARS_coronavirus_GZ50 GCTTCACCATTAAGAGAAAGACAGAATGAATGAGCTCACTTTAATTGACTTCTATTTGTG
SARS_coronavirus_Taiwan_TC1 GCTTCACCATTAAGAGAAAGACAGAATGAATGAGCTCACTTTAATTGACTTCTATTTGTG
Bat_coronavirus_(BtCoV/273/2005) GCTTCACCATTAAGAGAAAGACAGAATGAgTGAGCTCACTTTAATTGACTTCTATTTGTG
BtRf-BetaCoV/HeB2013 GCTTCACCATTAAGAGgAAGACAGAATGAATGAGCTCACTTTAATTGACTTCTATTTGTG
SARS_CORONAVIRUS C--------------aCcAcTCacTGTcTT----------------TTTTGaTggT----
Severe_acute_respiratory_syndrom CTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATtATGCTTATTATcTTTTGGTTcTCACT
SARS_coronavirus_civet007 CTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATAATGCTTATTATATTTTGGTTTTCACT
SARS_coronavirus_GZ50 CTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATAATGCTTATTATATTTTGGTTTTCACT
SARS_coronavirus_Taiwan_TC1 CTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATAATGCTTATTATATTTTGGTTTTCACT
Bat_coronavirus_(BtCoV/273/2005) CTTTTTAGCCTTTCTGCTATTCCTTGTTcTAATAATGCTTATcATATTTTGGTTTTCACT
BtRf-BetaCoV/HeB2013 CTTTTTAGCCTTTCTGCTATTCCTTGTTcTAATAATGCTTATTATATTTTGGTTTTCACT
SARS_CORONAVIRUS -agAgTtgAtGgTCaAG--------------------TAgACttAttTagAAaTgCcCgT
Severe_acute_respiratory_syndrom tGAAcTgCAaGATCataAtGAAaCTTGTcAC---GcCTAAACGAACATGAAAtTTCTtgT
SARS_coronavirus_civet007 CGAAATCCAGGATCTAGAAGAACCTTGTAcCAAAGTCTAAACGAACATGAAACTTCTCAT
SARS_coronavirus_GZ50 CGAAATCCAGGATCTAGAAGAACCTTGTAcCAAAGTCTAAACGAACATGAAACTTCTCAT
SARS_coronavirus_Taiwan_TC1 CGAAATCCAGGATCTAGAAGAACCTTGTAcCAAAGTCTAAACGAACATGAAACTTCTCAT
Bat_coronavirus_(BtCoV/273/2005) tGAAcTCCAGGATaTAGAAGAACCTTGTAACAAAGTtTAAACaAACATGAAAtTTCTCAT
BtRf-BetaCoV/HeB2013 tGAAcTCCAGGATaTAGAAGAACCTTGTAACAAAGTCTAAACGAACATGAAACTTCTCAT
SARS_CORONAVIRUS aaTggTG--------TTCTtatTaCAG--------------------AaggtAGtGtTaa
Severe_acute_respiratory_syndrom TtTcTTaggaatcATcaCaac-TGtAGCTGCATttcaccaagAaTGTAGTttAcaGtcaT
SARS_coronavirus_civet007 TGTTTTGACTTGTATTTCTCTATGCAGtTGCATAC-----GCACTGTAGTACAGCGCTGT
SARS_coronavirus_GZ50 TGTTTTGACTTGTATTTCTCTATGCAGtTGCATAC-----GCACTGTAGTACAGCGCTGT
SARS_coronavirus_Taiwan_TC1 TGTTTTGACTTGTATTTCTCTATGCAGtTGCATAt-----GCACTGTAGTACAGCGCTGT
Bat_coronavirus_(BtCoV/273/2005) TGTTaTGACTTGTATaTCTCTtTGCtGCTGtATAC-----GCACTGTgGTACAGCGCTGT
BtRf-BetaCoV/HeB2013 TGTTaTGACTTGTATcTCTCTtTGCtGCTGtATAC-----GCACTGTgGTACAGCGCTGT
SARS_CORONAVIRUS aggTtTAc----AACCaTcTGT--------------------------------------
Severe_acute_respiratory_syndrom GtActcAAcAtcAACCaTATGTagTTGAtGACCCgTGTCCtAtTcacTtCtAttCtaAA-
SARS_coronavirus_civet007 GCATCTAATA--AACCTcATGTGCTTGAAGAtCCTTGTCCtACTGGTTACCAaCCtGAAT
SARS_coronavirus_GZ50 GCATCTAATA--AACCTcATGTGCTTGAAGAtCCTTG-----------------------
SARS_coronavirus_Taiwan_TC1 GCATCTAATA--AACCTcATGTGCTTGAAGAtCCTTG-----------------------
Bat_coronavirus_(BtCoV/273/2005) GCATCTAATA--cACCTTATGTtCTTGAAaACCCaTGTCCCACTGGTTAtCAGCCAGAgT
BtRf-BetaCoV/HeB2013 GtATCTAATA--cACCTTATGTtCTTGAAaACCCaTGTCCCACTGGTTAtCAGCCAGAgT
SARS_CORONAVIRUS --------AGGTcCcAaACaAG--cTAgTctTaATgGagtcaCa--Ttaa---------T
Severe_acute_respiratory_syndrom ------TggtaTAttAgAgTAGGaGctAgAaaatcAGCACcttTaaTtGaaTTGTGCg-T
SARS_coronavirus_civet007 GGAAtATAAGGTACAAaACTAGGGGTAATACTTATAGCACTGCT--TGGCTTTGTGCTCT
SARS_coronavirus_GZ50 ------TAAGGTACAACACTAGGGGTAATACTTATAGCACTGCT--TGGCTTTGTGCTCT
SARS_coronavirus_Taiwan_TC1 ------TAAGGTACAACACTAGGGGTAATACTTATAGCACTGCT--TGGCTTTGTGCTCT
Bat_coronavirus_(BtCoV/273/2005) GGAACATtAGGTAtAACACTAGGGGTAATACTTATAaCAgTGCT--aGaCTgTGTGCTtT
BtRf-BetaCoV/HeB2013 GGAACATtAGGTAtAACACTAGGGGTAATACTTATAaCACTGCT--aGaCTgTGTGCctT
SARS_CORONAVIRUS tGGAgAaGcc---------gTA-------------------------AaAacAcaGTTCA
Severe_acute_respiratory_syndrom gGatgAGGcTggttctaaaTcACCcaTTcagtaCATcGATatCggtaAttaTAcaGTTt-
SARS_coronavirus_civet007 AGGAAAGGTT---------TTACCTTTT-----CATAGATGGC----ACACTATGGTTCA
SARS_coronavirus_GZ50 AGGAAAGGTT---------TTACCTTTT-----CATAGATGGC----ACACTATGGTTCA
SARS_coronavirus_Taiwan_TC1 AGGAAAGGTT---------TTACCTTTT-----CATAGATGGC----ACACTATGGTTCA
Bat_coronavirus_(BtCoV/273/2005) AGGAAAaGTT---------TTAtCTTTT-----CATAGgTGGC----ACACTATGGTTCA
BtRf-BetaCoV/HeB2013 AGGAAAaGTT---------cTAtCTTTT-----CATAGATGGC----ACACTATGGTTCA
SARS_CORONAVIRUS A----------------TTAtTATCtgC--------------AGTAGGTcGTtCtgcTGT
Severe_acute_respiratory_syndrom --CcTGtttACCTt---TTACaATtAAtTGcCAgGAaCCtaaAtTgGGTaGT---CTTGT
SARS_coronavirus_civet007 AACATGCACACCTAATGTTACTATCAACTGTCAAGATCC---AGctGGTGGTGCGCTTaT
SARS_coronavirus_GZ50 AACATGCACACCTAATGTTACTATCAACTGTCAAGATCC---AGctGGTGGTGCGCTTaT
SARS_coronavirus_Taiwan_TC1 AACATGCACACCTAATGTTACTATCAACTGTCAAGATCC---AGctGGTGGTGCGCTTaT
Bat_coronavirus_(BtCoV/273/2005) AgCATGtACACCTAATGTcACcATCAAtTGTCAAGATCC---AGTAGGTGGTGCaCTTGT
BtRf-BetaCoV/HeB2013 AgCATGtACACCTAATGTcACcATCAAtTGTCAAGATCC---AGTAGGTGGTGCaCTTGT
SARS_CORONAVIRUS -tCcAGGTGcTGtgcgatctCCTTcaCATGcAGGTTggtgAcCCGCTGCtccTgtAtcAg
Severe_acute_respiratory_syndrom AGtgcGtTGTTc-----GTtC-----tATGAAGacT-------------tTTTAGAgtAt
SARS_coronavirus_civet007 AGCtAGGTGTTG-----GTACCTT--CATGAAGGTcACCAAACtGCTGCATTTAGA----
SARS_coronavirus_GZ50 AGCtAGGTGTTG-----GTACCTT--CATGAAGGTcACCAAACtGCTGCATTTAGA----
SARS_coronavirus_Taiwan_TC1 AGCtAGGTGTTG-----GTACCTT--CATGAAGGTcACCAAACtGCTGCATTTAGA----
Bat_coronavirus_(BtCoV/273/2005) AGCgAGaTGTTG-----GTACtTT--tAccAAGGTTcCCAgACCGCTaCATTTAGA----
BtRf-BetaCoV/HeB2013 AGCgAGaTGTTG-----GTACtTT--tAccgAGGTTcCCAgACCGCTaCATTTAGA----
SARS_CORONAVIRUS CtTGgCGgAgTTG-------------------------------AgAgcAAtgcGgCTct
Severe_acute_respiratory_syndrom CaTGACGTtCgTGT-----TGTTTTAgAtttcatcTAAACGAACAAAcTAAAATGTCTGA
SARS_coronavirus_civet007 ---GACGTACTTGT-----TGTTTTAAA-------TAAACGAACAAATTAAAATGTCTGA
SARS_coronavirus_GZ50 ---GACGTACTTGT-----TGTTTTAAA-------TAAACGAACAAATTAAAATGTCTGA
SARS_coronavirus_Taiwan_TC1 ---GACGTACTTGT-----TGTTTTAAA-------TAAACGAACAAATTAAAATGTCTGA
Bat_coronavirus_(BtCoV/273/2005) ---GACaTACaTGTAGATCTGTTcTt---------TAAACGAAC---TTAAAATGTCTGA
BtRf-BetaCoV/HeB2013 ---GACaTACacGTAGATCTGTTcTt---------TAAACGAAC---TTAAAATGTCTGA
SARS_CORONAVIRUS TgAgcGcttgCggcttgACCgACGTg------tCtGCA-------TGcTGGgCCaTCAtg
Severe_acute_respiratory_syndrom TAATGGACCCCA---AAAtCAgCGaAaTGCaCCCCGCATTACgTTTGGTGGACCCTCAGA
SARS_coronavirus_civet007 TAATGGACCCCAATCAAACCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCtaCAGA
SARS_coronavirus_GZ50 TAATGGACCCCAATCAAACCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCCaCAGA
SARS_coronavirus_Taiwan_TC1 TAATGGACCCCAATCAAACCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCCaCAGA
Bat_coronavirus_(BtCoV/273/2005) TAATGGACCCCA---AAACCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCCTCAGA
BtRf-BetaCoV/HeB2013 TAATGGACCCCA---AAACCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCCTCAGA
SARS_CORONAVIRUS TcCA------------CAGgggtctcTGGtGGcaGagGTGGGG-------------GCGC
Severe_acute_respiratory_syndrom TTCAACTGgCAgTAACCAGAA-----TGGAGaACGCAGTGGGGCgcGatCAAAACAaCGt
SARS_coronavirus_civet007 TTCAACTGACAAcAACCAGAA-----TGGAGGACGCAaTGGGGCAAGGCCAAAACAGCGC
SARS_coronavirus_GZ50 TTCAACTGACAATAACCAGAA-----TGGAGGACGCAaTGGGGCAAGGCCAAAACAGCGC
SARS_coronavirus_Taiwan_TC1 TTCAACTGACAATAACCAGAA-----TGGAGGACGCAaTGGGGCAAGGCCAAAACAGCGC
Bat_coronavirus_(BtCoV/273/2005) TTCAACTGACAATAACCAGgA-----TGGAGGACGCAGTGGtGCAcGGCCAAAACAaCGC
BtRf-BetaCoV/HeB2013 TTCAACTGACAATAACCAGgA-----TGGAGGACGCAGTGGtGtAcGGCCAAAACAaCGC
SARS_CORONAVIRUS C----------TcagCCgtgcAgTACTcCacCac--------GCcCTCctcCAGCgTG--
Severe_acute_respiratory_syndrom CGgCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACcGCTCTCACTCAaCATGGC
SARS_coronavirus_civet007 CGACCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGC
SARS_coronavirus_GZ50 CGACCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGC
SARS_coronavirus_Taiwan_TC1 CGACCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGC
Bat_coronavirus_(BtCoV/273/2005) CGACCCCAgGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGt
BtRf-BetaCoV/HeB2013 CGACCCCAgGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGt
SARS_CORONAVIRUS --tGAtGttCTTAAccTCCtT----------GaGactCcgTCtgCctCgA----------
Severe_acute_respiratory_syndrom AAGGAAGAcCTTAAATTCCCTCGAGGaCAaGGCGTTCCAATtAACACCAATAGcaGTCCA
SARS_coronavirus_civet007 AAGGAgGAACTTAgATTCCCTCGAGGCCAGGGCGTTCCAATCAACACCAATAGTGGTCCA
SARS_coronavirus_GZ50 AAGGAgGAACTTAgATTCCCTCGAGGCCAGGGCGTTCCAATCAACACCAATAGTGGTCCA
SARS_coronavirus_Taiwan_TC1 AAGGAgGAACTTAgATTCCCTCGAGGCCAGGGCGTTCCAATCAACACCAATAGTGGTCCA
Bat_coronavirus_(BtCoV/273/2005) AAGGAAGgACTcAAATTCCCTCaAGGCCAGGGaGTTCCtATCAACACCAATAGTGGcagA
BtRf-BetaCoV/HeB2013 AAGGAAGgACTcAAATTCCCTCaAGGCCAGGGaGTTCCtATCAACACCAATAGTGGcagA
SARS_CORONAVIRUS ---GAaCAgATctttTttTtCC------CagttCattGAGTTtGgaGTttTG--GaTAcc
Severe_acute_respiratory_syndrom GATGACCAAATTGGCTACTACCGAAGAGCTACCaGACGAaTTCGTGGTGGTGACGGTAAA
SARS_coronavirus_civet007 GATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGcAAA
SARS_coronavirus_GZ50 GATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGcAAA
SARS_coronavirus_Taiwan_TC1 GATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGcAAA
Bat_coronavirus_(BtCoV/273/2005) GATGACCAAATTGGCTACTACaGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGTAAA
BtRf-BetaCoV/HeB2013 GAcGACCAAATTGGCTACTACaGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGTAAA
SARS_CORONAVIRUS ATGcAgaAagTt------------TACcTtTAagACtgAGcAcCattttgAtAAcCTT--
Severe_acute_respiratory_syndrom ATGAAAGAtCTCAGtCCaAGATGGTAtTTCTAcTACCTAGGAACTGGgCCAGAAGCTggA
SARS_coronavirus_civet007 ATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCA
SARS_coronavirus_GZ50 ATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCA
SARS_coronavirus_Taiwan_TC1 ATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCA
Bat_coronavirus_(BtCoV/273/2005) ATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCA
BtRf-BetaCoV/HeB2013 ATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCA
SARS_CORONAVIRUS CcTCCCcAaaaCGtTcAtg----------CtcAcGaGTT-----TGtGGGAaaagTGAAa
Severe_acute_respiratory_syndrom CTTCCCTAtGGtGCTAACAAAGAcGGCATCaTATGGGTTGCAACTGAGGGAGCCTTGAAT
SARS_coronavirus_civet007 CTTCCCTACGGCGCTAACAAAGAAGGCATCGTATGGGTTGCAACTGAGGGAGCCTTGAAT
SARS_coronavirus_GZ50 CTTCCCTACGGCGCTAACAAAGAAGGCATCGTATGGGTTGCAACTGAGGGAGCCTTGAAT
SARS_coronavirus_Taiwan_TC1 CTTCCCTACGGCGCTAACAAAGAAGGCATCGTATGGGTTGCAACTGAGGGAGCCTTGAAT
Bat_coronavirus_(BtCoV/273/2005) CTTCCCTAtGGtGCcAAtAAAGAAGGCATCGTATGGGTTGCAACTGAGGGtGCCTTGAAT
BtRf-BetaCoV/HeB2013 CTTCCCTAtGGtGCcAAtAAAGAAGGCATCGTATGGGTTGCAACTGAGGGtGCCTTGAAc
SARS_CORONAVIRUS gCcagtACCCAcAGAaaACtaTGG-----------CTgAacACAg-GCTcaCATC-----
Severe_acute_respiratory_syndrom AC----ACCaAAAGAtCACATTGGCACCCGCAATCCTgcTAACAATGCTGCaATCGTGCT
SARS_coronavirus_civet007 AC----ACCCAAAGACCACATTGGCACCCGCAATCCTAATAACAATGCTGCCAcCGTGCT
SARS_coronavirus_GZ50 AC----ACCCAAAGACCACATTGGCACCCGCAATCCTAATAACAATGCTGCCAcCGTGCT
SARS_coronavirus_Taiwan_TC1 AC----ACCCAAAGACCACATTGGCACCCGCAATCCTAATAACAATGCTGCCAcCGTGCT
Bat_coronavirus_(BtCoV/273/2005) AC----ACCaAAAGAtCAtATTGGCACCCGCAATCCTAATAACAATGCTGCtATtGTGCT
BtRf-BetaCoV/HeB2013 AC----ACCaAAAGAtCAtATTGGCACCCGCAATCCTAATAACAATGCTGCtATtGTGCT
SARS_CORONAVIRUS ACgACT--------------------------GCTTCT---------------GtGGCtG
Severe_acute_respiratory_syndrom ACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGgAGCAGAGGCGG
SARS_coronavirus_civet007 ACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAgGGAAGCAGAGGCGG
SARS_coronavirus_GZ50 ACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAgGGAAGCAGAGGCGG
SARS_coronavirus_Taiwan_TC1 ACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAgGGAAGCAGAGGCGG
Bat_coronavirus_(BtCoV/273/2005) ACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGgAGCAGgaatGG
BtRf-BetaCoV/HeB2013 ACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGgAGCAGgaatGG
SARS_CORONAVIRUS ttGaCcAGC-------CatcCaTCtTtgCG-----GtaGTAgcaCAAGAcAgTTtAA---
Severe_acute_respiratory_syndrom CAGTCAAGCCTCTTCTCGtTCCTCATCACGTAGTCGCaacAgTTCAAGA-AATTCAACTC
SARS_coronavirus_civet007 CAGTCAAGCCTCTTCTCGCTCCTCATCACGTAGTCGCGGTAATTCAAGA-AATTCAACTC
SARS_coronavirus_GZ50 CAGTCAAGCCTCTTCTCGCTCCTCATCACGTAGTCGCGGTAATTCAAGA-AATTCAACTC
SARS_coronavirus_Taiwan_TC1 CAGTCAAGCCTCTTCTCGCTCCTCATCACGTAGTCGCGGTAATTCAAGA-AATTCAACTC
Bat_coronavirus_(BtCoV/273/2005) tAGTCAAGCCTCTTCTCGCTCCTCATCACGTAGTCGtGGaAATTCAAGA-AcTTCAACTC
BtRf-BetaCoV/HeB2013 tAGTCAAGCCTCTTCTCGCTCCTCATCACGTAGTCGtGGaAATTCAAGA-AcTTCAACTC
SARS_CORONAVIRUS -TGaCAGCAGT----GAgAcTtgCtgcCTtGAAT--tTA--------GGTGAAACatttg
Severe_acute_respiratory_syndrom CaGGCAGCAGTAGGGGAAcTTCTCCTGCTaGAATGGCTgGCaatGGcGGTGAtgCTGCtC
SARS_coronavirus_civet007 CTGGCAGCAGTAGGGGAAATTCTCCTGCTCGAATGGCTAGCGGAGGTGGTGAAACTGCCC
SARS_coronavirus_GZ50 CTGGCAGCAGTAGGGGAAATTCTCCTGCTCGAATGGCTAGCGGAGGTGGTGAAACTGCCC
SARS_coronavirus_Taiwan_TC1 CTGGCAGCAGTAGGGGAAATTCTCCTGCTCGAATGGCTAGCGGAGGTGGTGAAACTGCCC
Bat_coronavirus_(BtCoV/273/2005) CTGGCAGCAGTAGGGGAAATTCTCCTGCTCGAgTGGCTAGCGGAGGTGGTGAAACTGCCC
BtRf-BetaCoV/HeB2013 CTGGCAGCAGTAGGGGAAATTCTCCTGCTCGAgTGGCTAGCGGAGGTGGTGAAACTGCCC
SARS_CORONAVIRUS TCaCGCacT------cAaAggGATTGtACag----------AAAGTgT---GTtAAatCC
Severe_acute_respiratory_syndrom TtGCttTgcTGCTGCTtGACAGATTGAACCAGCTTGAGAGCAAAaTgTCTGGTAAAGGCC
SARS_coronavirus_civet007 TCGCGCTATTGCTGCTAGACAGATTGAACCAGCTTGAGAGCAAAGTTTCTGGTAAAGGCC
SARS_coronavirus_GZ50 TCGCGCTATTGCTGCTAGACAGATTGAACCAGCTTGAGAGCAAAGTTTCTGGTAAAGGCC
SARS_coronavirus_Taiwan_TC1 TCGCGCTATTGCTGCTAGACAGATTGAACCAGCTTGAGAGCAAAGTTTCTGGTAAAGGCC
Bat_coronavirus_(BtCoV/273/2005) TCGCGCTATTGCTGtTAGACAGATTGAACCAGCTgGAGAGCAAAGTTTCTGGTAAAGGCC
BtRf-BetaCoV/HeB2013 TCGCGCTATTGCTGtTAGACAGATTGAACCAGCTgGAGAGCAAAGTTTCTGGTAAAGGCC
SARS_CORONAVIRUS A--------gAGaagAAACTGgC-------------CTaCTcAtGCcTCTAAAAgcC---
Severe_acute_respiratory_syndrom AACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCtTCTAAgAAGCCTC
SARS_coronavirus_civet007 AACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCATCTAAAAAGCCTC
SARS_coronavirus_GZ50 AACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCATCTAAAAAGCCTC
SARS_coronavirus_Taiwan_TC1 AACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCATCTAAAAAGCCTC
Bat_coronavirus_(BtCoV/273/2005) AACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTtCaGAGGCATCTAAAAAGCCTC
BtRf-BetaCoV/HeB2013 AACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTtCaGAGGCATCTAAAAAGCCTC
SARS_CORONAVIRUS ------------------------------------------------------------
Severe_acute_respiratory_syndrom GgCAAAAACGTACTGCCACtAAAgcaTACAAtGTaACaCAAGCtTTcGGcAGACGTGGTC
SARS_coronavirus_civet007 GCCAAAAACGTACTGCCACAAAACAGTACAACGTCACTCAAGCATTTGGGAGACGTGGTC
SARS_coronavirus_GZ50 GCCAAAAACGTACTGCCACAAAACAGTACAACGTCACTCAAGCATTTGGGAGACGTGGTC
SARS_coronavirus_Taiwan_TC1 GCCAAAAACGTACTGCCACAAAACAGTACAACGTCACTCAAGCATTTGGGAGACGTGGTC
Bat_coronavirus_(BtCoV/273/2005) GaCAAAAACGTACTGCaACcAAACAGTACAAtGTCACcCAAGCtTTTGGGcGACGTGGTC
BtRf-BetaCoV/HeB2013 GaCAAAAACGTACTGCaACcAAACAGTAtAAtGTCACcCAAGCtTTTGGGcGACGTGGTC
SARS_CORONAVIRUS ---------CCaAAaGAAATT------------AtCTtcTtAGAgggaG----------A
Severe_acute_respiratory_syndrom CAGAACAAACCCAAGGAAATTTtGGGGACCAgGAaCTAATCAGACAAGGAACTGATTACA
SARS_coronavirus_civet007 CAGAACAAACCCAAGGAAATTTCGGGGACCAAGACCTAATCAGACAAGGAACTGATTACA
SARS_coronavirus_GZ50 CAGAACAAACCCAAGGAAATTTCGGGGACCAAGACCTAATCAGACAAGGAACTGATTACA
SARS_coronavirus_Taiwan_TC1 CAGAACAAACCCAAGGAAATTTCGGGGACCAAGACCTAATCAGACAAGGAACTGATTACA
Bat_coronavirus_(BtCoV/273/2005) CAGAtCAAACtCAAGGAAAcTTtGGaGACCAgGAgtTAATCAGACAAGGAACTGATTAtA
BtRf-BetaCoV/HeB2013 CAGAtCAAACtCAAGGAAAcTTtGGaGACCAgGAgtTAATCAGACAAGGAACTGATTAtA
SARS_CORONAVIRUS AACACTtcCCaCAgA-----------------AGTG------------------------
Severe_acute_respiratory_syndrom AACAtTGGCCGCAAATTGCACAATTTGCcCCcAGcGCtTCaGCgTTCTTCGGAATGTCgC
SARS_coronavirus_civet007 AACAgTGGCCGCAAATTGCACAATTTGCTCCAAGTGCCTCTGCATTCTTtGGAATGTCAC
SARS_coronavirus_GZ50 AACAtTGGCCGCAAATTGCACAATTTGCTCCAAGTGCCTCTGCATTCTTtGGAATGTCAC
SARS_coronavirus_Taiwan_TC1 AACAtTGGCCGCAAATTGCACAATTTGCTCCAAGTGCCTCTGCATTCTTtGGAATGTCAC
Bat_coronavirus_(BtCoV/273/2005) AACACTGGCCGCAAATaGCACAgTTTGCTCCAAGTGCCTCTGCATTCTTCGGAATGTCAC
BtRf-BetaCoV/HeB2013 AACACTGGCCGCAAATaGCACAgTTTGCTCCAAGTGCCTCTGCATTCTTCGGAATGTCAC
SARS_CORONAVIRUS ---TTaaCAgaGGAAGTtg-----TCttGAAaActGgTGAtTTAc-----AaCCATTA--
Severe_acute_respiratory_syndrom GCATTGGCAT-GGAAGTCACACCTTCGGGAACgTGGtTGACcTAcacaGGtGCCATcAAA
SARS_coronavirus_civet007 GCATTGGCAT-GGAAGTCACACCTTCGGGAACATGGCTGACTTATCATGGAGCCATTAAA
SARS_coronavirus_GZ50 GCATTGGCAT-GGAAGTCACACCTTCGGGAACATGGCTGACTTATCATGGAGCCATTAAA
SARS_coronavirus_Taiwan_TC1 GCATTGGCAT-GGAAGTCACACCTTCGGGAACATGGCTGACTTATCATGGAGCCATTAAA
Bat_coronavirus_(BtCoV/273/2005) GCATTaGCAT-GGAAGTCACACCTTCGGGAACATGGCTGACTTATCATGGAGCCATTAAA
BtRf-BetaCoV/HeB2013 GCATTGGCAT-GGAAGTCACACCTTCGGGAACATGGCTGACTTAcCATGGAGCCATTAAA
SARS_CORONAVIRUS --------------------------------------------GAACAA----------
Severe_acute_respiratory_syndrom TTGGATGACAAAGATCCAaAtTTCAAAGAtcAaGTCATttTGCTGAAtAAGCAtATTGAC
SARS_coronavirus_civet007 TTGGATGACAAAGATCCACAATTCAAAGACAACGTCATACTGCTGAACAAGCACATTGAC
SARS_coronavirus_GZ50 TTGGATGACAAAGATCCACAATTCAAAGACAACGTCATACTGCTGAACAAGCACATTGAC
SARS_coronavirus_Taiwan_TC1 TTGGATGACAAAGATCCACAATTCAAAGACAACGTCATACTGCTGAACAAGCACATTGAC
Bat_coronavirus_(BtCoV/273/2005) TTGGATGACAAAGATCCcCAATTCAAAGACAACGTCATACTGCTGAACAAGCACATTGAC
BtRf-BetaCoV/HeB2013 TTGGATGACAAAGATCCcCAATTCAAAGACAACGTCATACTGtTGAAtAAGCACATTGAC
SARS_CORONAVIRUS --------------CCtACtAgtgaAG-------------------------CTGtTGAA
Severe_acute_respiratory_syndrom GCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAgAAGgCTGATGAA
SARS_coronavirus_civet007 GCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAA
SARS_coronavirus_GZ50 GCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAA
SARS_coronavirus_Taiwan_TC1 GCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAA
Bat_coronavirus_(BtCoV/273/2005) GCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAA
BtRf-BetaCoV/HeB2013 GCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAA
SARS_CORONAVIRUS GCTC--CaTTgGttG-----------------GtaCACcG-----CTTCaaCCaattatT
Severe_acute_respiratory_syndrom aCTCAagCcTTaCCGCAGAGACAgAAGAAACAGCaaACTGTGACTCTTCTTCCTGCtGCa
SARS_coronavirus_civet007 GCTCAGCCTTTGCtGCAGAGACAAAAGAAgCAGCCCACTGTGACTCTTCTTCCTGCGGCT
SARS_coronavirus_GZ50 GCTCAGCCTTTGCCGCAGAGACAAAAGAAgCAGCCCACTGTGACTCTTCTTCCTGCGGCT
SARS_coronavirus_Taiwan_TC1 GCTCAGCCTTTGCCGCAGAGACAAAAGAAgCAGCCCACTGTGACTCTTCTTCCTGCGGCT
Bat_coronavirus_(BtCoV/273/2005) GCTCAGCCTTTaCCGCAGAGACAAAAGAAACAGCCCACTGTGACTCTTCTTCCTGCGGCc
BtRf-BetaCoV/HeB2013 GCTCAGCCTTTaCCGCAGAGACAAAAGAAACAGCCCACTGTGACTCTTCTTCCTGCGGCc
SARS_CORONAVIRUS aACA------ATTTtaCCA--------------cCCtTaAGTGctatcTtTGtTGtTaCA
Severe_acute_respiratory_syndrom GAttTGGATGATTTCTCCAaACAAtTgCAAcAaTCCATGAGcaG------TGCTGAcTCA
SARS_coronavirus_civet007 GACATGGATGATTTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCA
SARS_coronavirus_GZ50 GACATGGATGATTTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCA
SARS_coronavirus_Taiwan_TC1 GACATGGATGATTTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCA
Bat_coronavirus_(BtCoV/273/2005) GACATGGATGATTTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCA
BtRf-BetaCoV/HeB2013 GACATGGATGATTTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCA
SARS_CORONAVIRUS A------CATtAACA--------------ACttGtCtagTaG-------------TTgCa
Severe_acute_respiratory_syndrom ACTCAGGCcTAAAC--TCATGcaGACCACACAAGGCAGATGGGCTATaTAAACGTTTTCG
SARS_coronavirus_civet007 ACTCAGGCATAAACACTCATGATGACCACACAAGGCAGATGGGCTATGTAAACGTTTTCG
SARS_coronavirus_GZ50 ACTCAGGCATAAACACTCATGATGACCACACAAGGCAGATGGGCTATGTAAACGTTTTCG
SARS_coronavirus_Taiwan_TC1 ACTCAGGCATAAACACTCATGATGACCACACAAGGCAGATGGGCTATGTAAACGTTTTCG
Bat_coronavirus_(BtCoV/273/2005) ACTCAGGCATAAACACTCATGATGACCACACAAGGCAGATGGGCTATGTAAACGTTTTCG
BtRf-BetaCoV/HeB2013 ACTCAGGCATAAACACTCATGATGACCACACAAGGCAGATGGGCTATGTAAACGTTTTCG
SARS_CORONAVIRUS CAtgTCaacTTAaaAggtAagtTaTtCTtTTtaGCAGcActAcgtatttgTTtTCGTAgt
Severe_acute_respiratory_syndrom CttTTCCGTTTACGATAtATAGTCTACTCTTGTGCAGAATGA-------ATTCTCGTAAC
SARS_coronavirus_civet007 CAATTCCGTTTACGATACATAGTCTACTCTTGTGCAGAATGA-------ATTCTCGTAAC
SARS_coronavirus_GZ50 CAATTCCGTTTACGATACATAGTCTACTCTTGTGCAGAATGA-------ATTCTCGTAAC
SARS_coronavirus_Taiwan_TC1 CAATTCCGTTTACGATACATAGTCTACTCTTGTGCAGAATGA-------ATTCTCGTAAC
Bat_coronavirus_(BtCoV/273/2005) CAATTCCGTTTACGATACATAGTCTACTCTTGTGCAGAATGA-------ATTCTCGTAAC
BtRf-BetaCoV/HeB2013 CAATTCCGTTTACGATACATAGTCTACTCTTGTGCAGAATGA-------ATTCTCGTAAC
SARS_CORONAVIRUS TgttCAG-ACAAtgAcaTgaAaT---CTTTAAcgTtcCATAtCAA------AgCAATGtT
Severe_acute_respiratory_syndrom TAcAtAGCACAAGTAGaTgTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAgTG-T
SARS_coronavirus_civet007 TAAACAGCACAAGTAGGTTTAGTTAACTTTAATCTCACATAGCAATCT------------
SARS_coronavirus_GZ50 TAAACAGCACAAGTAGGTTTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAATG-T
SARS_coronavirus_Taiwan_TC1 TAAACAGCACAAGTAGGTTTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAATG-T
Bat_coronavirus_(BtCoV/273/2005) TAAACAGCACAAGTAGGTTTAGTTAACTTTAATtTCACATAGCAATCTTTAATCAATG-T
BtRf-BetaCoV/HeB2013 TAAACAGCACAAGTAGGTTTAGTTAACTTTAATtTCACATAGCAATCTTTAATaAATG-T
SARS_CORONAVIRUS GTgACtTT------------------ttgCtACcTgcgCAttaAtatgACG---------
Severe_acute_respiratory_syndrom GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACG
SARS_coronavirus_civet007 ------------------------------------------------------------
SARS_coronavirus_GZ50 GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCAtCGAGGCCACGCGGAGTACG
SARS_coronavirus_Taiwan_TC1 GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCAtCGAGGCCACGCGGAGTACG
Bat_coronavirus_(BtCoV/273/2005) GTAAtgTTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACG
BtRf-BetaCoV/HeB2013 GTAAtgTTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACG
SARS_CORONAVIRUS ------------------------------------------------------------
Severe_acute_respiratory_syndrom ATCGAGtGTACAGTGAAcAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGT
SARS_coronavirus_civet007 ------------------------------------------------------------
SARS_coronavirus_GZ50 ATCGAGGGTACAGTGAATAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGT
SARS_coronavirus_Taiwan_TC1 ATCGAGGGTACAGTGAATAATGCTAGGGAGAGCT--------------------------
Bat_coronavirus_(BtCoV/273/2005) ATCGAGGGTACAGTGAATAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGT
BtRf-BetaCoV/HeB2013 ATCGAGGGTACAGTGAATAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGT
SARS_CORONAVIRUS ------------------------------------------------------------
Severe_acute_respiratory_syndrom AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACA
SARS_coronavirus_civet007 ------------------------------------------------------------
SARS_coronavirus_GZ50 AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATcACA
SARS_coronavirus_Taiwan_TC1 ------------------------------------------------------------
Bat_coronavirus_(BtCoV/273/2005) AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACA
BtRf-BetaCoV/HeB2013 AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACA
SARS_CORONAVIRUS --------------------------------
Severe_acute_respiratory_syndrom AAAAAAAAAAAaaaaaaaaaaaaaaaaaaaaa
SARS_coronavirus_civet007 --------------------------------
SARS_coronavirus_GZ50 AAAAAAA-------------------------
SARS_coronavirus_Taiwan_TC1 --------------------------------
Bat_coronavirus_(BtCoV/273/2005) AAAAAAAAAAA---------------------
BtRf-BetaCoV/HeB2013 AAAAAA--------------------------